Abstract:
:The one-for-one exchange of Cl(-) and HCO(3)(-) ions is catalyzed by human erythrocyte anion exchanger 1 (hAE1) through a ping-pong mechanism whereby the protein exists in two main conformations, with the single anion-binding site exposed at either the cytoplasmic (inner) side (E(i)) or the extracellular side (E(o)), with interconversion between the two states being possible only after anion binding. Steady-state and time-resolved resonance energy transfer (FRET) techniques were used to determine the distance of the binding site for diTBA (bis-(1,3-diethylthiobarbituric acid)trimethine oxonol), a high affinity fluorescent oxonol inhibitor of hAE1, from a benchmark site (probably Lys-430) labeled by external fluorescein maleimide (FM). Using red cell ghost membranes, energy transfer distances were measured in media containing different anions between FM as the donor, covalently attached to one monomer, and diTBA as the acceptor, reversibly bound to the adjacent monomer of a hAE1 dimer. Energy transfer increased significantly in chloride or bicarbonate buffers relative to conditions where no transportable anions were present, that is, in citrate buffer. These differences in transfer efficiencies were interpreted in light of the conformational distributions of hAE1 in various buffers and the possible effects of diTBA itself on the distribution. The analysis indicates that the diTBA binding site comes closer to the FM site by approximately 7 A in chloride buffer as compared to that in citrate (or equivalent changes in diTBA orientation occur) because of the effects of anion binding. This provides the first direct physical evidence for structural changes in hAE1 induced by substrates.
journal_name
Biochemistryjournal_title
Biochemistryauthors
Pal P,Lebedev D,Salim S,Knauf PAdoi
10.1021/bi051916rsubject
Has Abstractpub_date
2006-05-23 00:00:00pages
6279-95issue
20eissn
0006-2960issn
1520-4995journal_volume
45pub_type
杂志文章相关文献
BIOCHEMISTRY文献大全abstract::Bacterioferritins are members of a class of spherical shell-like iron storage proteins that catalyze the oxidation and hydrolysis of iron at specific sites inside the protein shell, resulting in formation of a mineral core of hydrated ferric oxide within the protein cavity. Electrode oximetry/pH stat was used to study...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi992631f
更新日期:2000-04-25 00:00:00
abstract::Since a major function of RNA polymerase must be to bring together substrates in the optimal configuration for internucleotide bond formation, studies have been undertaken to understand the geometrical relationship of the two substrates. A model has been constructed for the geometry of interaction of two ATP molecules...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00477a017
更新日期:1990-06-26 00:00:00
abstract::Restrictocin is a small basic protein produced by the fungus Aspergillus restrictus. It potently inhibits protein synthesis in eukaryotic cells by specifically cleaving a single phosphodiester bond in 28S rRNA. A histidine residue at position 49 in restrictocin has been implicated in its active site. A mutant of restr...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi971177h
更新日期:1997-11-04 00:00:00
abstract::The rapid expansion of the amount of genomic and structural data has provided many examples of enzymes with evolutionarily related active sites that catalyze different reactions. Functional comparisons of these active sites can provide insight into the origins of the enormous catalytic proficiency of enzymes and the e...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi060847t
更新日期:2006-08-15 00:00:00
abstract::Antifreeze proteins (AFPs) inhibit the growth of ice by binding to the surface of ice crystals, preventing the addition of water molecules to cause a local depression of the freezing point. AFPs from insects are much more effective at depressing the freezing point than fish AFPs. Here, we have investigated the possibi...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi035605x
更新日期:2004-01-13 00:00:00
abstract::The binding of rabbit globin mRNA to the 25-kDa cap binding protein eIF-4E from human erythrocytes was found to be 5.3-fold stronger than the binding of the cap analogue m7GpppG to eIF-4E [Gross et al. (1990) Biochemistry 29, 5008-5012]. In order to investigate whether this effect is due to the longer sequence of nucl...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00120a020
更新日期:1992-02-11 00:00:00
abstract::Most duplex DNAs that are in the "B" conformation are not immunogenic. One important exception is poly(dG) X poly(dC), which produces a good immune response even though, by many criteria, it adopts a conventional right-handed helix. In order to investigate what features are being recognized, monoclonal antibodies were...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00309a024
更新日期:1984-07-03 00:00:00
abstract::The relative activities of 313 mutants of the gene V protein of bacteriophage f1, assayed in vivo, have been used to evaluate two approaches to predicting the effects of single amino acid substitutions on the function of a protein. First, we tested methods that only depend on the properties of the wild-type and substi...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00239a022
更新日期:1991-06-25 00:00:00
abstract::Staphylococcal nuclease H124L is a recombinant protein produced in Escherichia coli whose sequence is identical with that of the nuclease produced by the V8 variant of Staphylococcus aureus. The enzyme-metal ion activator-nucleotide inhibitor ternary complex, nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+, was inves...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00453a011
更新日期:1990-01-09 00:00:00
abstract::Azotobacter vinelandii bacterioferritin (AvBF) containing 800-1500 Co or Mn atoms as Co(III) and Mn(III) oxyhydroxide cores (Co-AvBF, Mn-AvBF) was synthesized by the same procedure used previously for horse spleen ferritin (HoSF). The kinetics of reduction of Co-AvBF and Mn-AvBF by ascorbic acid are first-order in eac...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi060164d
更新日期:2006-05-09 00:00:00
abstract::Phosphodeoxyribomutase from Escherichia coli has been purified to homogeneity. Chromatography on DEAE-Sephadex revealed three peaks of enzyme activity, designated form I, form II, and form III. Form III could be further separated into form III-1 and form III-2 by polyacrylamide gel electrophoresis. The four different ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00674a021
更新日期:1975-02-11 00:00:00
abstract::The nature of the active site cofactor and the amino acid sequence flanking this structure have been determined in a range of copper amine oxidases. For enzymes from porcine plasma, porcine kidney, and pea seedlings, proteolytic digestion was performed on phenylhydrazone or p-nitrophenylhydrazone derivatives. Thermoly...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00163a025
更新日期:1992-12-08 00:00:00
abstract::Light-induced GTP-dependent scattering changes are studied in suspensions of retinal disc membranes to which one or both of the purified proteins involved in the phototransduction mechanism (G-protein and cGMP phosphodiesterase) are reassociated; a scattering change which depends on the presence of both G-protein (G) ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00121a039
更新日期:1992-02-18 00:00:00
abstract::15N-labeled hen lysozyme has been studied by 2D and 3D NMR in order to characterize its dynamic behavior. The resonances of all main-chain amide nitrogen atoms were assigned, as were resonances of nitrogen atoms in 28 side chains. Relaxation measurements for the main-chain and arginine and tryptophan side-chain 15N nu...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00012a023
更新日期:1995-03-28 00:00:00
abstract::The activity of phospholipase A2 from snake venom to hydrolyze bilayers of phosphatidylcholines is greatly enhanced by the presence of the hydrolysis products, lysolecithin and fatty acid, in the bilayer. The fluorescence of several probes of membrane structure was used to monitor changes in bilayer physical propertie...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00024a003
更新日期:1995-06-20 00:00:00
abstract::Beta2microglobulin (beta2m) is the major protein component of the fibrillar amyloid deposits isolated from patients diagnosed with dialysis-related amyloidosis (DRA). While investigating the molecular mechanism of amyloid fibril formation by beta2m, we found that the beta2m C-terminal peptide of 28 residues (cbeta2m) ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0301486
更新日期:2003-11-25 00:00:00
abstract::Phosphofructokinase from Escherichia coli (EcPFK) is a homotetramer with four active sites and four allosteric sites. Understanding the allosteric activation of EcPFK by MgADP has been complicated by the complex web of possible interactions, including active site homotropic interactions, allosteric site homotropic int...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi048569q
更新日期:2004-11-09 00:00:00
abstract::The 1H resonances of the high-potential [4Fe-4S]2+ ferredoxin from Chromatium vinosum have been assigned through conventional sequential methodology applied to 2D NMR spectra. Almost 80% of the residues were identified using standard 2D COSY, HOHAHA, and NOESY pulse sequences. These residues correspond to four segment...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00139a029
更新日期:1992-06-23 00:00:00
abstract::To shed more light on the molecular requirements for recognition of thyroid response elements (TREs) by thyroid receptors (TRs), we compared the specific aspects of DNA TRE recognition by different TR constructs. Using fluorescence anisotropy, we performed a detailed and hierarchical study of TR-TRE binding. This was ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi901282s
更新日期:2010-02-09 00:00:00
abstract::Prion diseases are associated with a conformational switch in the prion protein (PrP) from its normal cellular form (denoted PrP(C)) to a disease-associated "scrapie" form (PrP(Sc)). A number of PrP(Sc)-like conformations can be generated by incubating recombinant PrP(C) at low pH, indicating that protonation of key r...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi100572j
更新日期:2010-10-12 00:00:00
abstract::Thyroxine and analogues inhibit rat liver aminoacyl-tRNA synthetase activity for phenylalanine and tyrosine. A high yield purification of the major cytoplasmic form of phenylalanyl-tRNA synthetase (C1) and its characterization is reported. Polyribosome-bound and other sedimentable forms are found to be indistinguishab...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00647a017
更新日期:1976-01-27 00:00:00
abstract::Serine hydroxymethyltransferase (SHMT) catalyzes the reversible cleavage of serine to form glycine and single carbon groups that are essential for many biosynthetic pathways. SHMT requires both pyridoxal phosphate (PLP) and tetrahydropteroylpolyglutamate (H4PteGlun) as cofactors, the latter as a carrier of the single ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9904151
更新日期:1999-06-29 00:00:00
abstract::In an attempt to understand the multifunctional involvement of beta(2)-glycoprotein I (beta(2)GPI) in autoimmune diseases, thrombosis, atherosclerosis, and inflammatory processes, substantial interest is focused on the interaction of beta(2)GPI with negatively charged ligands, in particular, with acidic phospholipids....
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi0114372
更新日期:2001-11-27 00:00:00
abstract::The molecular mechanism of hemoglobin cooperativity was studied kinetically by flash photolysis on mixed-state hemoglobins which consist of three ferrous carboxy subunits and one hybrid ferric subunit including fluoromet, azidomet, cyanatomet, and thiocyanatomet. The effects of conformational transitions on the hybrid...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00593a012
更新日期:1979-12-25 00:00:00
abstract::Bacteriocins are bacterial peptides with specific activity against competing species. They hold great potential as natural preservatives and for their probiotic effects. We show here nuclear magnetic resonance-based evidence that glycocin F, a 43-amino acid bacteriocin from Lactobacillus plantarum, contains two β-link...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi200217u
更新日期:2011-04-12 00:00:00
abstract::Sucrose density gradient shift assays were used to study the interactions of human glucocorticoid receptors (GR) with small DNA fragments either containing or lacking glucocorticoid response element (GRE) DNA consensus sequences. When crude cytoplasmic extracts containing [3H]triamcinolone acetonide [( 3H]TA) labeled ...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00431a003
更新日期:1989-03-07 00:00:00
abstract::The cro repressor protein from bacteriophage lambda has been studied in solution by two-dimensional nuclear magnetic resonance spectroscopy (2D NMR). Following the approach of Wüthrich and co-workers [Wüthrich, K., Wider, G., Wagner, G., & Braun, W. (1982) J. Mol. Biol. 155, 311-319], individual spin systems were iden...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi00338a011
更新日期:1985-08-13 00:00:00
abstract::In the following, molecular simulations are used to reveal unexpected behavior within bacterial membranes. We show that lipopolysaccharide molecules found in these membranes form viscous amorphous solids when they are interlinked with monovalent and divalent cations. The bilayers exhibit both liquid and glassy charact...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/acs.biochem.6b01063
更新日期:2017-03-21 00:00:00
abstract::Transient phosphorylation at an aspartate residue on the Spo0F protein is a central step in the phosphorelay signal transduction pathway controlling sporulation in Bacilli. The response regulator Spo0F-P is stable to hydrolysis (t1/2 > 24 h at 23 degrees C in the absence of Mg2+), allowing the use of nondenaturing PAG...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi9519361
更新日期:1996-03-05 00:00:00
abstract::Cyanobacteriochromes (CBCRs) are photosensory proteins related to the red/far-red phytochromes. Like phytochromes, CBCRs use linear tetrapyrrole (bilin) chromophores covalently attached via a thioether linkage to a conserved Cys residue also found in plant and cyanobacterial phytochromes. Unlike almost all phytochrome...
journal_title:Biochemistry
pub_type: 杂志文章
doi:10.1021/bi300171s
更新日期:2012-05-01 00:00:00