Biogeochemical consequences of rapid microbial turnover and seasonal succession in soil.

Abstract:

:Soil microbial communities have the metabolic and genetic capability to adapt to changing environmental conditions on very short time scales. In this paper we combine biogeochemical and molecular approaches to reveal this potential, showing that microbial biomass can turn over on time scales of days to months in soil, resulting in a succession of microbial communities over the course of a year. This new understanding of the year-round turnover and succession of microbial communities allows us for the first time to propose a temporally explicit N cycle that provides mechanistic hypotheses to explain both the loss and retention of dissolved organic N (DON) and inorganic N (DIN) throughout the year in terrestrial ecosystems. In addition, our results strongly support the hypothesis that turnover of the microbial community is the largest source of DON and DIN for plant uptake during the plant growing season. While this model of microbial biogeochemistry is derived from observed dynamics in the alpine, we present several examples from other ecosystems to indicate that the general ideas of biogeochemical fluxes being linked to turnover and succession of microbial communities are applicable to a wide range of terrestrial ecosystems.

journal_name

Ecology

journal_title

Ecology

authors

Schmidt SK,Costello EK,Nemergut DR,Cleveland CC,Reed SC,Weintraub MN,Meyer AF,Martin AM

doi

10.1890/06-0164

subject

Has Abstract

pub_date

2007-06-01 00:00:00

pages

1379-85

issue

6

eissn

0012-9658

issn

1939-9170

journal_volume

88

pub_type

杂志文章

相关文献

ECOLOGY文献大全
  • Beta diversity of marine bacteria depends on temporal scale.

    abstract::Factors controlling the spatial distribution of bacterial diversity have been intensely studied, whereas less is known about temporal changes. To address this, we tested whether the mechanisms that underlie bacterial temporal beta-diversity vary across different scales in three marine microbial communities. While seas...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/12-2125.1

    authors: Hatosy SM,Martiny JB,Sachdeva R,Steele J,Fuhrman JA,Martiny AC

    更新日期:2013-09-01 00:00:00

  • Metrics for comparing stand structure and dynamics between Ecological Reserves and managed forest of Maine, USA.

    abstract::A data set of common forest metrics was prepared using inventory data from Ecological Reserves in Maine, northeastern USA. An Ecological Reserve is generally defined as an area where timber harvesting does not occur and natural disturbance events are allowed to proceed without significant human influence. Beginning in...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2500

    authors: Kuehne C,Puhlick J,Weiskittel A,Cutko A,Cameron D,Sferra N,Schlawin J

    更新日期:2018-12-01 00:00:00

  • Incorporating animal behavior into seed dispersal models: implications for seed shadows.

    abstract::Seed dispersal fundamentally influences plant population and community dynamics but is difficult to quantify directly. Consequently, models are frequently used to describe the seed shadow (the seed deposition pattern of a plant population). For vertebrate-dispersed plants, animal behavior is known to influence seed sh...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/0012-9658(2006)87[3160:iabisd]2.0.co;2

    authors: Russo SE,Portnoy S,Augspurger CK

    更新日期:2006-12-01 00:00:00

  • Favorable effect of mycorrhizae on biomass production efficiency exceeds their carbon cost in a fertilization experiment.

    abstract::Biomass production efficiency (BPE), the ratio of biomass production to photosynthesis, varies greatly among ecosystems and typically increases with increasing nutrient availability. Reduced carbon partitioning to mycorrhizal fungi (i.e., per unit photosynthesis) is the hypothesized underlying mechanism, as mycorrhiza...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2502

    authors: Verlinden MS,Ven A,Verbruggen E,Janssens IA,Wallander H,Vicca S

    更新日期:2018-11-01 00:00:00

  • Shifts in southern Wisconsin forest canopy and understory richness, composition, and heterogeneity.

    abstract::We resurveyed the under- and overstory species composition of 94 upland forest stands in southern Wisconsin in 2002-2004 to assess shifts in canopy and understory richness, composition, and heterogeneity relative to the original surveys in 1949-1950. The canopy has shifted from mostly oaks (Quercus spp.) toward more m...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/07-1129.1

    authors: Rogers DA,Rooney TP,Olson D,Waller DM

    更新日期:2008-09-01 00:00:00

  • Plastic response to a proxy cue of predation risk when direct cues are unreliable.

    abstract::Responses to proximate cues that directly affect fitness or cues directly released by selective agents are well-documented forms of phenotypic plasticity. For example, to reduce predation risk, prey change phenotype in response to light level (e.g., moon phase) when light affects predation risk from visual predators, ...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/12-2250.1

    authors: Miehls AL,McAdam AG,Bourdeau PE,Peacor SD

    更新日期:2013-10-01 00:00:00

  • Anthropogenic N deposition, fungal gene expression, and an increasing soil carbon sink in the Northern Hemisphere.

    abstract::Terrestrial ecosystems in the Northern Hemisphere are a globally important sink for anthropogenic CO2 in the Earth's atmosphere, slowing its accumulation as well as the pace of climate warming. With the use of a long-term field experiment (ca. 20 yr), we show that the expression of fungal class II peroxidase genes, wh...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2804

    authors: Zak DR,Argiroff WA,Freedman ZB,Upchurch RA,Entwistle EM,Romanowicz KJ

    更新日期:2019-10-01 00:00:00

  • Stream thermal heterogeneity prolongs aquatic-terrestrial subsidy and enhances riparian spider growth.

    abstract::Emerging aquatic insects from streams are important food sources for riparian predators, yet their availability is seasonally limited. Spatial heterogeneity in stream water temperature was found to spatially desynchronize the emergence timing of aquatic insects, and prolong their flight period, potentially enhancing c...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.1552

    authors: Uno H

    更新日期:2016-10-01 00:00:00

  • Parasites of Trinidadian guppies: evidence for sex- and age-specific trait-mediated indirect effects of predators.

    abstract::Predation pressure can alter the morphology, physiology, life history, and behavior of prey; each of these in turn can change how surviving prey interact with parasites. These trait-mediated indirect effects may change in direction or intensity during growth or, in sexually dimorphic species, between the sexes. The Tr...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/14-0495.1

    authors: Stephenson JF,van Oosterhout C,Mohammed RS,Cable J

    更新日期:2015-02-01 00:00:00

  • On the growth of locally interacting plants: differential equations for the dynamics of spatial moments.

    abstract::Ecologists are faced with the challenge of how to scale up from the activities of individual plants and animals to the macroscopic dynamics of populations and communities. It is especially difficult to do this in communities of plants where the fate of individuals depends on their immediate neighbors rather than an av...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/13-0147.1

    authors: Adams TP,Holland EP,Law R,Plank MJ,Raghib M

    更新日期:2013-12-01 00:00:00

  • Plants trap pollen to feed predatory arthropods as an indirect resistance against herbivory.

    abstract::Plants commonly employ indirect resistance to reduce herbivory by provisioning predatory arthropod populations with additional resources. Numerous predatory arthropods consume pollen that is entrapped on dense, wooly trichomes of plants. Over two seasons, we supplemented pollen on the wooly leaves of turkey mullein, C...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2867

    authors: Van Wyk JI,Krimmel BA,Crova L,Pearse IS

    更新日期:2019-11-01 00:00:00

  • Using multilevel spatial models to understand salamander site occupancy patterns after wildfire.

    abstract::Studies of the distribution of elusive forest wildlife have suffered from the confounding of true presence with the uncertainty of detection. Occupancy modeling, which incorporates probabilities of species detection conditional on presence, is an emerging approach for reducing observation bias. However, the current li...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/10-0322.1

    authors: Chelgren ND,Adams MJ,Bailey LL,Bury RB

    更新日期:2011-02-01 00:00:00

  • Tree diversity promotes growth of late successional species despite increasing deer damage in a restored forest.

    abstract::The role of tree diversity in restored forests and its impact on key ecological processes like growth and resistance to herbivory has become increasingly important. We analyzed height growth and white-tailed deer Odocoileus virginianus browsing damage to saplings of 16 broadleaved tree species in a large-scale (13 ha)...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.3063

    authors: Devaney JL,Pullen J,Cook-Patton SC,Burghardt KT,Parker JD

    更新日期:2020-08-01 00:00:00

  • Monotonicity-constrained species distribution models.

    abstract::Flexible modeling frameworks for species distribution models based on generalized additive models that allow for smooth, nonlinear effects and interactions are of increasing importance in ecology. Commonly, the flexibility of such smooth function estimates is controlled by means of penalized estimation procedures. How...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/10-2276.1

    authors: Hofner B,Müller J,Hothorn T

    更新日期:2011-10-01 00:00:00

  • Feedbacks between bivalve density, flow, and suspended sediment concentration on patch stable states.

    abstract::We explore the role of biophysical feedbacks occurring at the patch scale (spatial scale of tens of meters) that influence bivalve physiological condition and affect patch stability by developing a numerical model for the pinnid bivalve, Atrina zelandica, in cohesive sediments. Simulated feedbacks involve bivalve dens...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/0012-9658(2006)87[2862:fbbdfa]2.0.co;2

    authors: Coco G,Thrush SF,Green MO,Hewitt JE

    更新日期:2006-11-01 00:00:00

  • Nematomorph parasites drive energy flow through a riparian ecosystem.

    abstract::Parasites are ubiquitous in natural systems and ecosystem-level effects should be proportional to the amount of biomass or energy flow altered by the parasites. Here we quantified the extent to which a manipulative parasite altered the flow of energy through a forest-stream ecosystem. In a Japanese headwater stream, c...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/09-1565.1

    authors: Sato T,Watanabe K,Kanaiwa M,Niizuma Y,Harada Y,Lafferty KD

    更新日期:2011-01-01 00:00:00

  • Fungal endophytes directly increase the competitive effects of an invasive forb.

    abstract::Competitive outcomes among plants can vary in different abiotic and biotic conditions. Here we tested the effects of two phylotypes of Alternaria endophytes on the growth, competitive effects, and competitive responses of the exotic invasive forb Centaurea stoebe. Centaurea stoebe was a better competitor against North...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/11-1347.1

    authors: Aschehoug ET,Metlen KL,Callaway RM,Newcombe G

    更新日期:2012-01-01 00:00:00

  • Fish introductions and light modulate food web fluxes in tropical streams: a whole-ecosystem experimental approach.

    abstract::Decades of ecological study have demonstrated the importance of top-down and bottom-up controls on food webs, yet few studies within this context have quantified the magnitude of energy and material fluxes at the whole-ecosystem scale. We examined top-down and bottom-up effects on food web fluxes using a field experim...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.1530

    authors: Collins SM,Thomas SA,Heatherly T 2nd,MacNeill KL,Leduc AO,López-Sepulcre A,Lamphere BA,El-Sabaawi RW,Reznick DN,Pringle CM,Flecker AS

    更新日期:2016-11-01 00:00:00

  • Microbial composition alters the response of litter decomposition to environmental change.

    abstract::Kecent studies cemonstrate that microorganisms are sensitive to environmental change, and that their community composition influences ecosystem functioning. However, it is unknown whether microbial composition interacts with the environment to affect the response of ecosystem processes to changing abiotic conditions. ...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/14-0357.1

    authors: Matulich KL,Martiny JB

    更新日期:2015-01-01 00:00:00

  • Vertebrate herbivory impacts seedling recruitment more than niche partitioning or density-dependent mortality.

    abstract::In tropical forests, resource-based niches and density-dependent mortality are mutually compatible mechanisms that can act simultaneously to limit seedling populations. Differences in the strengths of these mechanisms will determine their roles in maintaining species coexistence. In the first assessment of these mecha...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/11-0894.1

    authors: Clark CJ,Poulsen JR,Levey DJ

    更新日期:2012-03-01 00:00:00

  • Causal mechanisms of soil organic matter decomposition: deconstructing salinity and flooding impacts in coastal wetlands.

    abstract::Coastal wetlands significantly contribute to global carbon storage potential. Sea-level rise and other climate-change-induced disturbances threaten coastal wetland sustainability and carbon storage capacity. It is critical that we understand the mechanisms controlling wetland carbon loss so that we can predict and man...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.1890

    authors: Stagg CL,Schoolmaster DR,Krauss KW,Cormier N,Conner WH

    更新日期:2017-08-01 00:00:00

  • Host-plant-induced larval decision-making in a habitat/host-plant generalist butterfly.

    abstract::Phenotypic plasticity can be a passive response to fluctuating environmental conditions or an active and presumably adaptive (evolved) response selected for in different environments. Here we ask if the larval decision to enter diapause when reared on a host plant associated with a colder habitat is an active or a pas...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/09-0328.1

    authors: Friberg M,Wiklund C

    更新日期:2010-01-01 00:00:00

  • Variability in the expansion of trees and shrubs in boreal Alaska.

    abstract::The expansion of shrubs and trees across high-latitude ecosystems is one of the most dramatic ecological manifestations of climate change. Most of the work quantifying these changes has been done in small areas and over relatively recent time scales. These land-cover transitions are highly spatially variable, and we h...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2660

    authors: Brodie JF,Roland CA,Stehn SE,Smirnova E

    更新日期:2019-05-01 00:00:00

  • Niche partitioning among frugivorous fishes in response to fluctuating resources in the Amazonian floodplain forest.

    abstract::In response to temporal changes in the quality and availability of food resources, consumers should adjust their foraging behavior in a manner that maximizes energy and nutrient intake and, when resources are limiting, minimizes dietary overlap with other consumers. Floodplains of the Amazon and its lowland tributarie...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/13-0393.1

    authors: Correa SB,Winemiller KO

    更新日期:2014-01-01 00:00:00

  • Influence of fish on habitat choice of water birds: a whole system experiment.

    abstract::It is notoriously difficult to study population interactions among highly mobile animals that cannot be meaningfully confined to experimental plots of limited size. For example, migratory water birds are believed to suffer from competition with resident fish populations for shared food resources. While observational e...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/06-1981.1

    authors: Haas K,Köhler U,Diehl S,Köhler P,Dietrich S,Holler S,Jaensch A,Niedermaier M,Vilsmeier J

    更新日期:2007-11-01 00:00:00

  • Indices for detecting differences in species composition: some simplifications of RDA and CCA.

    abstract::We provide algebraic simplifications for the redundancy analysis (RDA) eigenvalue and the canonical correspondence analysis (CCA) eigenvalue in the special case of permanent plots sampled twice. The indices for RDA and CCA are interrelated and are intuitively interpretable. These simplifications also apply to simple s...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/07-0842.1

    authors: Palmer MW,McGlinn DJ,Westerberg L,Milberg P

    更新日期:2008-06-01 00:00:00

  • A multidecade experiment shows that fertilization by salmon carcasses enhanced tree growth in the riparian zone.

    abstract::As they return to spawn and die in their natal streams, anadromous, semelparous fishes such as Pacific salmon import marine-derived nutrients to otherwise nutrient-poor freshwater and riparian ecosystems. Diverse organisms exploit this resource, and previous studies have indicated that riparian tree growth may be enha...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2453

    authors: Quinn TP,Helfield JM,Austin CS,Hovel RA,Bunn AG

    更新日期:2018-11-01 00:00:00

  • Inequality in paleorecords.

    abstract::Paleorecords provide information on past environmental variability, and help define ecological reference conditions by means of changes in their characteristics (accumulation rate, geochemical composition, density, etc.). A measure of temporal dissimilarity, which has traditionally been used in dendrochronology and is...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/07-0783.1

    authors: Biondi F,Qeadan F

    更新日期:2008-04-01 00:00:00

  • Drought sensitivity of an N2 -fixing tree may slow temperate deciduous forest recovery from disturbance.

    abstract::Increased drought intensity and frequency due to climate change may reduce the abundance and activity of nitrogen (N2 )-fixing plants, which supply new N to terrestrial ecosystems. As a result, drought may indirectly reduce ecosystem productivity through its effect on the N cycle. Here, we manipulated growing season n...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1002/ecy.2862

    authors: Minucci JM,Miniat CF,Wurzburger N

    更新日期:2019-12-01 00:00:00

  • Frequent fire alters nitrogen transformations in ponderosa pine stands of the inland northwest.

    abstract::Recurrent, low-severity fire in ponderosa pine (Pinus ponderosa)/interior Douglas-fir (Pseudotsuga menziesii var. glauca) forests is thought to have directly influenced nitrogen (N) cycling and availability. However, no studies to date have investigated the influence of natural fire intervals on soil processes in undi...

    journal_title:Ecology

    pub_type: 杂志文章

    doi:10.1890/0012-9658(2006)87[2511:ffanti]2.0.co;2

    authors: DeLuca TH,Sala A

    更新日期:2006-10-01 00:00:00