Delimiting cohesion species: extreme population structuring and the role of ecological interchangeability.

Abstract:

:Species exhibiting morphological homogeneity and strong population structuring present challenging taxonomic problems: morphology-based approaches infer few species, whereas genetic approaches often indicate more. Morphologically cryptic, yet genetically divergent species groups require alternative approaches to delimiting species that assess adaptive divergence and ecological interchangeability of lineages. We apply such an approach to Promyrmekiaphila, a small genus (three nominal taxa) of trapdoor spiders endemic to northern California to define cohesion species (lineages that are genetically exchangeable and ecologically interchangeable). Genetic exchangeability is evaluated using standard phylogeographical techniques (e.g. nested clade analysis); ecological interchangeability is assessed using two GIS-based approaches. First, climatic values are extracted from layer data for each locality point and utilized in a principal components analysis followed by MANOVA. Second, niche-based distribution models of genetically divergent lineages are created using a maximum-entropy modelling approach; the amount of overlap among lineages is calculated and evaluated against a probability distribution of null overlap. Lineages that have significant amounts of predicted overlap are considered ecologically interchangeable. Based on a synthetic evaluation of ecological interchangeability, geographical concordance, and morphological differentiation, we conclude that Promyrmekiaphila comprises six cohesion species, five of which are cryptic (i.e. undetectable by conventional means).

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Stockman AK,Bond JE

doi

10.1111/j.1365-294X.2007.03389.x

subject

Has Abstract

pub_date

2007-08-01 00:00:00

pages

3374-92

issue

16

eissn

0962-1083

issn

1365-294X

pii

MEC3389

journal_volume

16

pub_type

杂志文章
  • Plant dispersal in the sub-Antarctic inferred from anisotropic genetic structure.

    abstract::Climatic conditions and landscape features often strongly affect species' local distribution patterns, dispersal, reproduction and survival and may therefore have considerable impacts on species' fine-scale spatial genetic structure (SGS). In this study, we demonstrate the efficacy of combining fine-scale SGS analyses...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05372.x

    authors: Born C,Le Roux PC,Spohr C,McGeoch MA,Van Vuuren BJ

    更新日期:2012-01-01 00:00:00

  • Association between Wolbachia and Spiroplasma within Drosophila neotestacea: an emerging symbiotic mutualism?

    abstract::Interspecific mutualism can evolve when specific lineages of different species tend to be associated with each other from one generation to the next. Different maternally transmitted endosymbionts occurring within the same cytoplasmic lineage fulfil this requirement. Drosophila neotestacea is infected with maternally ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04448.x

    authors: Jaenike J,Stahlhut JK,Boelio LM,Unckless RL

    更新日期:2010-01-01 00:00:00

  • Drift, not selection, shapes toll-like receptor variation among oceanic island populations.

    abstract::Understanding the relative role of different evolutionary forces in shaping the level and distribution of functional genetic diversity among natural populations is a key issue in evolutionary and conservation biology. To do so accurately genetic data must be analysed in conjunction with an unambiguous understanding of...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13437

    authors: Gonzalez-Quevedo C,Spurgin LG,Illera JC,Richardson DS

    更新日期:2015-12-01 00:00:00

  • Strong dispersal in a parasitoid wasp overwhelms habitat fragmentation and host population dynamics.

    abstract::The population dynamics of a parasite depend on species traits, host dynamics and the environment. Those dynamics are reflected in the genetic structure of the population. Habitat fragmentation has a greater impact on parasites than on their hosts because resource distribution is increasingly fragmented for species at...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13696

    authors: Couchoux C,Seppä P,van Nouhuys S

    更新日期:2016-07-01 00:00:00

  • Site-specific genetic divergence in parallel hybrid zones suggests nonallopatric evolution of reproductive barriers.

    abstract::The evolution of reproductive isolation in the presence of gene flow is supported by theoretical models but rarely by data. Empirical support might be gained from studies of parallel hybrid zones between interbreeding taxa. We analysed gene flow over two hybrid zones separating ecotypes of Littorina saxatilis to test ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2006.03067.x

    authors: Panova M,Hollander J,Johannesson K

    更新日期:2006-11-01 00:00:00

  • Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

    abstract::Genetic variation is often arrayed in latitudinal or altitudinal clines, reflecting either adaptation along environmental gradients, migratory routes, or both. For forest trees, climate is one of the most important drivers of adaptive phenotypic traits. Correlations of single and multilocus genotypes with environmenta...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04698.x

    authors: Eckert AJ,Bower AD,González-Martínez SC,Wegrzyn JL,Coop G,Neale DB

    更新日期:2010-09-01 00:00:00

  • Mitochondrial phylogeography of the Eurasian beaver Castor fiber L.

    abstract::Nucleotide variation in an approximately 490 bp fragment of the mitochondrial DNA control region (mtDNA CR) was used to describe the genetic variation and phylogeographical pattern in the Eurasian beaver (Castor fiber) over its entire range. The sampling effort was focused on the relict populations that survived a dra...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02704.x

    authors: Durka W,Babik W,Ducroz JF,Heidecke D,Rosell F,Samjaa R,Saveljev AP,Stubbe A,Ulevicius A,Stubbe M

    更新日期:2005-10-01 00:00:00

  • Recommendations for utilizing and reporting population genetic analyses: the reproducibility of genetic clustering using the program STRUCTURE.

    abstract::Reproducibility is the benchmark for results and conclusions drawn from scientific studies, but systematic studies on the reproducibility of scientific results are surprisingly rare. Moreover, many modern statistical methods make use of 'random walk' model fitting procedures, and these are inherently stochastic in the...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2012.05754.x

    authors: Gilbert KJ,Andrew RL,Bock DG,Franklin MT,Kane NC,Moore JS,Moyers BT,Renaut S,Rennison DJ,Veen T,Vines TH

    更新日期:2012-10-01 00:00:00

  • The ectomycorrhizal fungus Amanita phalloides was introduced and is expanding its range on the west coast of North America.

    abstract::The deadly poisonous Amanita phalloides is common along the west coast of North America. Death cap mushrooms are especially abundant in habitats around the San Francisco Bay, California, but the species grows as far south as Los Angeles County and north to Vancouver Island, Canada. At different times, various authors ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2008.04030.x

    authors: Pringle A,Adams RI,Cross HB,Bruns TD

    更新日期:2009-03-01 00:00:00

  • A restricted hybrid zone between native and introduced red fox (Vulpes vulpes) populations suggests reproductive barriers and competitive exclusion.

    abstract::Introduced species can threaten native taxa in multiple ways, including competition and hybridization, which can reduce fitness, alter ecological niches or swamp native genomes. Encroachment and hybridization by introduced species also provide opportunities to study the dynamics of invasiveness and hybridization durin...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2010.04943.x

    authors: Sacks BN,Moore M,Statham MJ,Wittmer HU

    更新日期:2011-01-01 00:00:00

  • Molecular analysis reveals high compartmentalization in aphid-primary parasitoid networks and low parasitoid sharing between crop and noncrop habitats.

    abstract::The ecosystem service of insect pest regulation by natural enemies, such as primary parasitoids, may be enhanced by the presence of uncultivated, semi-natural habitats within agro-ecosystems, although quantifying such host-parasitoid interactions is difficult. Here, we use rRNA 16S gene sequencing to assess both the l...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.12701

    authors: Derocles SA,Le Ralec A,Besson MM,Maret M,Walton A,Evans DM,Plantegenest M

    更新日期:2014-08-01 00:00:00

  • Connectivity, small islands and large distances: the Cellana strigilis limpet complex in the Southern Ocean.

    abstract::The Southern Ocean contains some of the most isolated islands on Earth, and fundamental questions remain regarding their colonization and the connectivity of their coastal biotas. Here, we conduct a genetic investigation into the Cellana strigilis (limpet) complex that was originally classified based on morphological ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05185.x

    authors: Reisser CM,Wood AR,Bell JJ,Gardner JP

    更新日期:2011-08-01 00:00:00

  • Genetic monitoring to assess the success of restoring rare plant populations with mixed gene pools.

    abstract::Increasing genetic diversity and maintaining evolutionary processes are primary goals of conservation translocations, which involve the intentional movement of an at-risk species to establish new populations or augment existing populations, with the ultimate goal of reversing declines. Much debate has focused on how t...

    journal_title:Molecular ecology

    pub_type: 评论,杂志文章

    doi:10.1111/mec.15658

    authors: Albrecht MA,Edwards CE

    更新日期:2020-11-01 00:00:00

  • Colonization history of the high-arctic pink-footed goose Anser brachyrhynchus.

    abstract::Population structure and phylogeography of the pink-footed goose, Anser brachyrhynchus Baillon 1833, was studied using mtDNA control region sequences (221 bp) from 142 individuals. Present breeding areas of the species in Greenland, Iceland, and Svalbard were largely covered by ice during the late Pleistocene. In pair...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02380.x

    authors: Ruokonen M,Aarvak T,Madsen J

    更新日期:2005-01-01 00:00:00

  • Inbreeding and inbreeding avoidance in wild giant pandas.

    abstract::Inbreeding can have negative consequences on population and individual fitness, which could be counteracted by inbreeding avoidance mechanisms. However, the inbreeding risk and inbreeding avoidance mechanisms in endangered species are less studied. The giant panda, a solitary and threatened species, lives in many smal...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14284

    authors: Hu Y,Nie Y,Wei W,Ma T,Van Horn R,Zheng X,Swaisgood RR,Zhou Z,Zhou W,Yan L,Zhang Z,Wei F

    更新日期:2017-10-01 00:00:00

  • Stability of genetic variance and covariance for reproductive characters in the face of climate change in a wild bird population.

    abstract::Global warming has had numerous effects on populations of animals and plants, with many species in temperate regions experiencing environmental change at unprecedented rates. Populations with low potential for adaptive evolutionary change and plasticity will have little chance of persistence in the face of environment...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03436.x

    authors: Garant D,Hadfield JD,Kruuk LE,Sheldon BC

    更新日期:2008-01-01 00:00:00

  • Microgeographic population structure of green swordail fish: genetic differentiation despite abundant migration.

    abstract::Swordtails (Xiphophorus; Poeciliidae) have figured prominently in research on fish mating behaviours, sexual selection, and carcinogenesis, but their population structures and dispersal patterns have been relatively neglected. Using nine microsatellite loci, we estimated genetic differentiation in Xiphophorus helleri ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2009.04464.x

    authors: Tatarenkov A,Healey CI,Avise JC

    更新日期:2010-01-01 00:00:00

  • Genetic structure and distinctness of Apis mellifera L. populations from the Canary Islands.

    abstract::The genetic structure of Apis mellifera populations from the Canary Islands has been assessed by mitochondrial (restriction fragment length polymorphisms of the intergenic transfer RNAleu-COII region) and nuclear (microsatellites) studies. These populations show a low level of genetic variation in terms of average num...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2001.01303.x

    authors: De la Rúa P,Galián J,Serrano J,Moritz RF

    更新日期:2001-07-01 00:00:00

  • Diversification of sympatric broadcast-spawning limpets (Cellana spp.) within the Hawaiian archipelago.

    abstract::Speciation remains a central enigma in biology, and nowhere is this more apparent than in shallow tropical seas where biodiversity rivals that of tropical rainforests. Obvious barriers to gene flow are few and most marine species have a highly dispersive larval stage, which should greatly decrease opportunities for sp...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2011.05081.x

    authors: Bird CE,Holland BS,Bowen BW,Toonen RJ

    更新日期:2011-05-01 00:00:00

  • The Leptynia hispanica species complex (Insecta Phasmida): polyploidy, parthenogenesis, hybridization and more.

    abstract::The Leptynia hispanica stick insect species complex includes bisexuals, triploid and tetraploid parthenogenetic populations, suggesting that polyploidy has played a central role in the evolution of this complex. An analysis of karyotype, mitochondrial DNA (cox2) and nuclear DNA (ef1-alpha) markers was carried out to c...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2007.03471.x

    authors: Ghiselli F,Milani L,Scali V,Passamonti M

    更新日期:2007-10-01 00:00:00

  • Selective sweeps and intercontinental migration in the cosmopolitan moss Ceratodon purpureus (Hedw.) Brid.

    abstract::The moss Ceratodon purpureus has long been used as a model system in plant development and physiology. However, the molecular population genetics of the species remains virtually unexplored. In this study, we used population genetic analyses of DNA sequence data from three unlinked loci (atpB-rbcL spacer, adk, and phy...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2005.02484.x

    authors: McDaniel SF,Shaw AJ

    更新日期:2005-04-01 00:00:00

  • Colonization history and introduction dynamics of capsella bursa-pastoris (Brassicaceae) in north america: isozymes and quantitative traits

    abstract::Multilocus isozyme genotypic composition for aspartate aminotransferase (AAT), leucine aminopeptidase (LAP) and glutamate dehydrogenase (GDH) was studied for Capsella in the source continent, Europe (9000 plants from 593 populations), and in the colonized continent, North America (2700 plants from 88 populations). Nor...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00752.x

    authors: Neuffer B,Hurka H

    更新日期:1999-10-01 00:00:00

  • The coral immune response facilitates protection against microbes during tissue regeneration.

    abstract::Increasing physical damage on coral reefs from predation, storms and anthropogenic disturbances highlights the need to understand the impact of injury on the coral immune system. In this study, we examined the regulation of the coral immune response over 10 days following physical trauma artificially inflicted on in s...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.13257

    authors: van de Water JA,Ainsworth TD,Leggat W,Bourne DG,Willis BL,van Oppen MJ

    更新日期:2015-07-01 00:00:00

  • Higher contribution of globally rare bacterial taxa reflects environmental transitions across the surface ocean.

    abstract::Microbial taxa range from being ubiquitous and abundant across space to extremely rare and endemic, depending on their ecophysiology and on different processes acting locally or regionally. However, little is known about how cosmopolitan or rare taxa combine to constitute communities and whether environmental variatio...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.15026

    authors: Ruiz-González C,Logares R,Sebastián M,Mestre M,Rodríguez-Martínez R,Galí M,Sala MM,Acinas SG,Duarte CM,Gasol JM

    更新日期:2019-04-01 00:00:00

  • The giant mycoheterotrophic orchid Erythrorchis altissima is associated mainly with a divergent set of wood-decaying fungi.

    abstract::The climbing orchid Erythrorchis altissima is the largest mycoheterotroph in the world. Although previous in vitro work suggests that E. altissima has a unique symbiosis with wood-decaying fungi, little is known about how this giant orchid meets its carbon and nutrient demands exclusively via mycorrhizal fungi. In thi...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14524

    authors: Ogura-Tsujita Y,Gebauer G,Xu H,Fukasawa Y,Umata H,Tetsuka K,Kubota M,Schweiger JM,Yamashita S,Maekawa N,Maki M,Isshiki S,Yukawa T

    更新日期:2018-03-01 00:00:00

  • Jumping genes: Genomic ballast or powerhouse of biological diversification.

    abstract::Studying hybridization has the potential to elucidate challenging questions in evolutionary biology such as the nature of adaptive genetic variation and reproductive isolation. A growing body of work highlights that the merging of divergent genomes goes beyond the reshuffling of standing variation from related species...

    journal_title:Molecular ecology

    pub_type: 评论,新闻

    doi:10.1111/mec.14247

    authors: Choudhury RR,Parisod C

    更新日期:2017-09-01 00:00:00

  • Long-distance gene flow and cross-Andean dispersal of lowland rainforest bees (Apidae: Euglossini) revealed by comparative mitochondrial DNA phylogeography.

    abstract::Euglossine bees (Apidae; Euglossini) exclusively pollinate hundreds of orchid species and comprise up to 25% of bee species richness in neotropical rainforests. As one of the first studies of comparative phylogeography in a neotropical insect group, we performed a mitochondrial DNA (mtDNA)-based analysis of 14 eugloss...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/j.1365-294X.2004.02374.x

    authors: Dick CW,Roubik DW,Gruber KF,Bermingham E

    更新日期:2004-12-01 00:00:00

  • Late Quaternary distributional stasis in the submediterranean mountain plant Anthyllis montana L. (Fabaceae) inferred from ITS sequences and amplified fragment length polymorphism markers.

    abstract::Anthyllis montana is a submediterranean, herbaceous plant of the southern and central European mountains. The internal transcribed spacer (ITS) regions of nuclear ribosomal DNA were sequenced from multiple accessions of the species and several closely related taxa. In addition, amplified fragment length polymorphism (...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.2002.01446.x

    authors: Kropf M,Kadereit JW,Comes HP

    更新日期:2002-03-01 00:00:00

  • The use of amplified fragment length polymorphism (AFLP) in the isolation of sex-specific markers.

    abstract::Sex identification is a problem in research and conservation. It can often be solved using a DNA test but this is only an option if a sex-specific marker is available. Such markers can be identified using the amplified fragment length polymorphism (AFLP) technique. This is usually a taxonomic method, as it produces a ...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1046/j.1365-294x.1999.00578.x

    authors: Griffiths R,Orr K

    更新日期:1999-04-01 00:00:00

  • Integrating genomic and phenotypic data to evaluate alternative phylogenetic and species delimitation hypotheses in a recent evolutionary radiation of grasshoppers.

    abstract::Although resolving phylogenetic relationships and establishing species limits are primary goals of systematics, these tasks remain challenging at both conceptual and analytical levels. Here, we integrated genomic and phenotypic data and employed a comprehensive suite of coalescent-based analyses to develop and evaluat...

    journal_title:Molecular ecology

    pub_type: 杂志文章

    doi:10.1111/mec.14504

    authors: Noguerales V,Cordero PJ,Ortego J

    更新日期:2018-03-01 00:00:00