CD and (13)C(alpha)-NMR studies of folding equilibria in a two-stranded coiled coil formed by residues 190-254 of alpha-tropomyosin.

Abstract:

:Synthesis and CD and (13)C(alpha)-NMR studies in a near-neutral saline buffer are reported for a 65-residue peptide ((190)Tm(254)) comprising residues 190-254 of the alpha-tropomyosin chain. CD on a version disulfide cross-linked via the N-terminal cysteine side chains indicates that this dimer is highly helical and melts near 48 degrees C. The CD is independent of peptide concentration, showing that association of (190)Tm(254) stops at the two-strand level. Similar studies on the reduced version show much lower helix content at low temperature, melting points below room temperature, and the expected concentration dependence. The observed melting temperature of the reduced peptide is far below (by 27 degrees C) that expected from an extant analysis of calorimetry data on parent tropomyosin that designates (190)Tm(254) as an independently melting "cooperative block." This disagreement and the pronounced nonadditivity seen when data for (190)Tm(254) are combined with extant data for other subsequences argue decisively against the concept of specific independently melting blocks within the tropomyosin chain. The data for (190)Tm(254) also serve to test recent ideas on the sequence determinants of structure and stability in coiled coils. Analysis shows that some ideas, such as the stabilizing effect of leucine in the d heptad position, find support, but others--such as the destabilizing effect of alanine in d, the dimer-disfavoring effect of beta-branching in d and its dimer-favoring effect in a, and the dimer-directing effect of asparagine in a--are more questionable in tropomyosin than in the leucine zipper coiled coils. (13)C(alpha)-NMR data at two labeled sites, L228(d) and V246(a), of (190)Tm(254) display well-separated resonances for folded and unfolded forms at each site, indicating that the transition is slow on the NMR time scale and thus demonstrating the possibility of obtaining thermodynamic and kinetic information on the transition at the residue level.

journal_name

Biopolymers

journal_title

Biopolymers

authors

Emerson Holtzer M,Mints L,Hogue Angeletti R,d'Avignon DA,Holtzer A

doi

10.1002/1097-0282(20011005)59:4<257::AID-BIP1022>3

subject

Has Abstract

pub_date

2001-10-05 00:00:00

pages

257-65

issue

4

eissn

0006-3525

issn

1097-0282

pii

10.1002/1097-0282(20011005)59:4<257::AID-BIP1022>3

journal_volume

59

pub_type

杂志文章
  • Solid-supported and pegylated H-Pro-Pro-Asp-NHR as catalysts for asymmetric aldol reactions.

    abstract::H-Pro-Pro-Asp-NH2 is a highly active and selective catalyst for asymmetric aldol reactions. Here, the versatility of H-Pro-Pro-Asp-NH2 has been further improved by immobilization on a solid support and functionalization with a short polyethylene glycol linker at the C-terminus. The development, synthesis, and the cata...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20393

    authors: Revell JD,Gantenbein D,Krattiger P,Wennemers H

    更新日期:2006-01-01 00:00:00

  • Transfer RNA recognition by aminoacyl-tRNA synthetases.

    abstract::The aminoacyl-tRNA synthetases are an ancient group of enzymes that catalyze the covalent attachment of an amino acid to its cognate transfer RNA. The question of specificity, that is, how each synthetase selects the correct individual or isoacceptor set of tRNAs for each amino acid, has been referred to as the second...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/(SICI)1097-0282(1999)52:1<1::AID-BIP1>3.0.

    authors: Beuning PJ,Musier-Forsyth K

    更新日期:1999-01-01 00:00:00

  • Review: Probing protein electron transfer mechanisms from the molecular to the cellular length scales.

    abstract::The mechanisms of bridge-mediated electron transfer (ET) reactions vary from coherent deep tunneling to thermally activated hopping. This short review focuses on some developments in the study of protein ET mechanisms at the molecular and at the cellular levels. It explains experimental and theoretical work on the inf...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22169

    authors: Skourtis SS

    更新日期:2013-01-01 00:00:00

  • CD spectral study of Dnp derivatives of amino acids and peptides for their configurational and conformational analysis.

    abstract::Rules relating the stereochemistry of N-Dnp (Dnp: 2,4-dinitrophenyl) derivatives of alpha-amino acids and peptides and the sign of the Cotton effects at the longest wavelength band (ca. 400 nm) are surveyed. Some new data and insights concerning the CD spectra of Dnp-alpha-amino acids are included: i.e., the spectra o...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20198

    authors: Kawai M,Nagai U,Inai Y,Yamamura H,Akasaka R,Takagi S,Miwa Y,Taga T

    更新日期:2005-01-01 00:00:00

  • Chemical structure and chain conformation of the water-insoluble glucan isolated from Pleurotus tuber-regium.

    abstract::A water-insoluble polysaccharide (TM8) was isolated from sclerotium of Pleurotus tuber-regium by extraction with 0.5M NaOH aqueous solutions at 120 degrees C. Its chemical structure was confirmed by infrared, high performance liquid chromatography, gas chromatography, and (13)C NMR in dimethylsulfoxide (DMSO) to be co...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/1097-0282(200111)59:6<457::AID-BIP1050>3.0

    authors: Zhang L,Zhang M,Dong J,Guo J,Song Y,Cheung PC

    更新日期:2001-11-01 00:00:00

  • Conformation of thymosin beta 9 in water/fluoroalcohol solution determined by NMR spectroscopy.

    abstract::The conformation of thymosin beta 9 in solution of 40% (v/v) 1,1,1,3,3,3-hexafluoro-2-propanol-d2 in water has been investigated by two-dimensional 1H-nmr spectroscopy. Under this condition thymosin beta 9 adopts an ordered structure. The determination of the conformation of the peptide was based on a set of 304 appro...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(199705)41:6<623::AID-BIP3>

    authors: Stoll R,Voelter W,Holak TA

    更新日期:1997-05-01 00:00:00

  • Biophysical characterization and unfolding of LEF4 factor of RNA polymerase from AcNPV.

    abstract::Late expression factor 4 (LEF4) is one of the four subunits of Autographa californica nuclear polyhedrosis virus (AcNPV) RNA polymerase. LEF4 was overexpressed in Escherichia coli and recombinant protein was subjected to structural characterization. Chemical induced unfolding of LEF4 was investigated using intrinsic f...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.21180

    authors: Rasheedi S,Suragani M,Haq SK,Ghosh S,Ehtesham NZ,Hasnain SE

    更新日期:2009-07-01 00:00:00

  • Use of Oxyma as pH modulatory agent to be used in the prevention of base-driven side reactions and its effect on 2-chlorotrityl chloride resin.

    abstract::The presence of low pKa N-hydroxylamines is beneficial in peptide chemistry as they reduce some base-mediated side reactions. Here we evaluated the applicability and buffering capacity of Ethyl 2-cyano-2-(hydroxyimino) acetate (Oxyma) in the prevention of aspartimide/piperidide formation and Pro-based overcoupling and...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.21713

    authors: Subirós-Funosas R,El-Faham A,Albericio F

    更新日期:2012-01-01 00:00:00

  • Influence of structure of human, rat, and bovine serum albumins on binding properties of photoactive drug hypericin.

    abstract::Fluorescence binding measurements and molecular modeling were employed to study the interaction of hypericin (Hyp) with human (HSA), rat (RSA), and bovine (BSA) serum albumins. Fluorescence emission data show the solubility of Hyp increasing in the order BSA, HSA, and RSA. Molecular modeling was used to construct the ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10110

    authors: Hritz J,Kascakova S,Ulicny J,Miskovsky P

    更新日期:2002-01-01 00:00:00

  • Studies of low molecular weight samples of glucuronans with various acetylation degree.

    abstract::Partially acetylated, high molecular weight glucuronans were produced by a Sinorhizobium meliloti mutant strain. Two native glucuronan samples with various degrees of acetylation were sonicated to obtain lower molecular weight samples and with low viscosity suitable for chemical modification and (13)C NMR experiments....

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10134

    authors: Pau-Roblot C,Petit E,Sarazin C,Courtois J,Courtois B,Barbotin JN,Séguin JP

    更新日期:2002-06-01 00:00:00

  • Beta-hairpin stabilization in a 28-residue peptide derived from the beta-subunit sequence of human chorionic gonadotropin hormone.

    abstract::The beta-subunit of the human chorionic gonadotropin (hCG) hormone, which is believed to be related to certain types of cancer, contains three hairpin-like fragments. To investigate the role of beta-hairpin formation in the early stages of the hCGbeta folding, a 28-residue peptide with the sequence RDVRFESIRLPGSPRGVNP...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(19991005)50:4<413::AID-BIP

    authors: Silva RA,Sherman SA,Keiderling TA

    更新日期:1999-10-05 00:00:00

  • Effect of EGCG On Fe(III)-induced conformational transition of silk fibroin, a model of protein related to neurodegenerative diseases.

    abstract::The abnormal aggregation of amyloid proteins is reported to play a critical role in the etiology of neurodegenerative disorders. Studies have shown that excessive ferric irons are associated with the misfolding of amyloid proteins, and that (-)-epigallocatechin gallate (EGCG) is a good metallic ion chelator with inhib...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22752

    authors: Xu L,Tu S,Chen C,Zhao J,Zhang Y,Zhou P

    更新日期:2016-02-01 00:00:00

  • Three steps in the thermal unfolding of F-actin: an experimental evidence.

    abstract::The development of differential scanning calorimetry has resulted in an increased interest in studies of the unfolding process in proteins with the aim of identifying domains and interactions with ligands or other proteins. Several of these studies were done with actin and showed that the thermal unfolding of F-actin ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20567

    authors: Gicquaud CR,Heppell B

    更新日期:2006-11-01 00:00:00

  • Multinuclear NMR and FTIR studies of new polyoxaalkyl esters of lasalocid and their complexes with lithium and sodium cations.

    abstract::Three new polyoxaalkyl esters of lasalocid are synthesized. Their ability to form complexes with Li(+) and Na(+) cations is studied using multinuclear NMR methods, FTIR spectroscopy in the middle and far IR regions, and mass spectrometry. It is found that lasalocid esters form only 1:1 complexes with the metal cations...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.10194

    authors: Pankiewicz R,Schroeder G,Gierczyk B,Brzezinski B,Bartl F

    更新日期:2002-10-15 00:00:00

  • Characterization of substance P-membrane interaction by transferred nuclear Overhauser effect.

    abstract::Substance P, one of the mammalian tachykinins, is known to interact strongly with lipid bilayers and this interaction may play a role in the receptor-peptide recognition process. The conformation of substance P bound to vesicles consisting of perdeuterated phosphatidylcholine has been investigated by means of two-dime...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/1097-0282(20001015)54:5<297::AID-BIP10>3.0

    authors: Augé S,Bersch B,Tropis M,Milon A

    更新日期:2000-10-15 00:00:00

  • Beta-amino acid analogs of an insect neuropeptide feature potent bioactivity and resistance to peptidase hydrolysis.

    abstract::Insect neuropeptides of the insect kinin class share a common C-terminal pentapeptide sequence F(1)X(1)(2)X(2)(3)W(4)G(5)-NH(2) (X(2)(3) = P, S, A) and regulate such critical physiological processes as water balance and digestive enzyme release. Analogs of the insect kinin class, in which the critical residues of F(1)...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20638

    authors: Zubrzak P,Williams H,Coast GM,Isaac RE,Reyes-Rangel G,Juaristi E,Zabrocki J,Nachman RJ

    更新日期:2007-01-01 00:00:00

  • Long-range mapping of DNA.

    abstract::Sequence-specific optical signals are used to establish long-range sequence order and identification for fragments hundreds of kilo bases in length. ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22332

    authors: Crothers DM

    更新日期:2013-12-01 00:00:00

  • Effects of segment substitution on the structure and stability of immunoglobulin G binding domain of streptococcal protein G.

    abstract::Structural formation of segments plays pivotal roles in protein folding and stability, but how the segment influences the structural ensemble remains elusive. We engineered two hybrid proteins by replacing the central helical segment of immunoglobulin G binding domain of streptococcal protein G with an alpha-helix or ...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20283

    authors: Du HN,Zhang TY,Chang YG,Lin DH,Hu HY

    更新日期:2005-09-01 00:00:00

  • A method for studying the structure of uniaxially aligned biopolymers using solid state 15N-nmr: application to Bombyx mori silk fibroin fibers.

    abstract::Recent advances in the application of solid state nmr spectroscopy to uniformly aligned biopolymers have opened a window through which to view the detailed structure of biological macromolecules that are unable to be seen with standard techniques for structure determination such as x-ray diffraction. Atomic resolution...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360330513

    authors: Nicholson LK,Asakura T,Demura M,Cross TA

    更新日期:1993-05-01 00:00:00

  • Electron paramagnetic resonance study of water distribution in starch granules.

    abstract::An electron paramagnetic resonance (EPR) study was performed for potato and wheat starch containing Cu2+ ions as a paramagnetic probe. Distribution of water in the starch granules as well as the interactions between the copper and starch matrix of different crystalline structures were determined. EPR spectra of the na...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20504

    authors: Łabanowska M,Bidzińska E,Dyrek K,Szymońska J

    更新日期:2006-08-15 00:00:00

  • Inhibiting viral proteases: challenges and opportunities.

    abstract::Inhibitor design against viral targets must take into account the peculiar characteristics of viral biology-in particular, the plasticity of their replicative machinery. This includes maturational cleavage of the polyprotein, which is mediated by virally encoded proteases. Designing against a movable target is particu...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.10230

    authors: Bianchi E,Pessi A

    更新日期:2002-01-01 00:00:00

  • Biological activity of peptide-conjugated polyion complex matrices consisting of alginate and chitosan.

    abstract::Peptide-conjugated polysaccharide matrices using bioactive laminin-derived peptides are useful biomaterials for tissue and cell engineering. Here, we demonstrate an easy handling preparation method for peptide-polysaccharide matrices using polyion complex with both alginate and chitosan. First, aldehyde-alginate was s...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22983

    authors: Fujimori C,Kumai J,Nakamura K,Gu Y,Katagiri F,Hozumi K,Kikkawa Y,Nomizu M

    更新日期:2017-01-01 00:00:00

  • Revisiting the neighbor exclusion model and its applications.

    abstract::We review the neighbor exclusion model and some of its applications to analyze the binding data of DNA-ligand complexes. We revisit the closed form of the model developed by McGhee and von Hippel in 1974, showing that this classic model can be used to help studying the behavior of DNA contour and persistence lengths w...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.21296

    authors: Rocha MS

    更新日期:2010-01-01 00:00:00

  • Evidence for the 3 10-helical structure of peptides based on antAib, a fluorophoric, anthracene-fused, 1-aminocyclopentane-1-carboxylic acid.

    abstract::Peptides based on 2-amino-2,3-dihydro-1H-cyclopenta[b]anthracene-2-carboxylic acid (antAib), a fluorescent, achiral, alpha-amino acid belonging to the class of C(i) (alpha)-->C(i) (alpha) cyclized, C(alpha,alpha)-disubstituted glycines, combined with L-Ala, up to the hexamer level, were synthesized by solution methods...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.20841

    authors: Wright K,Lohier JF,Wakselman M,Mazaleyrat JP,Peggion C,Formaggio F,Toniolo C

    更新日期:2007-01-01 00:00:00

  • SAR study and conformational analysis of a series of novel peptide G protein-coupled receptor kinase 2 inhibitors.

    abstract::G protein-coupled receptor kinase 2 (GRK2) plays a central role in the cellular transduction network. In particular, during chronic heart failure GRK2 is upregulated and believed to contribute to disease progression. Thereby, its inhibition offers a potential therapeutic solution to several pathological conditions. In...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22295

    authors: Gomez-Monterrey I,Carotenuto A,Cipolletta E,Sala M,Vernieri E,Limatola A,Bertamino A,Musella S,Grieco P,Trimarco B,Novellino E,Iaccarino G,Campiglia P

    更新日期:2014-01-01 00:00:00

  • Chemical strategies to understand the language of ubiquitin signaling.

    abstract::Ubiquitin (Ub) is a small 76 amino acid long protein that is highly conserved in all eukaryotes studied to date. In humans, more than 600 ligases are involved in the reversible modification of specific lysine side-chain amines in substrate proteins by conjugation with the C-terminal carboxylate of Ub. Initially monoub...

    journal_title:Biopolymers

    pub_type: 杂志文章,评审

    doi:10.1002/bip.22253

    authors: Weller CE,Pilkerton ME,Chatterjee C

    更新日期:2014-02-01 00:00:00

  • Optimizing the fold stability of the circularly permuted Trp-cage motif.

    abstract::Through optimization of the linker region and key stabilizing mutations, it has been possible to improve the stability of the circularly permuted (cp) Trp-cage miniprotein. However, even the most stable Trp-cage circular permutants are still less stable than the analogous standard topology (std) Trp-cages. Extending m...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.23327

    authors: Graham KA,Byrne A,Mason M,Andersen NH

    更新日期:2019-12-01 00:00:00

  • Electronic properties of tetrathiafulvalene-modified cyclic-β-peptide nanotube.

    abstract::Cyclic tri-β-peptide having tetrathiafulvalene (TTF) at the side chain was synthesized to prepare a peptide nanotube aligning TTF side chains along the nanotube. The polarized light microscopic observations revealed crystallization of the cyclic peptide by the vapor diffusion method. Fourier-transform infrared and ele...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.22850

    authors: Uji H,Kim H,Imai T,Mitani S,Sugiyama J,Kimura S

    更新日期:2016-05-01 00:00:00

  • Biopolymer excreted by pseudoalteromonas antarctica NF(3), as a coating and protective agent of liposomes against dodecyl maltoside

    abstract::The ability of an exopolymer of glycoproteic character (GP) excreted by a new gram-negative species Pseudoalteromonas antarctica NF(3), to coat phosphatidylcholine (PC) liposomes and to protect these bilayers against the action of the nonionic surfactant dodecyl maltoside was investigated. Transmission electron micros...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0282(199911)50:6<579::AID-BIP2>

    authors: de La Maza A,Codech L,Lopez O,Parra JL,Sabes M,Guinea J

    更新日期:1999-11-01 00:00:00

  • Internal dynamics of linear and superhelical DNA as studied by photon correlation spectroscopy.

    abstract::Photon correlation spectroscopy has been used to study the translational (D0) and internal dynamics of monodisperse linear and polydisperse superhelical plasmid-DNAs. Scattering vector dependent correlation functions were measured and analyzed with the inverse Laplace transform CONTIN written by S. Provencher. For sca...

    journal_title:Biopolymers

    pub_type: 杂志文章

    doi:10.1002/bip.360310702

    authors: Seils J,Dorfmüller T

    更新日期:1991-06-01 00:00:00