Assembly of A beta amyloid protofibrils: an in vitro model for a possible early event in Alzheimer's disease.

Abstract:

:Amyloid fibrils comprising primarily the peptides A beta 40 and A beta 42 are a defining feature of the Alzheimer's disease (AD) brain, and convergent evidence suggests that the process of their formation plays a central role in the AD pathogenic pathway. Elucidation of fibril assembly is critical for the discovery of potential AD diagnostics and therapeutics, since the pathogenic entity is not necessarily the product fibril, but could be a precursor species whose formation is linked to fibrillogenesis in vivo. Atomic force microscopy allowed the identification of an unanticipated intermediate in in vitro fibril formation, the A beta amyloid protofibril. This manuscript describes studies of the structure of the A beta 40 protofibril and its in vitro assembly and disassembly using atomic force microscopy (AFM). The A beta 40 protofibril has a height of ca. 4.3 +/- 0.5 nm and a periodicity of ca. 20 +/- 4.7 nm. The rate of its elongation depends on the total concentration of A beta 40, the temperature, and ionic strength of the medium. A beta 42 and A beta 40 protofibrils elongate at a comparable rate. Statistical analysis of AFM data reveals a decrease in the number of protofibrils with time, indicating that coalescence of smaller protofibrils contributes to protofibril elongation. Similar analysis reveals that protofibrils shorten while the number of protofibrils also decrease following dilution, indicating that protofibril disassembly does not proceed by a reverse of the assembly process. These investigations provide systematic data defining factors affecting A beta fibrillization and, thus, should be valuable in the design of high-throughput assays to identify agents which alter A beta protofibril assembly.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Harper JD,Wong SS,Lieber CM,Lansbury PT Jr

doi

10.1021/bi9904149

subject

Has Abstract

pub_date

1999-07-13 00:00:00

pages

8972-80

issue

28

eissn

0006-2960

issn

1520-4995

pii

bi9904149

journal_volume

38

pub_type

杂志文章
  • Rational modification of protein stability by the mutation of charged surface residues.

    abstract::Continuum methods were used to calculate the electrostatic contributions of charged and polar side chains to the overall stability of a small 41-residue helical protein, the peripheral subunit-binding domain. The results of these calculations suggest several residues that are destabilizing, relative to hydrophobic iso...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992091m

    authors: Spector S,Wang M,Carp SA,Robblee J,Hendsch ZS,Fairman R,Tidor B,Raleigh DP

    更新日期:2000-02-08 00:00:00

  • Nuclear magnetic resonance studies of 2'- and 3'-ribonucleotide structures in solution.

    abstract::A systematic 220-MHz proton nuclear magnetic resonance (nmr) study has been made of all common purine and pyrimidine 2'(3')-ribonucleotides in D2O solutions at 20 plus or minus 2 degrees. Spectra for the entire series were measured under similar conditions of concentration, temperature, and ionic strength, thereby fac...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00674a013

    authors: Davies DB,Danyluk SS

    更新日期:1975-02-11 00:00:00

  • Three-dimensional structure of the respiratory chain supercomplex I1III2IV1 from bovine heart mitochondria.

    abstract::The respiratory chain complexes can arrange into multienzyme assemblies, so-called supercomplexes. We present the first 3D map of a respiratory chain supercomplex. It was determined by random conical tilt electron microscopy analysis of a bovine supercomplex consisting of complex I, dimeric complex III, and complex IV...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700983h

    authors: Schäfer E,Dencher NA,Vonck J,Parcej DN

    更新日期:2007-11-06 00:00:00

  • The binding of the PDZ tandem of syntenin to target proteins.

    abstract::PDZ domains are among the most abundant protein modules in the known genomes. Their main function is to provide scaffolds for membrane-associated protein complexes by binding to the cytosolic, C-terminal fragments of receptors, channels, and other integral membrane proteins. Here, using both heteronuclear NMR and sing...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi052225y

    authors: Grembecka J,Cierpicki T,Devedjiev Y,Derewenda U,Kang BS,Bushweller JH,Derewenda ZS

    更新日期:2006-03-21 00:00:00

  • Temperature dependence of the structure of the substrate and active site of the Thermus thermophilus chorismate mutase E x S complex.

    abstract::Molecular dynamics (MD) simulations of Thermus thermophilus chorismate mutase substrate complex (TtCM x S) have been carried out at 298 K, 333 K, and the temperature of optimum activity: 343 K. The enzyme exists as trimeric subunits with active sites shared between two neighboring subunits. Two features distinguish in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0604227

    authors: Zhang X,Bruice TC

    更新日期:2006-07-18 00:00:00

  • Conformation of myosin interdomain interactions during contraction: deductions from muscle fibers using polarized fluorescence.

    abstract::Myosin cross-bridge subfragment 1 (S1) is the ATP catalyzing motor protein in muscle. It consists of three domains that catalyze ATP and bind actin (catalytic), conduct energy transduction (converter), and transport the load (lever arm). Force development during contraction is thought to result from rotary lever arm m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002387o

    authors: Burghardt TP,Cruz-Walker AR,Park S,Ajtai K

    更新日期:2001-04-17 00:00:00

  • Kinetic characterization of the carbon monoxide-acetyl-CoA (carbonyl group) exchange activity of the acetyl-CoA synthesizing CO dehydrogenase from Clostridium thermoaceticum.

    abstract::CO dehydrogenase from Clostridium thermoaceticum is a nickel-containing enzyme that catalyzes both the reversible conversion of CO2 to CO (for incorporation into the carbonyl group of acetate) and the synthesis of acetyl-CoA from methyl corrinoid, CO, and CoASH. The latter activity is conveniently assayed by monitorin...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00420a019

    authors: Raybuck SA,Bastian NR,Orme-Johnson WH,Walsh CT

    更新日期:1988-10-04 00:00:00

  • Structure and mechanism of DNA polymerase β.

    abstract::DNA polymerase (pol) β is a small eukaryotic DNA polymerase composed of two domains. Each domain contributes an enzymatic activity (DNA synthesis and deoxyribose phosphate lyase) during the repair of simple base lesions. These domains are termed the polymerase and lyase domains, respectively. Pol β has been an excelle...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500139h

    authors: Beard WA,Wilson SH

    更新日期:2014-05-06 00:00:00

  • Solution structure of the first intracellular loop of prostacyclin receptor and implication of its interaction with the C-terminal segment of G alpha s protein.

    abstract::The amino acids (residues 39-51) responsible for the interaction between the first intracellular loop (iLP1) of the human prostacyclin receptor (IP) and G alpha s protein have been identified [Zhang, L., Huang, G., Wu, J., and Ruan, K. H. (2005) Biochemistry 44, 11389-11401]. To further characterize the structural/fun...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0515669

    authors: Zhang L,Wu J,Ruan KH

    更新日期:2006-02-14 00:00:00

  • Investigation of the aggregation and activation of prothrombin using quasi-elastic light scattering.

    abstract::The technique of quasi-elastic light scattering was used to measure the translational diffusion coefficient, D, of purified human prothrombin in buffered aqueous solutions and to monitor for the first time the fragmentation of this protein as it is converted to thrombin. The values of D20,w, measured at two different ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00628a016

    authors: Agarwal GP,Gallagher JG,Aune KC,Armeniades CD

    更新日期:1977-05-03 00:00:00

  • Nuclear magnetic resonance solution structure of an undecanucleotide duplex with a complementary thymidine base opposite a 10R adduct derived from trans addition of a deoxyadenosine N6-amino group to (-)-(7R,8S,9R,10S)-7,8-dihydroxy- 9,10-epoxy-7,8,9,10-t

    abstract::The solution structure of a modified undecamer duplex containing (-)-(7R,8S,9R,10S)-7,8-dihydroxy-9,10-epoxy-7,8,9,10-tetrahydrobenzo[a] pyrene covalently bonded through trans ring opening at C10 of the epoxide by the N6-amino group of deoxyadenosine (dA) was studied. This diol epoxide 1 diastereomer has the benzylic ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00028a009

    authors: Schurter EJ,Sayer JM,Oh-hara T,Yeh HJ,Yagi H,Luxon BA,Jerina DM,Gorenstein DG

    更新日期:1995-07-18 00:00:00

  • Differential scanning calorimetric study of a homologous series of fully hydrated saturated mixed-chain C(X):C(X + 6) phosphatidylcholines.

    abstract::The successive high-resolution differential scanning calorimetric (DSC) thermograms for aqueous dispersions of a homologous series of mixed-chain phosphatidylcholines, C(X):C(X + 6)PC, have been recorded and analyzed. In this series of saturated mixed-chain phosphatidylcholines, the total number of carbon atoms in the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00482a018

    authors: Wang ZQ,Lin HN,Huang CH

    更新日期:1990-07-31 00:00:00

  • The binding of complementary oligoribonucleotides to yeast initiator Transfer RNA.

    abstract::Oligoribonucleotide binding to baker's yeast initiator tRNA was measured by equilibrium dialysis in order to determine which regions of the tRNA were free to bind complementary oligomers and which were involved in secondary and tertiary structure. Association constants of trinucleoside diphosphates and tetranucleoside...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00686a004

    authors: Freier SM,Tinoco I Jr

    更新日期:1975-07-29 00:00:00

  • Human endonuclease III acts preferentially on DNA damage opposite guanine residues in DNA.

    abstract::The human endonuclease III homologue (hNTH1) removes premutagenic cytosine damage from DNA. This includes 5-hydroxycytosine, which has increased potential for pairing with adenine, resulting in C --> T transition mutations. Here we report that hNTH1 acts on both 5-hydroxycytosine and abasic sites preferentially when t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0028901

    authors: Eide L,Luna L,Gustad EC,Henderson PT,Essigmann JM,Demple B,Seeberg E

    更新日期:2001-06-05 00:00:00

  • Identification of effector binding sites on S100 beta: studies with guanylate cyclase and p80, a retinal phosphoprotein.

    abstract::S100 beta is a calcium-binding protein, which regulates the activities of several enzymes and inhibits the phosphorylation of a variety of protein kinase C substrates in a calcium-dependent manner. The protein was recently found to activate a retinal membrane guanylate cyclase, and in this paper, we report that it inh...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9802115

    authors: Pozdnyakov N,Margulis A,Sitaramayya A

    更新日期:1998-07-28 00:00:00

  • Is the PTPase-vanadate complex a true transition state analogue?

    abstract::Vanadate can often bind to phosphoryl transfer enzymes to form a trigonal-bipyramidal structure at the active site. The enzyme-vanadate dissociation constants in these enzymes are much lower than those for phosphate. Therefore, enzyme-bound vanadate moieties are often considered as transition state analogues. To test ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi016097z

    authors: Deng H,Callender R,Huang Z,Zhang ZY

    更新日期:2002-05-07 00:00:00

  • Acetyltransfer precedes uridylyltransfer in the formation of UDP-N-acetylglucosamine in separable active sites of the bifunctional GlmU protein of Escherichia coli.

    abstract::The GlmU protein is a bifunctional enzyme with both acetyltransferase and uridylyltransferase (pyrophosphorylase) activities which catalyzes the transformation of glucosamine-1-P, UTP, and acetyl-CoA to UDP-N-acetylglucosamine [Mengin-Lecreulx, D., & van Heijenoort, J. (1994) J. Bacteriol. 176, 5788-5795], a fundament...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952275a

    authors: Gehring AM,Lees WJ,Mindiola DJ,Walsh CT,Brown ED

    更新日期:1996-01-16 00:00:00

  • Novel inactivators of serine proteases based on 6-chloro-2-pyrone.

    abstract::The interaction of serine protease (esterases) with 6-chloro-2-pyrones was investigated. Time-dependent inactivation of chymotrypsin, alpha-lytic protease, pig liver elastase, and cholinesterase was found with 3- and 5-benzyl-6-chloro-2-pyrone, as well as 3- and 5-methyl-6-chloro-2-pyrone. No inactivation was observed...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00282a034

    authors: Westkaemper RB,Abeles RH

    更新日期:1983-06-21 00:00:00

  • Role of Asn112 in a Light-Driven Sodium Ion-Pumping Rhodopsin.

    abstract::Light-driven outward sodium-pumping rhodopsin (NaR) was recently found in marine bacteria. Krokinobacter eikastus rhodopsin 2 (KR2) actively transports sodium and lithium ions in NaCl and LiCl, respectively, while it pumps protons in KCl. NaR has a conserved NDQ (N112, D116, and Q123 in KR2) motif, and previous studie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00741

    authors: Abe-Yoshizumi R,Inoue K,Kato HE,Nureki O,Kandori H

    更新日期:2016-10-18 00:00:00

  • Phase-resolved spectral measurements with several two tryptophan containing proteins.

    abstract::We have used frequency domain fluorescence techniques to resolve the component emission spectra for several two tryptophan containing proteins (e.g., horse liver alcohol dehydrogenase, sperm whale apomyoglobin, yeast 3-phosphoglycerate kinase, apoazurin from Alcaligenes denitricans). We have first performed multifrequ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00399a047

    authors: Eftink MR,Wasylewski Z,Ghiron CA

    更新日期:1987-12-15 00:00:00

  • Purification and characterization of a transmembrane domain-deleted form of lecithin retinol acyltransferase.

    abstract::Lecithin retinol acyltransferase (LRAT) catalyzes the esterification of all-trans-retinol into all-trans-retinyl ester, an essential reaction in the vertebrate visual cycle. Since all-trans-retinyl esters are the substrates for the isomerization reaction that generates 11-cis-retinoids, this esterification reaction is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0342416

    authors: Bok D,Ruiz A,Yaron O,Jahng WJ,Ray A,Xue L,Rando RR

    更新日期:2003-05-27 00:00:00

  • In vitro reconstitution of the first steps of anatoxin-a biosynthesis in Oscillatoria PCC 6506: from free L-proline to acyl carrier protein bound dehydroproline.

    abstract::Anatoxin-a and homoanatoxin-a are two potent cyanobacterial neurotoxins. We recently reported the identification of the gene cluster responsible for the biosynthesis of these toxins in cyanobacteria and proposed a biosynthetic scheme starting from L-proline and involving three polyketide synthases for which the starte...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9018785

    authors: Méjean A,Mann S,Vassiliadis G,Lombard B,Loew D,Ploux O

    更新日期:2010-01-12 00:00:00

  • Mutations affecting the activity of toxic shock syndrome toxin-1.

    abstract::Toxic shock syndrome toxin-1 (TSST-1), the potent staphylococcal exoprotein linked to most cases of the toxic shock syndrome, is a V beta-restricted T-cell mitogen (a so-called "superantigen"). TSST-ovine (TSST-O) is a natural variant of TSST-1, and is produced by certain ovine mastitis-associated strains of Staphyloc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00209a016

    authors: Deresiewicz RL,Woo J,Chan M,Finberg RW,Kasper DL

    更新日期:1994-11-01 00:00:00

  • Oxygen yield and thermoluminescence characteristics of a cyanobacterium lacking the manganese-stabilizing protein of photosystem II.

    abstract::Previous experiments have shown that a Synechocystis sp. PCC 6803 mutant (delta psbO) lacking the extrinsic manganese-stabilizing protein (MSP) exhibits impaired, but significant levels of H2O-splitting activity [Burnap, R., & Sherman, L.A. (1991) Biochemistry 30, 440-446]. [14C]DCMU-binding experiments now show that ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00147a027

    authors: Burnap RL,Shen JR,Jursinic PA,Inoue Y,Sherman LA

    更新日期:1992-08-18 00:00:00

  • Calmodulin-dependent autophosphorylation of smooth muscle myosin light chain kinase: intermolecular reaction mechanism via dimerization of the kinase and potentiation of the catalytic activity following activation.

    abstract::In the presence of Ca2+ and calmodulin (CM), purified smooth muscle myosin light chain kinase (MLCKase) was found to undergo autophosphorylation at a rate that was about 200-fold slower than its catalytic activity. Up to 1.7 mol of phosphate were incorporated per mole of kinase. Lower levels of incorporation could be ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00037a025

    authors: Sobieszek A

    更新日期:1995-09-19 00:00:00

  • Disrupted zinc-binding sites in structures of pathogenic SOD1 variants D124V and H80R.

    abstract::Mutations in human copper-zinc superoxide dismutase (SOD1) cause an inherited form of the fatal neurodegenerative disease amyotrophic lateral sclerosis (ALS). Here, we present structures of the pathogenic SOD1 variants D124V and H80R, both of which demonstrate compromised zinc-binding sites. The disruption of the zinc...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100314n

    authors: Seetharaman SV,Winkler DD,Taylor AB,Cao X,Whitson LJ,Doucette PA,Valentine JS,Schirf V,Demeler B,Carroll MC,Culotta VC,Hart PJ

    更新日期:2010-07-13 00:00:00

  • Folding/unfolding kinetics of mutant forms of iso-1-cytochrome c with replacement of proline-71.

    abstract::Proline-71, an evolutionally conserved residue that separates two short alpha-helical regions, is replaced by valine, threonine, or isoleucine in at least partially functional forms of iso-1-cytochrome c from Saccharomyces cerevisiae [Ernst, J. F., Hampsey, D. M., Stewart, J. W., Rackovsky, S., Goldstein, D., & Sherma...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00370a033

    authors: Ramdas L,Nall BT

    更新日期:1986-11-04 00:00:00

  • Hemagglutinins from two influenza virus variants bind to sialic acid derivatives with millimolar dissociation constants: a 500-MHz proton nuclear magnetic resonance study.

    abstract::The equilibrium binding of influenza virus hemagglutinin to derivatives of its cell-surface ligand, sialic acid, was measured by nuclear magnetic resonance (NMR) spectroscopy. Binding was quantified by observing perturbations of sialic acid resonances in the presence of protein. The major perturbation observed was a c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00447a018

    authors: Sauter NK,Bednarski MD,Wurzburg BA,Hanson JE,Whitesides GM,Skehel JJ,Wiley DC

    更新日期:1989-10-17 00:00:00

  • Role of lys100 in human dihydroorotate dehydrogenase: mutagenesis studies and chemical rescue by external amines.

    abstract::Chemical modification, mutagenesis, chemical rescue, and isotope effect studies are used to identify and probe the roles of several conserved amino acid groups in catalysis by human dihydroorotate dehydrogenase. Time- and pH-dependent inactivation of human dihydroorotate dehydrogenase by trinitrobenzenesulfonate impli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000630d

    authors: Jiang W,Locke G,Harpel MR,Copeland RA,Marcinkeviciene J

    更新日期:2000-07-11 00:00:00

  • Electrostatic interactions during acidic phospholipid reactivation of DnaA protein, the Escherichia coli initiator of chromosomal replication.

    abstract::The initiation of Escherichia coli chromosomal replication by DnaA protein is strongly influenced by the tight binding of the nucleotides ATP and ADP. Anionic phospholipids in a fluid bilayer promote the conversion of inactive ADP-DnaA protein to replicatively active ATP-DnaA protein in vitro, and thus likely play a k...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi982733q

    authors: Kitchen JL,Li Z,Crooke E

    更新日期:1999-05-11 00:00:00