FlyBase: the Drosophila database.

Abstract:

:FlyBase is a database of genetic and molecular data concerning Drosophila. FlyBase is maintained as a relational database (in Sybase). The scope of FlyBase includes: genes, alleles (and phenotypes), aberrations, pointers to sequence data, clones, stock lists, Drosophila workers and bibliographic references. FlyBase is also available on CD-ROM for Macintosh systems (Encyclopaedia of Drosophila).

journal_name

Nucleic Acids Res

journal_title

Nucleic acids research

authors

Flybase Consortium.

doi

10.1093/nar/24.1.53

subject

Has Abstract

pub_date

1996-01-01 00:00:00

pages

53-6

issue

1

eissn

0305-1048

issn

1362-4962

pii

5s1047

journal_volume

24

pub_type

杂志文章
  • Restriction endonuclease isoschizomers ItaI, BsoFI and Fsp4HI are characterised by differences in their sensitivities to CpG methylation.

    abstract::BsoFI , ItaI and Fsp4HI are isoshizomers of Fnu4HI (5'-GC NGC-3'). Both Fnu4HI and BsoFI have previously been shown to be inhibited by cytosine-specific methylation within the recognition sequence. Fnu4HI is inhibited if either the internal cytosine at position 2 or the external cytosine at position 5 of the restricti...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/25.16.3196

    authors: Ramsahoye BH,Burnett AK,Taylor C

    更新日期:1997-08-15 00:00:00

  • Gene expression atlas at the European bioinformatics institute.

    abstract::The Gene Expression Atlas (http://www.ebi.ac.uk/gxa) is an added-value database providing information about gene expression in different cell types, organism parts, developmental stages, disease states, sample treatments and other biological/experimental conditions. The content of this database derives from curation, ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkp936

    authors: Kapushesky M,Emam I,Holloway E,Kurnosov P,Zorin A,Malone J,Rustici G,Williams E,Parkinson H,Brazma A

    更新日期:2010-01-01 00:00:00

  • Polynucleotide:adenosine glycosidase activity of ribosome-inactivating proteins: effect on DNA, RNA and poly(A).

    abstract::Ribosome-inactivating proteins (RIP) are a family of plant enzymes for which a unique activity was determined: rRNAN-glycosidase at a specific universally conserved position, A4324in the case of rat ribosomes. Recently we have shown that the RIP from Saponaria officinalis have a much wider substrate specificity: they ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/25.3.518

    authors: Barbieri L,Valbonesi P,Bonora E,Gorini P,Bolognesi A,Stirpe F

    更新日期:1997-02-01 00:00:00

  • Dissecting the function of the adult β-globin downstream promoter region using an artificial zinc finger DNA-binding domain.

    abstract::Developmental stage-specific expression of the β-type globin genes is regulated by many cis- and trans-acting components. The adult β-globin gene contains an E-box located 60 bp downstream of the transcription start site that has been shown to bind transcription factor upstream stimulatory factor (USF) and to contribu...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gku107

    authors: Barrow JJ,Li Y,Hossain M,Huang S,Bungert J

    更新日期:2014-04-01 00:00:00

  • LocDB: experimental annotations of localization for Homo sapiens and Arabidopsis thaliana.

    abstract::LocDB is a manually curated database with experimental annotations for the subcellular localizations of proteins in Homo sapiens (HS, human) and Arabidopsis thaliana (AT, thale cress). Currently, it contains entries for 19,604 UniProt proteins (HS: 13,342; AT: 6262). Each database entry contains the experimentally der...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkq927

    authors: Rastogi S,Rost B

    更新日期:2011-01-01 00:00:00

  • A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii.

    abstract::Plant mitochondrial genomes show much more evolutionary plasticity than those of animals. We analysed the first mitochondrial DNA (mtDNA) of a lycophyte, the quillwort Isoetes engelmannii, which is separated from seed plants by more than 350 million years of evolution. The Isoetes mtDNA is particularly rich in recombi...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkp532

    authors: Grewe F,Viehoever P,Weisshaar B,Knoop V

    更新日期:2009-08-01 00:00:00

  • A comparison of experimental and theoretical melting maps for replicative form of phi X174 DNA.

    abstract::A previously elaborated technique for fixing a chosen partially melted state of DNA with glyoxal was used in a study of the melting process of the replicative form (RF III) of phi X174 DNA. Electron-microscopic maps corresponding to five points of the melting curve of RF III were obtained and compared with the theoret...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/10.6.1867

    authors: Lyubchenko YuL,Kalambet YuA,Lyamichev VI,Borovik AS

    更新日期:1982-03-25 00:00:00

  • Identification of a novel epigenetic regulatory region within the pluripotency associated microRNA cluster, EEmiRC.

    abstract::The miR-290 cluster is expressed in embryonic stem cells (ESCs) and is important for the maintenance of pluripotency, but little is known about the mechanisms regulating the early embryonic microRNA cluster (EEmiRC) expression. Here we report the identification of a 332-bp intragenic enhancer (IE) able to modulate the...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkq1344

    authors: Tata PR,Tata NR,Kühl M,Sirbu IO

    更新日期:2011-05-01 00:00:00

  • Complementary addressed modification of yeast tRNA Val 1 with alkylating derivative of d(pC-G)-A. The positions of the alkylated nucleotides and the course of the alkylation in the complex.

    abstract::Yeast tRNA Val 1 alkylation with 2', 3'-O-4-(N-2-chloroethyl-N-methylamino) benzylidene d(pC-G)-A proceeds at 20 degrees - 30 degrees C in the complementary complexes which are formed by d(pC-G)-A greater than RC1 binding to 3 sequences of tRNA Val 1 : psi-C-G58 in the T loop, C-G40 at the 3'-side of the anticodon loo...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/4.5.1609

    authors: Grineva NI,Karpova GG,Kuznetsova LM,Venkstern TV,Bayev AA

    更新日期:1977-01-01 00:00:00

  • A novel method for accurate operon predictions in all sequenced prokaryotes.

    abstract::We combine comparative genomic measures and the distance separating adjacent genes to predict operons in 124 completely sequenced prokaryotic genomes. Our method automatically tailors itself to each genome using sequence information alone, and thus can be applied to any prokaryote. For Escherichia coli K12 and Bacillu...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gki232

    authors: Price MN,Huang KH,Alm EJ,Arkin AP

    更新日期:2005-02-08 00:00:00

  • On the fidelity of DNA replication: herpes DNA polymerase and its associated exonuclease.

    abstract::Procaryotic DNA polymerases contain an associated 3'----5' exonuclease activity which provides a proofreading function and contributes substantially to replication fidelity. DNA polymerases of the eucaryotic herpes-type viruses contain similar associated exonuclease activities. We have investigated the fidelity of pol...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/15.3.1185

    authors: Abbotts J,Nishiyama Y,Yoshida S,Loeb LA

    更新日期:1987-02-11 00:00:00

  • A novel family of retrotransposon-like elements in Xenopus laevis with a transcript inducible by two growth factors.

    abstract::A cDNA clone named 1A11 was isolated in a screen for genes that are activated by both mesoderm inducing factors FGF and activin in animal explants of Xenopus laevis embryos. In undisturbed embryos, 1A11 is expressed during the gastrula stage in the entire marginal zone where mesoderm originates, and later in the somit...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/21.10.2375

    authors: Greene JM,Otani H,Good PJ,Dawid IB

    更新日期:1993-05-25 00:00:00

  • Tumor-associated mutations of rat mitochondrial transfer RNA genes.

    abstract::Mitochondrial DNA is a sensitive target of chemical carcinogens (Backer and Weinstein (1980) Science 209, 297-299), suggesting that mutations of the mitochondrial genome occur in tumor cells. We examined this point by comparing mitochondrial DNA sequences in four rat tumors with those of normal rat liver. Some novel m...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/11.6.1635

    authors: Taira M,Yoshida E,Kobayashi M,Yaginuma K,Koike K

    更新日期:1983-03-25 00:00:00

  • The hnRNP F protein: unique primary structure, nucleic acid-binding properties, and subcellular localization.

    abstract::More than 20 different heterogeneous nuclear ribonucleoproteins (hnRNPs) are associated with pre-mRNAs in the nucleus of mammalian cells and these proteins appear to influence pre-mRNA processing and other aspects of mRNA metabolism and transport. The arrangement of hnRNP proteins on pre-mRNAs is likely to be unique f...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/22.6.1059

    authors: Matunis MJ,Xing J,Dreyfuss G

    更新日期:1994-03-25 00:00:00

  • Nucleotide sequence, genomic organization and evolution of a major repetitive DNA family in tilapia (Oreochromis mossambicus/hornorum).

    abstract::A highly repetitive DNA sequence from tilapia (Oreochromis mossambicus/hornorum) has been cloned and sequenced. It is a tandemly arrayed sequence of 237 bp and constitutes 7% of the fish genome. The copy number of the repeat is approximately 3 x 10(5) per haploid genome. DNA sequence analysis of 7 cloned repeats revea...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/17.13.5071

    authors: Wright JM

    更新日期:1989-07-11 00:00:00

  • The major transcription initiation site of the SV40 late promoter is a potent thyroid hormone response element.

    abstract::Thyroid hormone receptors (TRs) are members of the nuclear hormone receptor superfamily, which act as transcription factors upon binding to specific DNA sequences called thyroid hormone (T3) response elements (TREs). Such elements are found in the upstream regulatory region of promoters as well as in intragenic sequen...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/25.9.1774

    authors: Desvergne B,Favez T

    更新日期:1997-05-01 00:00:00

  • ADAR2 A-->I editing: site selectivity and editing efficiency are separate events.

    abstract::ADAR enzymes, adenosine deaminases that act on RNA, form a family of RNA editing enzymes that convert adenosine to inosine within RNA that is completely or largely double-stranded. Site-selective A-->I editing has been detected at specific sites within a few structured pre-mRNAs of metazoans. We have analyzed the edit...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkg681

    authors: Källman AM,Sahlin M,Ohman M

    更新日期:2003-08-15 00:00:00

  • Temperature mediated variation of DNA secondary structure in (A.T) clusters; evidence by use of the oligopeptide netropsin as a structural probe.

    abstract::The titration viscometric investigation of the multi-mode interaction of netropsin (Nt) with (A.T) clusters of NaDNA12 and NH4DNA10 has been extended to different temperatures. The position of two boundaries on the r-scale (r= [Nt]bound/[DNA-P]) with increasing temperature steadily (rI/II) or more abruptly (rO/I) shif...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/9.10.2335

    authors: Reinert KE,Geller D,Stutter E

    更新日期:1981-05-25 00:00:00

  • Cloning, characterization and evolution of the BsuFI restriction endonuclease gene of Bacillus subtilis and purification of the enzyme.

    abstract::The restriction endonuclease (R.BsuFI) of Bacillus subtilis recognizes the target DNA sequence 5' CCGG. The R.BsuFI gene was found in close proximity to the cognate M.BsuFI gene, which had previously been characterized (1). Cloning of the R.BsuFI gene in E.coli was only possible with the M.BsuFI Mtase gene present on ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/19.23.6457

    authors: Kapfer W,Walter J,Trautner TA

    更新日期:1991-12-11 00:00:00

  • A new method of representing DNA sequences which combines ease of visual analysis with machine readability.

    abstract::A new method of representing DNA sequences has been devised which is termed stave projection. Compared with other formats for showing the base sequences of DNA, this method greatly enhances the ease of visual analysis of the sequences of bases and it is also in a machine readable form. Using this method it is possible...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/14.1.509

    authors: Cowin JE,Jellis CH,Rickwood D

    更新日期:1986-01-10 00:00:00

  • Transcription activation by the siderophore sensor Btr is mediated by ligand-dependent stimulation of promoter clearance.

    abstract::Bacterial transcription factors often function as DNA-binding proteins that selectively activate or repress promoters, although the biochemical mechanisms vary. In most well-understood examples, activators function by either increasing the affinity of RNA polymerase (RNAP) for the target promoter, or by increasing the...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkr1280

    authors: Gaballa A,MacLellan S,Helmann JD

    更新日期:2012-04-01 00:00:00

  • W-IQ-TREE: a fast online phylogenetic tool for maximum likelihood analysis.

    abstract::This article presents W-IQ-TREE, an intuitive and user-friendly web interface and server for IQ-TREE, an efficient phylogenetic software for maximum likelihood analysis. W-IQ-TREE supports multiple sequence types (DNA, protein, codon, binary and morphology) in common alignment formats and a wide range of evolutionary ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkw256

    authors: Trifinopoulos J,Nguyen LT,von Haeseler A,Minh BQ

    更新日期:2016-07-08 00:00:00

  • Alternative 5' exons either provide or deny an initiator methionine codon to the same alpha-tubulin coding region.

    abstract::The primary structures of two overlapping novel alpha-tubulin cDNA clones isolated from a Macaca fascicularis testis cDNA library and the corresponding human gene are presented. Although the general structure of the human gene conforms to that of previously described mammalian alpha-tubulin genes, there is a surprisin...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/15.1.199

    authors: Dobner PR,Kislauskis E,Wentworth BM,Villa-Komaroff L

    更新日期:1987-01-12 00:00:00

  • Human RNA lariat debranching enzyme cDNA complements the phenotypes of Saccharomyces cerevisiae dbr1 and Schizosaccharomyces pombe dbr1 mutants.

    abstract::The cDNA encoding the human RNA lariat debranching enzyme (hDBR1) was identified and cloned by searching the Expressed Sequence Tag (EST) database and screening a HeLa cDNA library, based on predicted amino acid sequence homologies with the Saccharomyces cerevisiae, Schizosaccharomyces pombe and Caenorhabditis elegans...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/28.18.3666

    authors: Kim JW,Kim HC,Kim GM,Yang JM,Boeke JD,Nam K

    更新日期:2000-09-15 00:00:00

  • High efficiency, site-specific excision of a marker gene by the phage P1 cre-loxP system in the yellow fever mosquito, Aedes aegypti.

    abstract::The excision of specific DNA sequences from integrated transgenes in insects permits the dissection in situ of structural elements that may be important in controlling gene expression. Furthermore, manipulation of potential control elements in the context of a single integration site mitigates against insertion site i...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gng148

    authors: Jasinskiene N,Coates CJ,Ashikyan A,James AA

    更新日期:2003-11-15 00:00:00

  • Isolation and sequence analysis of rpoH genes encoding sigma 32 homologs from gram negative bacteria: conserved mRNA and protein segments for heat shock regulation.

    abstract::The rpoH genes encoding homologs of Escherichia coli sigma 32 (heat shock sigma factor) were isolated and sequenced from five gram negative proteobacteria (gamma or alpha subgroup): Enterobacter cloacae (gamma), Serratia marcescens (gamma), Proteus mirabilis (gamma), Agrobacterium tumefaciens (alpha) and Zymomonas mob...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:

    authors: Nakahigashi K,Yanagi H,Yura T

    更新日期:1995-11-11 00:00:00

  • One size does not fit all: on how Markov model order dictates performance of genomic sequence analyses.

    abstract::The structural simplicity and ability to capture serial correlations make Markov models a popular modeling choice in several genomic analyses, such as identification of motifs, genes and regulatory elements. A critical, yet relatively unexplored, issue is the determination of the order of the Markov model. Most biolog...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gks1285

    authors: Narlikar L,Mehta N,Galande S,Arjunwadkar M

    更新日期:2013-02-01 00:00:00

  • The nucleotide sequence of a UGA suppressor serine tRNA from Schizosaccharomyces pombe.

    abstract::The UGA suppressor tRNA produced by Schizosaccharomyces pombe strain sup3-e was purified to homogeneity. It can be aminoacylated with a serine by a crude aminoacyl-tRNA synthetase preparation from S. pombe cells. By combining post-labeling fingerprinting and gel sequencing methods the nucleotide sequence of this tRNA ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/6.8.2683

    authors: Rafalski A,Kohli J,Agris P,Söll D

    更新日期:1979-06-25 00:00:00

  • Guanine tracts enhance sequence directed DNA bends.

    abstract::Synthetic DNA fragments were constructed to determine the effect of G tracts, in conjunction with periodically spaced A tracts, on DNA bends. Relative length measurements showed that the G tracts spaced at the half helical turn enhanced the DNA bend. When the G tract was interrupted with a thymine or shortened to one ...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/18.4.817

    authors: Milton DL,Casper ML,Wills NM,Gesteland RF

    更新日期:1990-02-25 00:00:00

  • FlyRNAi.org-the database of the Drosophila RNAi screening center and transgenic RNAi project: 2021 update.

    abstract::The FlyRNAi database at the Drosophila RNAi Screening Center and Transgenic RNAi Project (DRSC/TRiP) provides a suite of online resources that facilitate functional genomics studies with a special emphasis on Drosophila melanogaster. Currently, the database provides: gene-centric resources that facilitate ortholog map...

    journal_title:Nucleic acids research

    pub_type: 杂志文章

    doi:10.1093/nar/gkaa936

    authors: Hu Y,Comjean A,Rodiger J,Liu Y,Gao Y,Chung V,Zirin J,Perrimon N,Mohr SE

    更新日期:2021-01-08 00:00:00