A reexamination of the nucleotide incorporation fidelity of DNA polymerases.

Abstract:

:Intensive study has been devoted to understanding the kinetic and structural bases underlying the exceptionally high fidelity (low error frequencies) of the typical DNA polymerase. Commonly proposed explanations have included (i) the concept of fidelity check points, in which the correctness of a nascent base pair match is tested at multiple points along the reaction pathway, and (ii) an induced-fit fidelity enhancement mechanism based on a rate-limiting, substrate-induced conformational change. In this article, we consider the evidence and theoretical framework for the involvement of such mechanisms in fidelity enhancement. We suggest that a "simplified" model, in which fidelity is derived fundamentally from differential substrate binding at the transition state of a rate-limiting chemical step, is consistent with known data and sufficient to explain the substrate selectivity of these enzymes.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Showalter AK,Tsai MD

doi

10.1021/bi026021i

subject

Has Abstract

pub_date

2002-08-27 00:00:00

pages

10571-6

issue

34

eissn

0006-2960

issn

1520-4995

pii

bi026021i

journal_volume

41

pub_type

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