Abstract:
:Genomics and bioinformatics have great potential to help address numerous topics in ecology and evolution. Expressed sequence tags (ESTs) can bridge genomics and molecular ecology because they can provide a means of accessing the gene space of almost any organism. We review how ESTs have been used in molecular ecology research in the last several years by providing sequence data for the design of molecular markers, genome-wide studies of gene expression and selection, the identification of candidate genes underlying adaptation, and the basis for studies of gene family and genome evolution. Given the tremendous recent advances in inexpensive sequencing technologies, we predict that molecular ecologists will increasingly be developing and using EST collections in the years to come. With this in mind, we close our review by discussing aspects of EST resource development of particular relevance for molecular ecologists.
journal_name
Mol Ecoljournal_title
Molecular ecologyauthors
Bouck A,Vision Tdoi
10.1111/j.1365-294X.2006.03195.xsubject
Has Abstractpub_date
2007-03-01 00:00:00pages
907-24issue
5eissn
0962-1083issn
1365-294Xpii
MEC3195journal_volume
16pub_type
杂志文章,评审abstract::Improving resistance durability involves to be able to predict the adaptation speed of pathogen populations. Identifying the genetic bases of pathogen adaptation to plant resistances is a useful step to better understand and anticipate this phenomenon. Globodera pallida is a major pest of potato crop for which a resis...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14240
更新日期:2017-09-01 00:00:00
abstract::We analysed genetic variation within and between populations of the common ash from Bulgaria in order to extract biological information useful in the context of conservation management of eastern European genetic resources of noble hardwood species. A total of 321 trees from three regions of Bulgaria were typed at six...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2001.01300.x
更新日期:2001-07-01 00:00:00
abstract::Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the norther...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12902
更新日期:2014-10-01 00:00:00
abstract::To understand the success of invasive species, it is important to know whether colonization events are facilitated by adaptive evolution or are limited to sites where a species is pre-adapted to thrive. Studies of the ancient colonization patterns of an invader in its native range provide an opportunity to examine its...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2007.03508.x
更新日期:2007-10-01 00:00:00
abstract::Bemisia tabaci (Hemiptera: Aleyrodidae) is a haplo-diploid species of sap-feeding insect belonging to the group of insects commonly known as whiteflies. From earlier analyses of mitochondrial and ribosomal markers it has been concluded that in the Asia-Pacific region there were three major indigenous races as well as ...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2005.02700.x
更新日期:2005-10-01 00:00:00
abstract::Mitochondrial DNA sequence data were obtained for eight species of flightless Galapaganus endemic weevils and one winged close relative in order to study their colonization history and modes of diversification in the Galápagos Archipelago. Contrary to most other insular radiations, the phylogeny estimates we recovered...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2007.03642.x
更新日期:2008-02-01 00:00:00
abstract::The spatial genetic structure of the neotropical, clustered tree species Vouacapoua americana (Aublet) was studied in two natural forest stands (Paracou and Nouragues) in French Guiana. Using eight microsatellite loci, V. americana is characterized by a marked genetic structure at small spatial distances (under 30-60 ...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2002.01475.x
更新日期:2002-04-01 00:00:00
abstract::The desert locust (Schistocerca gregaria) undergoes crowding-induced phase transformation from solitary form to gregarious form. The transformations involves changes in behaviour, colour, development, morphometry, fecundity and endocrine physiology. Recession populations of the desert locust exist primarily in the sol...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2001.01212.x
更新日期:2001-03-01 00:00:00
abstract::I derive the equilibrium values of sex-specific FST parameters, in an island model for a dioecious species with sex-biased dispersal and binomial distribution of family size before dispersal (as assumed in a Wright-Fisher population). I show that FST may take different values among males and among females whenever dis...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.0962-1083.2001.01414.x
更新日期:2002-01-01 00:00:00
abstract::Detailed evaluations of genomic variation between sister species often reveal distinct chromosomal regions of high relative differentiation (i.e., "islands of differentiation" in FST ), but there is much debate regarding the causes of this pattern. We briefly review the prominent models of genomic islands of different...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.14858
更新日期:2018-12-01 00:00:00
abstract::Plasmid pSI30 was constructed to increase the sensitivity of detection of a genetically engineered micro-organism (GEM) and its recombinant DNA in environmental samples. This broad host-range, mobilizable plasmid contained chlorocatechol (clc) degradative genes, antibiotic resistance genes (ampicillin and kanamycin) a...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294x.1992.tb00169.x
更新日期:1992-10-01 00:00:00
abstract::We used a comparative phylogeographical approach to investigate the origins of the disjunct wet forest biota of the Golfo Dulce region along the Pacific slope of Costa Rica. This region is isolated by Pacific dry forests north and south and isolated from Caribbean wet forests by mountains. We studied three sympatric l...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2007.03524.x
更新日期:2007-11-01 00:00:00
abstract::Both historical and contemporary processes influence the genetic structure of species, but the relative roles of such processes are still difficult to access. Population genetic studies of species with recent evolutionary histories such as the New Zealand endemic scallop Pecten novaezelandiae (<1 Ma) permit testing of...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.13404
更新日期:2015-11-01 00:00:00
abstract::Phenotypic plasticity has been hypothesized to play a central role in the evolution of phenotypic diversity across species (West-Eberhard ). Through 'genetic assimilation', phenotypes that are initially environmentally induced within species become genetically fixed over evolutionary time. While genetic assimilation h...
journal_title:Molecular ecology
pub_type: 评论,新闻
doi:10.1111/mec.13926
更新日期:2016-12-01 00:00:00
abstract::In a broad survey of Drosophila melanogaster population samples, levels of abdominal pigmentation were found to be highly variable and geographically differentiated. A strong positive correlation was found between dark pigmentation and high altitude, suggesting adaptation to specific environments. DNA sequence polymor...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2007.03324.x
更新日期:2007-07-01 00:00:00
abstract::Phylogeography of Rice yellow mottle virus (RYMV) was reconstructed from the coat protein gene sequences of a selection of 173 isolates from the 14 countries of mainland Africa where the disease occurred and from the full sequences of 16 representative isolates. Genetic variation was linked to geographical distributio...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2005.02578.x
更新日期:2005-06-01 00:00:00
abstract::Contemporary adaptation of plant feeding insects to introduced hosts provides clear cases of ecologically based population divergence. In most cases the mechanisms permitting rapid differentiation are not well known. Here we study morphological and genetic variation associated with recent shifts by the Australian soap...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.12553
更新日期:2013-12-01 00:00:00
abstract::Populations of obligately estuarine taxa are potentially small and isolated and may lack genetic variation and display regional differentiation as a result of drift and inbreeding. Hybridization with a wide-ranging marine congener should introduce genetic variation and reduce the effects of inbreeding depression and g...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2009.04501.x
更新日期:2010-02-01 00:00:00
abstract::Recently evolved species typically share genetic variation across their genomes due to incomplete lineage sorting and/or ongoing gene flow. Given only subtle allele frequency differences at most loci and the expectation that divergent selection may affect only a tiny fraction of the genome, distinguishing closely rela...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.15091
更新日期:2019-05-01 00:00:00
abstract::Avian wing length is an important trait that covaries with the ecology and migratory behaviour of a species and tends to change rapidly when the conditions are altered. Long-distance migrants typically have longer wings than short-distance migrants and sedentary species, and long-winged species also tend to be more di...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2011.05365.x
更新日期:2012-01-01 00:00:00
abstract::Fish have evolved a variety of sex-determining (SD) systems including male heterogamy (XY), female heterogamy (ZW) and environmental SD. Little is known about SD mechanisms of Sebastes rockfishes, a highly speciose genus of importance to evolutionary and conservation biology. Here, we characterize the sex determinatio...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.13594
更新日期:2016-05-01 00:00:00
abstract::Hawksbill turtles (Eretmochelys imbricata) migrate between nesting beaches and feeding habitats that are often associated with tropical reefs, but it is uncertain which nesting colonies supply which feeding habitats. To address this gap in hawksbill biology, we compile previously published and new mitochondrial DNA (m...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2006.03096.x
更新日期:2007-01-01 00:00:00
abstract::Amplified fragment length polymorphisms (AFLPs) were used to characterize the genetic diversity within and among natural populations of Sticherus flabellatus. Eight populations within the Sydney region of New South Wales, Australia were surveyed using 11 primer combinations. A total of 1108 reproducible bands were det...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2000.00901.x
更新日期:2000-05-01 00:00:00
abstract::Genomic diversity is the evolutionary foundation for adaptation to environmental change and thus is essential to consider in conservation planning. Island species are ideal for investigating the evolutionary drivers of genomic diversity, in part because of the potential for biological replicates. Here, we use genome d...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.15266
更新日期:2019-11-01 00:00:00
abstract::A simple method is presented for developing polymorphic, anonymous DNA markers suitable for population genetic studies. Anonymous DNA fragments are screened for sequence variability using a common mutation detection technique (single strand conformation polymorphism analysis; SSCP) and locus-specific PCR primers are d...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.1997.00192.x
更新日期:1997-04-01 00:00:00
abstract::The genetic structure of Apis mellifera populations from the Canary Islands has been assessed by mitochondrial (restriction fragment length polymorphisms of the intergenic transfer RNAleu-COII region) and nuclear (microsatellites) studies. These populations show a low level of genetic variation in terms of average num...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1046/j.1365-294x.2001.01303.x
更新日期:2001-07-01 00:00:00
abstract::Classification, phylogeography and the testing of evolutionary hypotheses rely on correct estimation of species phylogeny. Early molecular phylogenies often relied on mtDNA alone, which acts as a single linkage group with one history. Over the last decade, the use of multiple nuclear sequences has often revealed confl...
journal_title:Molecular ecology
pub_type: 杂志文章,评审
doi:10.1111/mec.14096
更新日期:2017-06-01 00:00:00
abstract::Reef corals are especially sensitive to environmental change since their survival is dependent on a delicate balance between the coral host and its algal endosymbiont. Predicting the responses of reef ecosystems to global climate change requires a detailed understanding of the diversity of both partners in this symbio...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/j.1365-294X.2007.03254.x
更新日期:2007-03-01 00:00:00
abstract::Diversifying selection on metabolic pathways can reduce intraspecific gene flow and promote population divergence. An opportunity to explore this arises from mitonuclear discordance observed in an Australian bird Eopsaltria australis. Across >1500 km, nuclear differentiation is low and latitudinally structured by isol...
journal_title:Molecular ecology
pub_type: 杂志文章
doi:10.1111/mec.13203
更新日期:2015-06-01 00:00:00
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journal_title:Molecular ecology
pub_type: 杂志文章,meta分析
doi:10.1111/mec.14920
更新日期:2019-01-01 00:00:00