Visualization of protein fold space via nonmetric multidimensional scaling.

Abstract:

:In this paper, a 3D map of protein fold space was produced using Dali structure alignment and nonmetric multidimensional scaling. The fold space comprises four radial clusters, which correspond to the four classes of SCOP. The overall structure of the protein fold space is largely determined by three factors: secondary structure composition, topology of beta sheet, and domain size.

journal_name

Protein Pept Lett

authors

Xu Q

doi

10.2174/0929866054395257

subject

Has Abstract

pub_date

2005-07-01 00:00:00

pages

473-5

issue

5

eissn

0929-8665

issn

1875-5305

journal_volume

12

pub_type

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