Single-molecule analysis of epidermal growth factor signaling that leads to ultrasensitive calcium response.

abstract：:Voltage-gated sodium channels undergo transitions between open, closed, and inactivated states, enabling regulation of the translocation of sodium ions across membranes. A recently published crystal structure of the full-length prokaryotic NavMs crystal structure in the activated open conformation has revealed the pre...

journal_title：Biophysical journal

authors： Ke S,Ulmschneider MB,Wallace BA,Ulmschneider JP

更新日期：2018-11-20 00:00:00

abstract：:We introduce an intrinsically multiplexed and easy to implement method to apply an external force to a biomolecule and thus probe its interaction with a second biomolecule or, more generally, its environment (for example, the cell membrane). We take advantage of the hydrodynamic interaction with a controlled fluid flo...

journal_title：Biophysical journal

authors： Türkcan S,Richly MU,Bouzigues CI,Allain JM,Alexandrou A

更新日期：2013-07-02 00:00:00

abstract：:In dialyzed Myxicola axons substitution of heavy water (D2O) externally and internally slows both sodium and potassium kinetics and decreases the maximum conductances. Furthermore, this effect is strongly temperature dependent, the magnitude of the slowing produced by D2O substitution decreasing with increasing temper...

journal_title：Biophysical journal

authors： Schauf CL,Bullock JO

更新日期：1979-08-01 00:00:00

abstract：:Sickle hemoglobin forms long, multistranded polymers that account for the pathophysiology of the disease. The molecules in these polymers make significant contacts along the polymer axis (i.e., axial contacts) as well as making diagonally directed contacts (i.e., lateral contacts). The axial contacts do not engage the...

journal_title：Biophysical journal

authors： Wang Y,Ferrone FA

更新日期：2013-11-05 00:00:00

abstract：:A Green's function approach is used in constructing a dynamic model of a semi-infinite length of the DNA homopolymer B poly(d) . poly(d). Considerable attention is focused on the hydrogen bond stretching close to the terminus. A melting (or breathing) coordinate (M) is defined as an average over the three linking hydr...

journal_title：Biophysical journal

authors： Putnam BF,Van Zandt LL,Prohofsky EW,Mei WN

更新日期：1981-08-01 00:00:00

abstract：:Isolated sarcoplasmic reticulum (SR) vesicles with polymerized calcium pump protein were freeze-dried and rotary shadowed following uranyl acetate stabilization. This technique allows direct observation of a single side of the vesicle without requiring optical filtering. The heads of individual ATPase molecules, proje...

journal_title：Biophysical journal

authors： Ferguson DG,Franzini-Armstrong C,Castellani L,Hardwicke PM,Kenney LJ

更新日期：1985-10-01 00:00:00

abstract：:A novel system for measuring, simultaneously, ciliary beating and intracellular free calcium is presented. The advantages and dynamic nature of the system are demonstrated by measuring the effects of the calcium ionophore lonomycin and of extracellular ATP on ciliated rabbit trachea. The results are discussed with reg...

journal_title：Biophysical journal

authors： Korngreen A,Priel Z

更新日期：1994-07-01 00:00:00

abstract：:Combining an azobenzene chromophore with the bis-cysteinyl active-site sequence of the protein disulfide isomerase (PDI) we constructed a simple but promising model for allosteric conformational rearrangements. Paralleling cellular signaling events, an external trigger, here absorption of a photon, leads to a structur...

journal_title：Biophysical journal

authors： Löweneck M,Milbradt AG,Root C,Satzger H,Zinth W,Moroder L,Renner C

更新日期：2006-03-15 00:00:00

abstract：:N-BAR domains are protein modules that bind to and induce curvature in membranes via a charged concave surface and N-terminal amphipathic helices. Recently, molecular dynamics simulations have demonstrated that the N-BAR domain can induce a strong local curvature that matches the curvature of the BAR domain surface fa...

journal_title：Biophysical journal

authors： Blood PD,Swenson RD,Voth GA

更新日期：2008-08-01 00:00:00

abstract：:It was shown previously that a significant fraction of the myosin crossbridges is attached to actin in the skinned rabbit psoas fibers under relaxed conditions at low ionic strength and low temperature (Brenner, B., M. Schoenberg, J. M. Chalovich, L. E. Greene, and E. Eisenberg. 1982. Proc. Natl. Acad. Sci. USA. 79:72...

journal_title：Biophysical journal

authors： Yu LC,Brenner B

更新日期：1989-03-01 00:00:00

abstract：:The effects of lipid chain packing and permeant size and shape on permeability across lipid bilayers have been investigated in gel and liquid crystalline dipalmitoylphosphatidylcholine (DPPC) bilayers by a combined NMR line-broadening/dynamic light scattering method using seven short-chain monocarboxylic acids (formic...

journal_title：Biophysical journal

authors： Xiang TX,Anderson BD

更新日期：1998-12-01 00:00:00

abstract：:The aquaglyceroporin GlpF is a transmembrane channel of Escherichia coli that facilitates the uptake of glycerol by the cell. Its high glycerol uptake rate is crucial for the cell to survive in very low glycerol concentrations. Although GlpF allows both influx and outflux of glycerol, its structure, similar to the str...

journal_title：Biophysical journal

authors： Lu D,Grayson P,Schulten K

更新日期：2003-11-01 00:00:00

abstract：:The dependences of the steady-state critical concentration and average filament length of actin solutions, on the filament branching and capping rates, are calculated using a rate methodology based on the total number of actin filaments. The methodology generalizes calculations of the "treadmilling" actin concentratio...

journal_title：Biophysical journal

authors： Carlsson AE

更新日期：2005-07-01 00:00:00

abstract：:A requirement for concentrated and chemically homogeneous pools of molecular building blocks would severely restrict plausible scenarios for the origin of life. In the case of membrane self-assembly, models of prebiotic lipid synthesis yield primarily short, single-chain amphiphiles that can form bilayer vesicles only...

journal_title：Biophysical journal

authors： Budin I,Prwyes N,Zhang N,Szostak JW

更新日期：2014-10-07 00:00:00

abstract：:Polymeric microcapsules with a light-absorbing dye incorporated in their shell can generate vapor microbubbles that can be spatiotemporally controlled by pulsed laser irradiation. These contrast agents of 6-8 μm in diameter can circulate through the vasculature, offering possibilities for ultrasound (molecular) imagin...

journal_title：Biophysical journal

authors： Lajoinie G,van Rooij T,Skachkov I,Blazejewski E,Veldhuis G,de Jong N,Kooiman K,Versluis M

更新日期：2017-05-09 00:00:00

abstract：:The solutions to a general class of axon partial differential equations proposed by FitzHugh which includes the Hodgkin-Huxley equations are studied. It is shown that solutions to the partial differential equations are exactly the solutions to a related set of integral equations. An iterative procedure for constructin...

journal_title：Biophysical journal

authors： Evans J,Shenk N

更新日期：1970-11-01 00:00:00

abstract：:Purified cytochrome c oxidase CO complex from beef heart has been studied by Fourier transform infrared absorbance difference spectroscopy. Photolysis at 10-20 Kelvin results in dissociation of a3FeCO, formation of CuBCO, and perturbation of the a3-heme and CuB complex. The vibrational perturbation spectrum between 90...

journal_title：Biophysical journal

authors： Park S,Pan LP,Chan SI,Alben JO

更新日期：1996-08-01 00:00:00

abstract：:Giant bilayer vesicles were reconstituted from several lipids and lipid/cholesterol (CHOL) mixtures: stearolyloleoylphosphatidylcholine (SOPC), bovine sphingomyelin (BSM), diarachidonylphosphatidylcholine (DAPC), SOPC/CHOL, BSM/CHOL, DAPC/CHOL, and extracted red blood cell (RBC) lipids with native cholesterol. Single-...

journal_title：Biophysical journal

authors： Needham D,Nunn RS

更新日期：1990-10-01 00:00:00

abstract：:We study DNA supercoiling in a quantitative fashion by micromanipulating single linear DNA molecules with a magnetic field gradient. By anchoring one end of the DNA to multiple sites on a magnetic bead and the other end to multiple sites on a glass surface, we were able to exert torsional control on the DNA. A rotatin...

journal_title：Biophysical journal

authors： Strick TR,Allemand JF,Bensimon D,Croquette V

更新日期：1998-04-01 00:00:00

abstract：:A two-dimensional stochastic model for the dynamics of microtubules in gliding-assay experiments is presented here, which includes the viscous drag acting on the moving fiber and the interaction with the kinesins. For this purpose, we model kinesin as a spring, and explicitly use parameter values to characterize the m...

journal_title：Biophysical journal

authors： Gibbons F,Chauwin JF,Despósito M,José JV

更新日期：2001-06-01 00:00:00

abstract：:Resolving the dynamical interplay of proteins and lipids in the live-cell plasma membrane represents a central goal in current cell biology. Superresolution concepts have introduced a means of capturing spatial heterogeneity at a nanoscopic length scale. Similar concepts for detecting dynamical transitions (superresol...

journal_title：Biophysical journal

authors： Ruprecht V,Wieser S,Marguet D,Schütz GJ

更新日期：2011-06-08 00:00:00

abstract：:We present a qualitative computer graphics approach to the characterization of forces important to the assembly of beta domains that should have general utility for examining protein interactions and assembly. In our approach, the nature of the molecular surface buried by the domain contacts, the specificity of the re...

journal_title：Biophysical journal

authors： Getzoff ED,Tainer JA,Olson AJ

更新日期：1986-01-01 00:00:00

abstract：:A number of membrane proteins act via binding at the water/lipid bilayer interface. An important example of such proteins is provided by the gating-modifier toxins that act on voltage-gated potassium (Kv) channels. They are thought to partition to the headgroup region of lipid bilayers, and so provide a good system fo...

journal_title：Biophysical journal

authors： Wee CL,Gavaghan D,Sansom MS

更新日期：2008-10-01 00:00:00

abstract：:Cholesterol is a key component of eukaryotic membranes, but its role in cellular biology in general and in lipid rafts in particular remains controversial. Model membranes are used extensively to determine the phase behavior of ternary mixtures of cholesterol, a saturated lipid, and an unsaturated lipid with liquid-or...

journal_title：Biophysical journal

authors： Bennett WFD,Shea JE,Tieleman DP

更新日期：2018-06-05 00:00:00

abstract：:Polypeptide toxins isolated from the venom of cone snails, known as μ-conotoxins, block voltage-gated sodium channels by physically occluding the ion-conducting pathway. Using molecular dynamics, we show that one subtype of μ-conotoxins, PIIIA, effectively blocks the bacterial voltage-gated sodium channel Na(V)Ab, who...

journal_title：Biophysical journal

authors： Chen R,Chung SH

更新日期：2012-02-08 00:00:00

abstract：:Artificial lipidic bilayers are widely used as a model for the lipid matrix in biological cell membranes. We use the Pockels electro-optical effect to investigate the properties of an artificial lipidic membrane doped with nonlinear molecules in the outer layer. We report here what is believed to be the first electro-...

journal_title：Biophysical journal

authors： Hajj B,De Reguardati S,Hugonin L,Le Pioufle B,Osaki T,Suzuki H,Takeuchi S,Mojzisova H,Chauvat D,Zyss J

更新日期：2009-12-02 00:00:00

abstract：:Nonphotochemical quenching is the protective mechanism against overexcitation of photosystem II, triggered by excess ΔpH in photosynthetic membranes. The light-harvesting complexes (LHCs), the de-epoxidation of violaxanthin to zeaxanthin, and the photosystem II subunit S (PsbS) work in synergy for an optimized multile...

journal_title：Biophysical journal

authors： Daskalakis V,Papadatos S

更新日期：2017-12-05 00:00:00

abstract：:We present direct quasielastic neutron scattering measurements, in vivo, of macromolecular dynamics in Escherichia coli. The experiments were performed on a wide range of timescales to cover the large panel of internal and self-diffusion motions. Three major internal processes were extracted at physiological temperatu...

journal_title：Biophysical journal

authors： Jasnin M,Moulin M,Haertlein M,Zaccai G,Tehei M

更新日期：2008-07-01 00:00:00

abstract：:We have attempted to link the solution actomyosin ATPase with the mechanical properties of in vitro actin filament sliding over heavy meromyosin. To accomplish this we perturbed the system by altering the substrate with various NTPs and divalent cations, and by altering ionic strength. A wide variety of enzymatic and ...

journal_title：Biophysical journal

authors： Amitani I,Sakamoto T,Ando T

更新日期：2001-01-01 00:00:00

abstract：:To investigate diffusion processes in agarose gel, nanoparticles with sizes in the range between 1 and 140 nm have been tested by means of fluorescence correlation spectroscopy. Understanding the diffusion properties in agarose gels is interesting, because such gels are good models for microbial biofilms and cells cyt...

journal_title：Biophysical journal

authors： Fatin-Rouge N,Starchev K,Buffle J

更新日期：2004-05-01 00:00:00