Flow-through polymerase chain reactions in chip thermocyclers.

Abstract:

:The miniaturization of analytical devices by micromachining technology is destined to have a major impact on medical and bioanalytical fields. To meet the current demands for rapid DNA amplification, various instruments and innovative technologies have been introduced by several groups in recent years. The development of the devices was extended in different directions and adapted to corresponding applications. In this review the development of a variety of devices and components for performing DNA amplification as well as the comparison of batch-process thermocyclers with reaction chambers and flow-through devices for different purposes are discussed. The main attention is turned to a flow device concept for thermocycling using microfabricated elements for local heat flow management, for which simulations and considerations for further improvement regarding design, material choice and applied technology were performed. The present review article mainly discusses and compares thermocycling devices for rapid thermocycling made of silicon or of silicon and glass with a short excursion to the possibility of plastic chip devices. In order to perform polymerase chain reactions (PCRs) in the microreactors, special attention must be paid to the conditions of the internal surfaces. For microchips, surface effects are generally pronounced because the surface to volume ratio increases upon miniaturization. Solutions for solving this problem are presented. We propose an overview of layouts for batch-process thermocyclers with different parallelization of reaction chambers and also of different designs of continuous flow thermocycling chips, paying particular attention to the parameters which influence the efficiency of such chip devices. Finally we point out some recent issues for applications in the field of clinical diagnostics.

journal_name

J Biotechnol

journal_title

Journal of biotechnology

authors

Schneegass I,Köhler JM

doi

10.1016/s1389-0352(01)00033-2

subject

Has Abstract

pub_date

2001-12-01 00:00:00

pages

101-21

issue

2

eissn

0168-1656

issn

1873-4863

pii

S1389-0352(01)00033-2

journal_volume

82

pub_type

杂志文章,评审
  • Bioelectrocatalysis: the electrochemical kinetics of hydrogenase action.

    abstract::A hydrogen electrode based on a hydrogenase immobilized on a carbon material has been developed. The equilibrium hydrogen potential was reached in an atmosphere of H2 on the enzyme electrode according to the mechanism of direct exchange of electrons between the electrode and the enzyme active center. The electrochemic...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(93)90095-5

    authors: Varfolomeyev SD,Yaropolov AI,Karyakin AA

    更新日期:1993-02-01 00:00:00

  • Genome-wide analysis of the L-methionine biosynthetic pathway in Corynebacterium glutamicum by targeted gene deletion and homologous complementation.

    abstract::The genome sequence of Corynebacterium glutamicum, a gram-positive soil bacterium widely used as an amino acid producer, was analyzed by a similarity-based approach to elucidate the pathway for the biosynthesis of L-methionine. The functions of candidate ORFs were derived by gene deletion and, if necessary, by homolog...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(03)00158-5

    authors: Rückert C,Pühler A,Kalinowski J

    更新日期:2003-09-04 00:00:00

  • Very high expression of an anti-carcinoembryonic antigen single chain Fv antibody fragment in the yeast Pichia pastoris.

    abstract::In this paper we report the development of a recombinant strain of the yeast Pichia pastoris, which secretes an anti-carcinoembryonic antigen single chain Fv (scFv) antibody fragment to the culture supernatant as a biologically active protein, at levels of 1.2 g l(-1). The yeast scFv was purified by IMAC, with a final...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(99)00183-2

    authors: Freyre FM,Vázquez JE,Ayala M,Canaán-Haden L,Bell H,Rodríguez I,González A,Cintado A,Gavilondo JV

    更新日期:2000-01-21 00:00:00

  • Structures of microbial communities found in anaerobic batch runs that produce methane from propionic acid--Seeded from full-scale anaerobic digesters above a certain threshold.

    abstract::The volatile fatty acid propionate inhibits anaerobic digestion during organic waste treatments. To examine potential microbial interactions that accelerate propionate oxidation, anaerobic digestion systems seeded with various types of anaerobic sludge were analyzed. Seed samples were collected from 10 different full-...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2015.09.040

    authors: Kim W,Shin SG,Han G,Cho K,Hwang S

    更新日期:2015-11-20 00:00:00

  • Mechanisms of ammonia and ammonium ion toxicity in animal cells: transport across cell membranes.

    abstract::A model for transport of ammonia and ammonium ions across cell membranes is presented. The model suggests that ammonium ions compete with potassium ions for inward transport, over the cytoplasmic membrane, via potassium transport proteins like the Na+/K(+)-ATPase and the Na+K+2Cl(-)-cotransporter. It also explains the...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(93)90148-g

    authors: Martinelle K,Häggström L

    更新日期:1993-09-01 00:00:00

  • Establishment of transgenic tobacco hairy roots expressing basic peroxidases and its application for phenol removal.

    abstract::Transgenic hairy root (HR) systems constitute an interesting alternative to improve the efficiency of phytoremediation process. Since peroxidases (Px) have been associated with phenolic compounds removal, in the present work, transgenic tobacco HR, which expressed basic Px genes from tomato (tpx1 and tpx2), were estab...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2008.11.008

    authors: Sosa Alderete LG,Talano MA,Ibáñez SG,Purro S,Agostini E,Milrad SR,Medina MI

    更新日期:2009-02-23 00:00:00

  • High-level expression of human insulin-like growth factor II in Escherichia coli.

    abstract::A gene encoding mature human insulin-like growth factor II (IGF-II) was constructed from the modified IGF-II cDNA sequence and two double-stranded synthetic oligodeoxynucleotide linkers. It was fused to a truncated lacZ gene such that IGF-II was expressed as part of C-terminus of beta-galactosidase. This fused lacZ'-I...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/0168-1656(90)90077-o

    authors: Rhee HJ,Lee YI,Yang KH

    更新日期:1990-03-01 00:00:00

  • Recent developments in the structural organization and regulation of nitrogen fixation genes in Herbaspirillum seropedicae.

    abstract::Herbaspirillum seropedicae is a nitrogen-fixing bacterium found in association with economically important gramineae. Regulation of nitrogen fixation involves the transcriptional activator NifA protein. The regulation of NifA protein and its truncated mutant proteins is described and compared with that of other nitrog...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/s0168-1656(01)00343-1

    authors: Pedrosa FO,Benelli EM,Yates MG,Wassem R,Monteiro RA,Klassen G,Steffens MB,Souza EM,Chubatsu LS,Rigo LU

    更新日期:2001-10-04 00:00:00

  • Assessing gene expression variation in normal human tissues using GeneTag, a novel, global, sensitive profiling method.

    abstract::GeneTag is a novel expression profiling method that allows the visualization, quantification and identification of expressed genes-whether known or novel-in any species, tissue or cell type, independent of knowledge of the underlying sequence. Here we describe the application of this method to determine variation of g...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(02)00301-2

    authors: Wong LY,Hafeman A,Boyd VL,Bodeau J,Lazaruk KD,Liew SN,Casey P,Belonogoff V,Bit S,Sumner C,Bredo A,Ho N,Chu E,Olson S,Rabkin S,Maltchenko S,Spier G,Gilbert D,Baumhueter S

    更新日期:2003-03-20 00:00:00

  • Process stability and microbial community structure in anaerobic hydrogen-producing microflora from food waste containing kimchi.

    abstract::Hydrogen production by the dark fermentation of food wastes is an economic and environmentally friendly technology to produce the clean energy source as well as to treat the problematic wastes. However, the long-term operations of the continuous anaerobic reactor for fermentative hydrogen production were frequently un...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2007.07.492

    authors: Jo JH,Jeon CO,Lee DS,Park JM

    更新日期:2007-09-15 00:00:00

  • Trans-complementation of polyhedrin by a stably transformed Sf9 insect cell line allows occ- baculovirus occlusion and larval per os infectivity.

    abstract::Oral infection of insect larvae with baculovirus is an advantageous methodology for producing high levels of recombinant proteins and for achieving plague control. However, many recombinant baculoviruses express a foreign protein in lieu of the polyhedrin and hence do not form occlusion bodies (occ-), resulting in ext...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2009.10.015

    authors: López MG,Alfonso V,Carrillo E,Taboga O

    更新日期:2010-01-15 00:00:00

  • Fusion tags and chaperone co-expression modulate both the solubility and the inclusion body features of the recombinant CLIPB14 serine protease.

    abstract::Chaperone co-expression and the fusion to different tags were used to modify the aggregation pattern of the putative serine protease CLIPB14 precipitated in Escherichia coli inclusion bodies. A set of common tags used in expression vectors has been selected, as well as two bacterial strains over-expressing the chapero...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.04.028

    authors: Schrödel A,Volz J,de Marco A

    更新日期:2005-10-17 00:00:00

  • Establishment of a microcarrier culture system with serial sub-cultivation for functionally active human endothelial cells.

    abstract::A microcarrier culture system was established for a large-scale production of functional human endothelial cells. It has been difficult to cultivate human endothelial cells in large quantities for the reasons that specific growth factor and extracellular matrix are required for the survival and proliferation of the ce...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2012.02.022

    authors: Tashiro S,Tsumoto K,Sano E

    更新日期:2012-08-31 00:00:00

  • Efficient glutathione production in metabolically engineered Escherichia coli strains using constitutive promoters.

    abstract::Glutathione (GSH) is an important bioactive tripeptide and widely used in food, medicine and other industries. Recently, the bifunctional glutathione synthetase, GshF, has been applied for efficient GSH production under inducible promoter. In this study, the constitutive expression of GshF from Streptococcus sanguinis...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2018.11.001

    authors: Cui X,Wan J,Zhang X,Wu H,Li Z,Ye Q

    更新日期:2019-01-10 00:00:00

  • In situ-immobilization of two model cyanobacterial strains in ceramic structures: A new biohybrid material for photobioreactor applications.

    abstract::Two cyanobacterial strains, Synechocystis sp. PCC 6803 and Nostoc punctiforme ATCC 29133 were immobilized within magnesium phosphate based cements, showing a viability and activity for at least 4 weeks. These biohybrids are considered as an alternative photobioreactor material for bioremediation or an improved yield o...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2016.02.024

    authors: Vorndran E,Lindberg P

    更新日期:2016-04-10 00:00:00

  • High-yield production of D-1,2,4-butanetriol from lignocellulose-derived xylose by using a synthetic enzyme cascade in a cell-free system.

    abstract::Approaches using metabolic engineering to produce D-1, 2, 4-butanetriol (BT) from renewable biomass in microbial systems have achieved initial success. However, due to the lack of incomplete understanding of the complex branch pathway, the efficient fermentation system for BT production was difficult to develop. Here ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2019.01.004

    authors: Gao Q,Wang X,Hu S,Xu N,Jiang M,Ma C,Yang J,Xu S,Chen K,Ouyang P

    更新日期:2019-02-20 00:00:00

  • Towards the in vivo production of tocotrienol compounds: engineering of a plasmid-free Escherichia coli strain for the heterologous synthesis of 2-methyl-6-geranylgeranyl-benzoquinol.

    abstract::The vitamin E family consists of 4 tocopherol and 4 tocotrienol compounds. During recent years, tocotrienols have gained increased interest due to their biological activities that are beyond the vitamin E activity. Here we report the engineering of plasmid-free Escherichia coli strains for an efficient synthesis of 2-...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2012.08.010

    authors: Ghanegaonkar S,Conrad J,Beifuss U,Sprenger GA,Albermann C

    更新日期:2012-12-15 00:00:00

  • Continuous production of lactulose by immobilized thermostable beta-glycosidase from Pyrococcus furiosus.

    abstract::A continuous enzymatic process for the production of the prebiotic disaccharide lactulose through transgalactosylation was developed using free and immobilized beta-glycosidase from Pyrococcus furiosus. The hyperthermostable beta-glycosidase (CelB) was immobilized onto an anion-exchange resin (Amberlite IRA-93) or ont...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2009.12.017

    authors: Mayer J,Kranz B,Fischer L

    更新日期:2010-02-15 00:00:00

  • On a general model structure for macroscopic biological reaction rates.

    abstract::Macroscopic modelling of bioprocesses requires the determination of a biological reaction scheme and a kinetic model. The a priori selection of an appropriate kinetic model structure is usually made difficult by the lack of detailed bioprocess knowledge and the profusion of apparently similar biological kinetic laws. ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2007.04.006

    authors: Grosfils A,Vande Wouwer A,Bogaerts P

    更新日期:2007-06-30 00:00:00

  • Continuous gas fermentation by Acetobacterium woodii in a submerged membrane reactor with full cell retention.

    abstract::Acetogenic bacteria like Acetobacterium woodii represent an ancient group of anaerobic microorganisms which use hydrogen and carbon dioxide to produce acetate. Cell concentrations and space-time yields are usually low in gas fermentations. A standard stirred‑tank bioreactor with continuous gas supply was equipped with...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2015.07.020

    authors: Kantzow C,Mayer A,Weuster-Botz D

    更新日期:2015-10-20 00:00:00

  • Characterization of a Trichoplusia ni hexamerin-derived promoter in the AcMNPV baculovirus vector.

    abstract::The promoter sequences of the encoding genes for the three most abundant hexamerins of the Lepidoptera Trichoplusia ni were isolated and cloned into the Autographa californica multiple nucleopolyhedrovirus (AcMNPV)-derived baculovirus expression vector. From the sequences analyzed, the DNA region driving the expressio...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2013.03.012

    authors: López-Vidal J,Gómez-Sebastián S,Sánchez-Ramos I,Escribano JM

    更新日期:2013-06-10 00:00:00

  • Genetical identification of Akebia and Aristolochia species by using Pyrosequencing.

    abstract::This study was performed to determine if Akebia and Aristolochia species (Akebia quinata Decaisne and Aristolochia manshuriensis Kom.) could be identified by genetic analysis of Pyrosequencing method, which is used to assess genetic variation. The Pyrosequencing results of Akebia and Aristolochia species showed differ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2005.06.030

    authors: Han S,Kim S,Yang CH,Seo J

    更新日期:2005-12-06 00:00:00

  • Methodological improvements of pyrosequencing technology.

    abstract::Pyrosequencing technology is a rather novel DNA sequencing method based on the sequencing-by-synthesis principle. This bioluminometric, real-time DNA sequencing technique employs a cascade of four enzymatic reactions producing sequence peak signals. The method has been proven highly suitable for single nucleotide poly...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2006.01.025

    authors: Gharizadeh B,Akhras M,Nourizad N,Ghaderi M,Yasuda K,Nyrén P,Pourmand N

    更新日期:2006-07-25 00:00:00

  • Random amplified polymorphic DNA analysis of genetically modified organisms.

    abstract::Randomly amplified polymorphic DNA (RAPD) was used to analyzed 78 samples comprises of certified reference materials (soya and maize powder), raw seeds (soybean and maize), processed food and animal feed. Combination assay of two arbitrary primers in the RAPD analysis enable to distinguish genetically modified organis...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2006.06.001

    authors: Yoke-Kqueen C,Radu S

    更新日期:2006-12-15 00:00:00

  • An efficient gene transfer system for hematopoietic cell line using transient and stable vectors.

    abstract::The hematopoietic system represents an interesting model for gene transfer protocols. Here, we have evaluated the efficiency of a gene transfer system using the polycationic compound SuperFect (Qiagen) and the K562 hematopoietic cell line. Transient and stable vectors carrying the enhanced green fluorescent protein (E...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/s0168-1656(01)00276-0

    authors: Teixeira LA,Fricke CH,Bonorino CB,Bogo MR,Nardi NB

    更新日期:2001-06-15 00:00:00

  • Antigen handling in the gastrointestinal lamina propria.

    abstract::Enteric infections associated with bacteria, viruses and parasites are a world health problem accounting for at least one billion episodes of diarrhoea and up to 10 million deaths in the Third World each year. The widely held conclusion that responses which are protective in the gastrointestinal tract are best stimula...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章,评审

    doi:10.1016/0168-1656(95)00114-X

    authors: Stokes CR,Bailey M

    更新日期:1996-01-26 00:00:00

  • A new molecular approach based on qPCR for the quantification of fecal bacteria in contaminated marine sediments.

    abstract::Harbour sediments are periodically subjected to dredging operations and their management is mainly based on the assessment of the chemical contamination levels, but the potential risks posed by the presence of pathogenic microorganisms have been largely neglected. Here we first developed new molecular protocols based ...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2011.07.033

    authors: Luna GM,Dell'Anno A,Pietrangeli B,Danovaro R

    更新日期:2012-02-20 00:00:00

  • Lack of interaction between AFLR and AFLJ contributes to nonaflatoxigenicity of Aspergillus sojae.

    abstract::Aspergillus sojae, which is believed to be a domesticated strain of Aspergillus parasiticus, contains all of the aflatoxin biosynthetic genes but is unable to produce aflatoxins and is generally recognized as safe (GRAS) for producing fermented foods. In A. parasiticus both aflR, the aflatoxin pathway-specific regulat...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2003.10.012

    authors: Chang PK

    更新日期:2004-02-05 00:00:00

  • Enhancement of the antibacterial activity of an E. faecalis strain by the heterologous expression of enterocin A.

    abstract::The genus Enterococcus occurs as native microbiota of fermented products due to its broad environmental distribution and its resistance to salt concentrations. Enterococcus faecalis F, a non-pathogenic strain isolated from a ripened cheese, has demonstrated useful enzymatic capabilities, a probiotic behavior and antib...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2018.06.346

    authors: Serrano-Maldonado CE,Quirasco M

    更新日期:2018-10-10 00:00:00

  • Simultaneous synthesis of mixtures of lactulose and galacto-oligosaccharides and their selective fermentation.

    abstract::Lactulose and galacto-oligosaccharides (GOS) are well recognized prebiotics derived from lactose. In the synthesis of lactulose with β-galactosidases GOS are also produced, but the ratio of lactulose and GOS in the product can be tuned at will, depending on the operation conditions, so to obtain an optimal product dis...

    journal_title:Journal of biotechnology

    pub_type: 杂志文章

    doi:10.1016/j.jbiotec.2015.06.394

    authors: Guerrero C,Vera C,Acevedo F,Illanes A

    更新日期:2015-09-10 00:00:00