Large-scale analysis of the GRAS gene family in Arabidopsis thaliana.

Abstract:

:GRAS proteins belong to a plant-specific transcription factor family. Currently, 33 GRAS members including a putative expressed pseudogene have been identified in the Arabidopsis genome. With a reverse genetic approach, we have constructed a "phenome-ready unimutant collection" of the GRAS genes in Arabidopsis thaliana. Of this collection, we focused on loss-of-function mutations in 23 novel GRAS members. Under standard conditions, homozygous mutants have no obvious morphological phenotypes compared with those of wild-type plants. Expression analysis of GRAS genes using quantitative real-time RT-PCR (qRT-PCR), microarray data mining, and promoter::GUS reporter fusions revealed their tissue-specific expression patterns. Our analysis of protein-protein interaction and subcellular localization of individual GRAS members indicated their roles as transcription regulators. In our yeast two-hybrid (Y2H) assay, we confirmed the protein-protein interaction between SHORT-ROOT (SHR) and SCARECROW (SCR). Furthermore, we identified a new SHR-interacting protein, SCARECROW-LIKE23 (SCL23), which is the most closely related to SCR. Our large-scale analysis provides a comprehensive evaluation on the Arabidopsis GRAS members, and also our phenome-ready unimutant collection will be a useful resource to better understand individual GRAS proteins that play diverse roles in plant growth and development.

journal_name

Plant Mol Biol

journal_title

Plant molecular biology

authors

Lee MH,Kim B,Song SK,Heo JO,Yu NI,Lee SA,Kim M,Kim DG,Sohn SO,Lim CE,Chang KS,Lee MM,Lim J

doi

10.1007/s11103-008-9345-1

subject

Has Abstract

pub_date

2008-08-01 00:00:00

pages

659-70

issue

6

eissn

0167-4412

issn

1573-5028

journal_volume

67

pub_type

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