A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level.

Abstract:

:Abstract Microsatellites are powerful molecular markers, used commonly to estimate intraspecific genetic distances. With the exception of band sharing similarity index, available distance measures were developed specifically for diploid organisms and are unsuited for comparisons of polyploids. Here, we present a simple method for calculation of microsatellite genotype distances, which takes into account mutation processes and permits comparison of individuals with different ploidy levels. This method should provide a valuable tool for intraspecific analyses of polyploid organisms, which are widespread among plants and some animal taxa. An illustration is given using data from the planarian flatworm Schmidtea polychroa (Platyhelminthes).

journal_name

Mol Ecol

journal_title

Molecular ecology

authors

Bruvo R,Michiels NK,D'Souza TG,Schulenburg H

doi

10.1111/j.1365-294X.2004.02209.x

subject

Has Abstract

pub_date

2004-07-01 00:00:00

pages

2101-6

issue

7

eissn

0962-1083

issn

1365-294X

pii

MEC2209

journal_volume

13

pub_type

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