Cybernetic modeling of growth in mixed, substitutable substrate environments: Preferential and simultaneous utilization.

Abstract:

:Growth of microorganisms on substitutable substrate mixtures display diverse growth dynamics characterized by simultaneous or preferential uptake of carbon sources. This article shows that cybernetic modeling concepts which were successful in predicting diauxic growth patterns can be extended to describe simultaneous consumption of substrates. Thus the growth of Escherichia coli on mixtures of glucose and organic acids such as pyruvate, fumarate, and succinate has been described successfully by the cybernetic model presented here showing both diauxic and simultaneous uptake when observed. The model also describes the changes in utilization patterns that occur under changing dilution rates, substrate concentrations, and models of preculturing. The model recognizes the importance of the synthesis of biosynthetic precursors in cell growth through a kinetic structure that is quite general for any mixture of carbon-energy sources. (c) 1996 John Wiley & Sons, Inc.

journal_name

Biotechnol Bioeng

authors

Ramakrishna R,Ramkrishna D,Konopka AE

doi

10.1002/(SICI)1097-0290(19961005)52:1<141::AID-BIT

subject

Has Abstract

pub_date

1996-10-05 00:00:00

pages

141-51

issue

1

eissn

0006-3592

issn

1097-0290

journal_volume

52

pub_type

杂志文章
  • Efficient enzymatic acrylation through transesterification at controlled water activity.

    abstract::Enzymatic acrylation is a process of potentially strong interest to the chemical industry. Direct esterification involving acrylic acid is unfortunately rather slow, with inhibition phenomena appearing at high acid concentrations. In the present study the acrylation of 1-octanol catalyzed by immobilized Candida antarc...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21706

    authors: Nordblad M,Adlercreutz P

    更新日期:2008-04-15 00:00:00

  • Manipulation of microparticles for construction of array patterns by negative dielectrophoresis using multilayered array and grid electrodes.

    abstract::In this study, a useful method was developed to fabricate array patterns of microparticles not on electrode surfaces, but on arbitrary surfaces, using negative-dielectrophoresis (n-DEP). First, electrodes were designed and electric field simulations were performed to manipulate microparticles toward target areas. Base...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.22445

    authors: Ino K,Shiku H,Ozawa F,Yasukawa T,Matsue T

    更新日期:2009-11-01 00:00:00

  • Microbial synthesis of polyhydroxybutyrate from glycerol: gluconeogenesis, molecular weight and material properties of biopolyester.

    abstract::Glycerol is considered as an ideal feedstock for producing bioplastics via bacterial fermentation due to its ubiquity, low price, and high degree of reduction substrate. In this work, we study the yield and cause of limitation in poly(3-hydroxybutyrate) (PHB) production from glycerol. Compared to glucose-based PHB pro...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.24546

    authors: Tanadchangsaeng N,Yu J

    更新日期:2012-11-01 00:00:00

  • Fluorescence-based sensing system for copper using genetically engineered living yeast cells.

    abstract::A whole cell-based optical sensing system for copper was developed based on Saccharomyces cerevisiae cells harboring plasmid pYEX-GFPuv. The basis of this system was the ability of the transcriptional activator protein Ace1 present in S. cerevisiae to control the expression of the reporter protein, GFPuv. When copper ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20331

    authors: Shetty RS,Deo SK,Liu Y,Daunert S

    更新日期:2004-12-05 00:00:00

  • Probing of C-terminal lysine variation in a recombinant monoclonal antibody production using Chinese hamster ovary cells with chemically defined media.

    abstract::C-terminal lysine (C-K) variants are commonly observed in therapeutic monoclonal antibodies and recombinant proteins. Heterogeneity of C-K residues is believed to result from varying degree of proteolysis by endogenous carboxypeptidase(s) during cell culture production. The achievement of batch-to-batch culture perfor...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.24510

    authors: Luo J,Zhang J,Ren D,Tsai WL,Li F,Amanullah A,Hudson T

    更新日期:2012-09-01 00:00:00

  • Operation of mixed-culture immobilized cell reactors for the metabolism of meta- and para-nitrobenzoate by comamonas sp. JS46 and comamonas sp. JS47

    abstract::The treatment of meta- and para-nitrobenzoic acid in an industrial wastestream by Comamonas sp. JS46 and Comamonas sp. JS47 is investigated. The most important feature of the wastestream is the constantly changing concentration ratio of the two isomers. The most extreme occurrence is considered here: the complete chan...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0290(19980705)59:1<21::aid-bit4

    authors: Goodall JL,Thomas SM,Spain JC,Peretti SW

    更新日期:1998-07-05 00:00:00

  • Yeast cell permeabilizing beta-1,3-glucanases: A tool for the integration of downstream processes and metabolic engineering applications to yeast.

    abstract::In this article, we consider the impact on downstream process design resulting from the use of metabolically engineered yeast strains. We address the issue of how manipulation of cell wall permeability can improve the release and subsequent recovery of heterologous products produced in yeast. ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章,评审

    doi:

    authors: Ferrer P,Diers I,Asenjo JA,Andrews BA

    更新日期:1998-04-20 00:00:00

  • Recycle hollow fiber enzyme reactor with flow swing.

    abstract::The hollow fiber enzyme reactor with pulsation developed by Kim and Chang (1983) was operated in a differential mode by recycling a substrate solution, in order to assess the efficiency of ultrafiltration swing. The rates of lactose conversion by beta-galactosidase contained in the shell side of the reactor were measu...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260270813

    authors: Park TH,Kim IH,Chang HN

    更新日期:1985-08-01 00:00:00

  • Towards the industrialization of new biosurfactants: Biotechnological opportunities for the lactone esterase gene from Starmerella bombicola.

    abstract::Although sophorolipids (SLs) produced by S. bombicola are a real showcase for the industrialization of microbial biosurfactants, some important drawbacks are associated with this efficient biological process, e.g., the simultaneous production of acidic and lactonic SLs. Depending on the application, there is a require...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.25815

    authors: Roelants SL,Ciesielska K,De Maeseneire SL,Moens H,Everaert B,Verweire S,Denon Q,Vanlerberghe B,Van Bogaert IN,Van der Meeren P,Devreese B,Soetaert W

    更新日期:2016-03-01 00:00:00

  • Application of hypoosmolar medium to fed-batch culture of hybridoma cells for improvement of culture longevity.

    abstract::Cell culture longevity in fed-batch culture of hybridomas is often limited by elevated medium osmolality caused by repeated nutrient feeding. Shotwise feeding of 10x Dulbecco's modified Eagle's medium (DMEM) concentrates elevated the osmolality of medium up to 540 mOsm/kg at the end of fed-batch culture of S3H5/gamma2...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0290(19990105)62:1<120::aid-bit

    authors: Ryu JS,Lee GM

    更新日期:1999-01-05 00:00:00

  • Mode of action and properties of the beta-xylosidases from Talaromyces emersonii and Trichoderma reesei.

    abstract::Enzymatic hydrolysis of arabinoxylan is an important prerequisite for the utilization of hemicellulose for ethanol fermentation or for making the low calorie sweetener xylitol by catalytic hydrogenation of the generated xylose. This study focus on cloning and characterization of two industrial relevant beta-xylosidase...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20908

    authors: Rasmussen LE,Sørensen HR,Vind J,Viksø-Nielsen A

    更新日期:2006-08-05 00:00:00

  • Tissue-engineering approaches in pancreatic islet transplantation.

    abstract::Pancreatic islet transplantation is a promising alternative to whole-pancreas transplantation as a treatment of type 1 diabetes mellitus. This technique has been extensively developed during the past few years, with the main purpose of minimizing the complications arising from the standard protocols used in organ tran...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章,评审

    doi:10.1002/bit.26821

    authors: Perez-Basterrechea M,Esteban MM,Vega JA,Obaya AJ

    更新日期:2018-12-01 00:00:00

  • Engineering substrate and energy metabolism for living cell production of cytidine-5'-diphosphocholine.

    abstract::Cytidine-5'-diphosphocholine (CDP-choline) is a widely used neuroprotective drug for multiple indications. In industry, CDP-choline is synthesized by a two-step cell culture/permeabilized cell biotransformation method because substrates often do not enter cells in an efficient manner. This study develops a novel one-s...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.27291

    authors: Ren Y,Liu Q,Liu H,Zhou X,Zhang Y,Cai M

    更新日期:2020-05-01 00:00:00

  • Effect of organic acids on the growth and fermentation of ethanologenic Escherichia coli LY01.

    abstract::Hemicellulose residues can be hydrolyzed into a sugar syrup using dilute mineral acids. Although this syrup represents a potential feedstock for biofuel production, toxic compounds generated during hydrolysis limit microbial metabolism. Escherichia coli LY01, an ethanologenic biocatalyst engineered to ferment the mixe...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0290(1999)66:4<203::aid-bit1>3.

    authors: Zaldivar J,Ingram LO

    更新日期:1999-01-01 00:00:00

  • Biosorption of lead and nickel by biomass of marine algae.

    abstract::Screening tests of different marine algae biomas types revealed a high passive biosorptive uptake of lead up to 270 mg Pb/g of biomass in some brown marine algae. Members of the order Fucales perfomed particularly well in this descending sequence: Fucus > Ascophyllum > Sargassum. Although decreasing the swelling of we...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260431102

    authors: Holan ZR,Volesky B

    更新日期:1994-05-01 00:00:00

  • Remote delivery of hydroxyl radicals via secondary chemistry of a nonthermal plasma effluent.

    abstract::Electron paramagnetic resonance spectroscopy is used to observe hydroxyl radicals produced by an atmospheric pressure nonthermal plasma device at distances greater than 1 m from the discharge. The plasma device is an indirect treatment setup with closed loop airflow and hydrogen peroxide additives that is effective in...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.24853

    authors: Plimpton SR,Gołkowski M,Mitchell DG,Austin C,Eaton SS,Eaton GR,Gołkowski C,Voskuil M

    更新日期:2013-07-01 00:00:00

  • Fundamental questions in optimizing ion-exchange chromatography of proteins using computer-aided process design.

    abstract::The major objectives for preparative protein chromatography are maximal loading and increased flow rate while maintaining defined resolution. Conventionally a series of chromatographic experiments are performed and the optimal conditions are selected according to the separation criteria. Computer-aided process design ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19961020)52:2<223::AID-BIT

    authors: Jungbauer A,Kaltenbrunner O

    更新日期:1996-10-20 00:00:00

  • Fermentation kinetics of recombinant yeast in batch and fed-batch cultures.

    abstract::Fed-batch cultures of recombinant microorganisms have attracted attention as they can separate cell growth stage from cloned-gene expression phase during fermentations. In this work, the effect of different glucose feeding strategies on cell growth and cloned gene expression was studied during aerobic fed-batch fermen...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260400115

    authors: Patkar A,Seo JH

    更新日期:1992-06-05 00:00:00

  • EGFR-targeted Chimeras of Pseudomonas ToxA released into the extracellular milieu by attenuated Salmonella selectively kill tumor cells.

    abstract::Tumor-targeted Salmonella VNP20009 preferentially replicate within tumor tissue and partially suppress tumor growth in murine tumor models. These Salmonella have the ability to locally induce apoptosis when they are in direct contact with cancer cells but they lack significant bystander killing, which may correlate wi...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.26026

    authors: Quintero D,Carrafa J,Vincent L,Bermudes D

    更新日期:2016-12-01 00:00:00

  • Process hydraulics, distributed bacterial states, and biological phosphorus removal from wastewater.

    abstract::Hydraulic characteristics of biological wastewater treatment systems were shown to affect bacterial state distributions and system performance through mathematical simulations. The term "state" is used here to mean the microbial storage product and biomass content of a bacterium. The traditional approach to simulating...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20911

    authors: Schuler AJ

    更新日期:2006-08-05 00:00:00

  • The production of cellulase in a spouted bed fermentor using cells immobilized in biomass support particles.

    abstract::Continuous cellulase production by Trichoderma viride QM 9123, immobilized in 6 mm diameter, spherical, stainless steel biomass support particles, has been achieved using a medium containing glucose as the main carbon source. Experiments were carried out in a 10-L spouted bed fermentor. In this type of reactor-recycle...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260280107

    authors: Webb C,Fukuda H,Atkinson B

    更新日期:1986-01-01 00:00:00

  • Physiological response of Clostridium carboxidivorans during conversion of synthesis gas to solvents in a gas-fed bioreactor.

    abstract::Clostridium carboxidivorans P7 is one of three microbial catalysts capable of fermenting synthesis gas (mainly CO, CO(2) , and H(2) ) to produce the liquid biofuels ethanol and butanol. Gasification of feedstocks to produce synthesis gas (syngas), followed by microbial conversion to solvents, greatly expands the diver...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.24549

    authors: Ukpong MN,Atiyeh HK,De Lorme MJ,Liu K,Zhu X,Tanner RS,Wilkins MR,Stevenson BS

    更新日期:2012-11-01 00:00:00

  • Soluble microbial products (SMP) in anaerobic chemostats.

    abstract::The production of soluble microbial products (SMP) in anaerobic systems was evaluated using chemostat reactors. Results from steady-state and tracer experiments with (14)C-glucose and (14)C-acetate showed that significant amounts of SMP were produced during the acidogenesis of glucose, but that SMP did not accumulate ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260440904

    authors: Noguera DR,Araki N,Rittmann BE

    更新日期:1994-11-05 00:00:00

  • The half-saturation coefficient for dissolved oxygen: A dynamic method for its determination and its effect on dual species competition.

    abstract::A simple approach was developed to determine the half-saturation coefficient for dissolved oxygen (K(DO)) for three bacteria by maintaining a constant oxygen concentration in continuous culture, and employing a dynamic method to obtain the specific growth rate (mu) for each species. Measurement of mu at selected disso...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260250209

    authors: Hao OJ,Richard MG,Jenkins D,Blanch HW

    更新日期:1983-02-01 00:00:00

  • Survival of aging CD264+ and CD264- populations of human bone marrow mesenchymal stem cells is independent of colony-forming efficiency.

    abstract::In vivo mesenchymal stem cell (MSC) survival is relevant to therapeutic applications requiring engraftment and potentially to nonengraftment applications as well. MSCs are a mixture of progenitors at different stages of cellular aging, but the contribution of this heterogeneity to the survival of MSC implants is unkno...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.27195

    authors: Madsen SD,Jones SH,Tucker HA,Giler MK,Muller DC,Discher CT,Russell KC,Dobek GL,Sammarco MC,Bunnell BA,O'Connor KC

    更新日期:2020-01-01 00:00:00

  • Adapting viral safety assurance strategies to continuous processing of biological products.

    abstract::There has been a recent drive in commercial large-scale production of biotechnology products to convert current batch mode processing to continuous processing manufacturing. There have been reports of model systems capable of adapting and linking upstream and downstream technologies into a continuous manufacturing pip...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章,评审

    doi:10.1002/bit.26060

    authors: Johnson SA,Brown MR,Lute SC,Brorson KA

    更新日期:2017-01-01 00:00:00

  • Growth dynamics of a methylotroph (Methylomonas L3) in continuous cultures. II. Growth inhibition and comparison against an unstructured model.

    abstract::High methanol concentrations have a negative effect on the growth rate and the biomass yield of growth transients induced by methanol pulses in continuous cultures of Methylomonas L3. The physiological basis of this effect is investigated by measuring the effect of the methanol pulse on the cell energy charge (EC) and...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260290110

    authors: Chu IM,Papoutsakis ET

    更新日期:1987-01-01 00:00:00

  • Regulation of lac operon expression in mixed sugar chemostat cultures.

    abstract::Expression of the lactose (lac) operon in the Escherichia coli chromosome has been studied in mixed-sugar chemostat cultures under steady-state and transient conditions. A unified model has been formulated which involves regulation of active inducer (lactose) transport, promoter-operator regulated expression of the la...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260290812

    authors: Ray NG,Vieth WR,Venkatasubramanian K

    更新日期:1987-06-01 00:00:00

  • Elucidation of enzyme control mechanisms using macroscopic measurements in a mixed substrate fermentation system.

    abstract::The objective of this work was to relate macroscopically measurable on-line fermentation parameters such as dissolved oxygen, off-gas oxygen and carbon dioxide, and cell mass, to the controlled production of key intracellular enzymes under carbon limited conditions. Both batch and perturbed batch aerobic fermentations...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260310406

    authors: Pih N,De Bernardez E,Dhurjati P

    更新日期:1988-03-01 00:00:00

  • Quantitative assessment of uncertainty in the optimization of metabolic pathways.

    abstract::The S-System formalism provides a popular, versatile and mathematically tractable representation of metabolic pathways. At steady-state, after a logarithmic transformation, the S-System representation reduces into a system of linear equations. Thus, the maximization of a particular metabolite concentration or a flux s...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19971020)56:2<145::AID-BIT

    authors: Petkov SB,Maranas CD

    更新日期:1997-10-20 00:00:00