Near full-length genome characterization of an HIV type 1 CRF25_cpx strain from Cameroon.

Abstract:

:Recombinant forms of HIV-1 contribute significantly to the ongoing epidemic. In the present study, we characterized the near full-length genome of one candidate HIV-1 CRF25_cpx strain originating in Cameroon, 06CM-BA-040. Viral RNA was extracted from plasma, and the genome was obtained using RT-PCR amplification to generate 10 overlapping fragments. Bootscanning, recombination breakpoint analysis, and phylogenetic trees confirmed that 06CM-BA-040 had a genomic structure consistent with two available CRF25_cpx reference sequences. The CRF25_cpx mosaic composition consisted of nine segments derived from subtypes A and G as well as unclassified (U) regions. Subtype G and CRF25_cpx clusters diverged from each other with long branch lengths but were distinct from other known subtypes with high bootstrap support (94%). The epidemiological significance of CRF25_cpx strains is unknown; however, the availability of additional genomic sequences will improve our understanding of the overall genetic diversity within this recombinant form of HIV-1.

authors

Luk KC,Holzmayer V,Ndembi N,Swanson P,Brennan CA,Ngansop C,Mbanya D,Kaptué L,Gürtler L,Devare SG,Hackett J

doi

10.1089/aid.2008.0124

subject

Has Abstract

pub_date

2008-10-01 00:00:00

pages

1309-14

issue

10

eissn

0889-2229

issn

1931-8405

journal_volume

24

pub_type

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