Novel disulfide-constrained pentapeptides as models for beta-VIa turns in proteins.

Abstract:

:The conformational behavior of cyclic peptides of the amino acid sequence Cys-Phe/Ala-Pro-Ala-Cys has been investigated through the combined use of molecular simulation methods and NMR experiments to find models for beta-VIa turns of proteins. Both oxidized (cyclic) peptides and reduced (linear) forms were investigated. At least 95% of the cyclic peptides show a cis conformation of the Xaa-Pro bond in solution in DMSO or water, whereas all other peptide bonds are trans. Furthermore, we observed a hydrogen bond between the NH group of residue Ala4 and the C = O group of residue Cys1. Both properties are indicative of beta-VIa turns. After reduction of the disulfide bridge, the all-trans form of the peptide bonds predominates.

journal_name

FEBS Lett

journal_title

FEBS letters

authors

Weisshoff H,Frost K,Brandt W,Henklein P,Mügge C,Frömmel C

doi

10.1016/0014-5793(95)00982-f

subject

Has Abstract

pub_date

1995-09-25 00:00:00

pages

203-9

issue

2-3

eissn

0014-5793

issn

1873-3468

pii

0014-5793(95)00982-F

journal_volume

372

pub_type

杂志文章
  • The gonadotropin-releasing hormone family of neuropeptides in the brain of human, bovine and rat: identification of a third isoform.

    abstract::The mammalian gonadotropin-releasing hormone (GnRH-I), which regulates reproduction, was the first isoform of GnRH that was identified in mammals. Recently, we and others have demonstrated the existence of a second isoform of GnRH in the brain of mammals. The presence of a third isoform of GnRH, GnRH-III, in the brain...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(99)01638-5

    authors: Yahalom D,Chen A,Ben-Aroya N,Rahimipour S,Kaganovsky E,Okon E,Fridkin M,Koch Y

    更新日期:1999-12-17 00:00:00

  • Mitochondrial alterations induced by aspirin in rat hepatocytes expressing mitochondrially targeted green fluorescent protein (mtGFP).

    abstract::Mitochondria in primary living hepatocytes were visualized in cells transfected with a chimeric plasmid encoding for the green fluorescent protein (GFP) of Aequorea victoria engineered to be specifically targeted to mitochondria, as described recently (Rizutto et al. (1995) Curr. Biol. 5, 635-642). The identification ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00182-2

    authors: Venerando R,Miotto G,Pizzo P,Rizzuto R,Siliprandi N

    更新日期:1996-03-18 00:00:00

  • Interleukin-12 secreted by mature dendritic cells mediates activation of NK cell function.

    abstract::Dendritic cells (DCs) are known to modulate immune response by activating effector cells of both the innate and the adaptive immune system. In the present study, we demonstrate that co-culture of DCs with paraformaldehyde-fixed tumor cells augments the secretion of interleukin (IL)-12 by DCs and these activated DCs up...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/S0014-5793(04)00026-2

    authors: Alli RS,Khar A

    更新日期:2004-02-13 00:00:00

  • A type 2A protein phosphatase dephosphorylates the elongation factor 2 and is stimulated by the phorbol ester TPA in mouse epidermis in vivo.

    abstract::Mouse epidermal cytosol contains a protein phosphatase with Mr 38,000, which dephosphorylates the elongation factor 2 (EF-2) of protein biosynthesis and is stimulated after topical application of TPA to mouse skin [(1988) Biochem. Biophys. Res. Commun. 153, 1129-1135]. Dephosphorylation of EF-2 by this phosphatase is ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(89)81571-6

    authors: Gschwendt M,Kittstein W,Mieskes G,Marks F

    更新日期:1989-11-06 00:00:00

  • Vitronectin-dependent invasion of epithelial cells by Neisseria gonorrhoeae involves alpha(v) integrin receptors.

    abstract::Binding of vitronectin (VN) to Neisseria gonorrhoeae expressing the heparan sulfate proteoglycan (HSPG) specific Opa50 protein was recently shown to trigger bacterial internalization into distinct epithelial cell lines. We have investigated the role of VN-binding integrin receptors and protein kinase C (PKC) in VN-tri...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)00144-6

    authors: Dehio M,Gómez-Duarte OG,Dehio C,Meyer TF

    更新日期:1998-03-06 00:00:00

  • mRNA 5' ends targeted by cytoplasmic recapping cluster at CAGE tags and select transcripts are alternatively spliced.

    abstract::Until cytoplasmic recapping was discovered, decapping was thought to irreversibly destine an mRNA to degradation. Contradicting this idea, we readily observe mRNAs targeted by cytoplasmic capping in uncapped, yet stable forms. 5' rapid amplification of cDNA ends (RACE) shows that nearly all uncapped ends correspond to...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1002/1873-3468.13349

    authors: Berger MR,Alvarado R,Kiss DL

    更新日期:2019-04-01 00:00:00

  • Interaction of pro-apoptotic protein HGTD-P with heat shock protein 90 is required for induction of mitochondrial apoptotic cascades.

    abstract::HGTD-P is a hypoxia-responsive pro-apoptotic protein that transmits hypoxic signals directly to mitochondria. When overexpressed, HGTD-P induces cell death via typical mitochondrial apoptotic cascades. However, much is unknown about post-transcriptional modification and signaling networks of HGTD-P in association with...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2006.05.001

    authors: Kim JY,Kim SM,Ko JH,Yim JH,Park JH,Park JH

    更新日期:2006-05-29 00:00:00

  • Cloning and characterization of a novel receptor to pancreatic polypeptide, a member of the neuropeptide Y receptor family.

    abstract::We report isolation of a murine gene, NPYR-D, which predicts an intronless novel G protein-coupled receptor of 375 amino acids. Percent identities of NPYR-D to the clone Y1, Y2, rat Y4/PP1 and human Y4/PP1 receptors are 45, 32, 92 and 76, respectively. Southern blots indicate that NPYR-D and human Y4/PP1 receptor gene...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00067-1

    authors: Gregor P,Millham ML,Feng Y,DeCarr LB,McCaleb ML,Cornfield LJ

    更新日期:1996-02-26 00:00:00

  • IgG immunoglobulins induce activation of the sphingomyelin cycle in HL-60 cells.

    abstract::In HL-60 cells signal transduction via sphingomyelin hydrolysis (sphingomyelin cycle) is induced by binding of tumor necrosis factor alpha (TNFalpha) to cell surface TNFalpha receptor. We found that IgG immunoglobulins activate sphingomyelin hydrolysis in plasma membrane of HL-60 cells, with kinetics similar to that o...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00958-1

    authors: Glick D,Barenholz Y

    更新日期:1996-10-07 00:00:00

  • The heme auxotroph Caenorhabditis elegans can cleave the thioether bonds of c-type cytochromes.

    abstract::Heme is essential and synthesized via highly regulated processes. For this reason, most organisms strive to recycle it or acquire it from their environment. When heme is bound to proteins noncovalently, degradation of the polypeptide is sufficient to release it. However, in some hemoproteins, such as c-type cytochrome...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.13006

    authors: Murphey AC,Mavridou DAI,Hodgkin J,Ferguson SJ

    更新日期:2018-03-01 00:00:00

  • Changes in expression of C2cd4c in pancreatic endocrine cells during pancreatic development.

    abstract::C2cd4c, encoded by a gene belonging to the C2cd4 family, contains a C2 domain conserved across species and is localized to the cytoplasm. To examine the role of C2cd4c in the pancreas, we studied its localization and generated C2cd4c knockout (KO) mice. C2cd4c was expressed in pancreatic endocrine progenitors at early...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12271

    authors: Omori H,Ogaki S,Sakano D,Sato M,Umeda K,Takeda N,Nakagata N,Kume S

    更新日期:2016-08-01 00:00:00

  • Hyaluronate depolymerization activity induced by progesterone in cultured fibroblasts derived from human uterine cervix.

    abstract::High-molecular-weight [14C]hyaluronate was incubated with cultured fibroblasts from human uterine cervix and skin, and then the depolymerization of the hyaluronate was investigated. [14C]Hyaluronate in the medium of skin fibroblasts was depolymerized into a constant molecular weight (M(r) about 40,000), whereas that o...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)00517-6

    authors: Tanaka K,Nakamura T,Ikeya H,Higuchi T,Tanaka A,Morikawa A,Saito Y,Takagaki K,Endo M

    更新日期:1994-06-20 00:00:00

  • A unique mRNA species for a regulatory subunit of cAMP-dependent protein kinase is specifically induced in haploid germ cells.

    abstract::Cyclic AMP (cAMP) and its action by way of cAMP-dependent protein kinase is important for sperm motility. Previous studies on germ cells have demonstrated a selective decrease in the amount of type I cAMP-dependent protein kinase during spermatid development, and that type II was the major form present in elongating s...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(88)81163-3

    authors: Oyen O,Scott JD,Cadd GG,McKnight GS,Krebs EG,Hansson V,Jahnsen T

    更新日期:1988-03-14 00:00:00

  • The transmembrane topology of Batten disease protein CLN3 determined by consensus computational prediction constrained by experimental data.

    abstract::The CLN3 gene encodes an integral membrane protein of unknown function. Mutations in CLN3 can cause juvenile neuronal ceroid lipofuscinosis, or Batten disease, an inherited neurodegenerative lysosomal storage disease affecting children. Here, we report a topological study of the CLN3 protein using bioinformatic approa...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2008.02.049

    authors: Nugent T,Mole SE,Jones DT

    更新日期:2008-04-02 00:00:00

  • Large-scale purification of ribosome-nascent chain complexes for biochemical and structural studies.

    abstract::Here we present a method to purify large amounts of highly pure and stably arrested ribosome-nascent chain complexes (RNCs) from Escherichia coli cells. It relies on the combined use of translation-arrest sequences to generate nascent polypeptides of specified length and subsequent tag purification of the RNCs. Moreov...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2009.06.041

    authors: Rutkowska A,Beerbaum M,Rajagopalan N,Fiaux J,Schmieder P,Kramer G,Oschkinat H,Bukau B

    更新日期:2009-07-21 00:00:00

  • Epithelial CaSR deficiency alters intestinal integrity and promotes proinflammatory immune responses.

    abstract::The intestinal epithelium is equipped with sensing receptor mechanisms that interact with luminal microorganisms and nutrients to regulate barrier function and gut immune responses, thereby maintaining intestinal homeostasis. Herein, we clarify the role of the extracellular calcium-sensing receptor (CaSR) using intest...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2014.05.007

    authors: Cheng SX,Lightfoot YL,Yang T,Zadeh M,Tang L,Sahay B,Wang GP,Owen JL,Mohamadzadeh M

    更新日期:2014-11-17 00:00:00

  • A new opioid peptide predicted from cloned cDNAs from skin of Pachymedusa dacnicolor and Agalychnis annae.

    abstract::We have isolated a cDNA encoding a precursor of dermorphin from the skin of Pachymedusa dacnicolor. Besides four copies of this opioid peptide, the deduced sequence also contains the genetic information for a novel peptide Tyr-Ile-Phe-His-Leu-Met-Asp-NH2. This differs from Met-deltorphin by the presence of Ile at posi...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)00545-6

    authors: Wechselberger C,Severini C,Kreil G,Negri L

    更新日期:1998-06-05 00:00:00

  • A novel leptin receptor isoform in rat.

    abstract::Five mouse and human leptin receptors (Ob-R) have recently been identified, a long isoform (Ob-Rb), preferentially expressed in hypothalamus, and 4 short isoforms, Ob-Ra, Ob-Rc, Ob-Rd, and Ob-Re. We have identified a new short isoform in the rat, r-OB-Rf, with 6 C-terminal amino acids and a 3' untranslated region with...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00790-9

    authors: Wang MY,Zhou YT,Newgard CB,Unger RH

    更新日期:1996-08-26 00:00:00

  • Export of Thermus thermophilus alkaline phosphatase via the twin-arginine translocation pathway in Escherichia coli.

    abstract::The bacterial twin-arginine translocation (Tat) pathway is distinct from the Sec system by its remarkable capacity to export folded enzymes. To address the question whether the two systems are capable of translocating homologous enzymes catalyzing the same reaction, we cloned the tap gene encoding Thermus thermophilus...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(01)02890-3

    authors: Angelini S,Moreno R,Gouffi K,Santini C,Yamagishi A,Berenguer J,Wu L

    更新日期:2001-10-05 00:00:00

  • Mrg19 depletion increases S. cerevisiae lifespan by augmenting ROS defence.

    abstract::Caloric restriction (CR) is the most compelling example of lifespan extension by external manipulation. Although the molecular mechanisms remain unknown, the theory of hormesis has been invoked to explain the life promoting effects of CR. Hormesis is defined as the beneficial effects of low intensity stressor on a cel...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2005.11.017

    authors: Kharade SV,Mittal N,Das SP,Sinha P,Roy N

    更新日期:2005-12-19 00:00:00

  • The formation of products containing a conjugated tetraenoic system by pure reticulocyte lipoxygenase.

    abstract::The pure lipoxygenase from reticulocytes converts 5,15-di-HETE at 2 degrees C to product(s) showing a characteristic UV spectrum with maxima of strong absorbance at 300 and 316 nm and shoulders at 285 and 350 nm. Their formation was completely prevented by the lipoxygenase inhibitors, ETYA and NDGA, by heating of the ...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(84)81294-6

    authors: Kühn H,Wiesner R,Stender H

    更新日期:1984-11-19 00:00:00

  • Expression of c-fos gene inhibits proteoglycan synthesis in transfected chondrocyte.

    abstract::The effect of expression of c-fos gene on proteoglycan synthesis, one of the important markers of cartilage metabolism, was examined by introducing the c-fos DNA into HCS 2/8 chondrocytes. The [35S]sulfate incorporation into proteoglycan was decreased in the c-fos transfectants expressing exogenous c-fos mRNA, when co...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(96)00118-4

    authors: Tsuji M,Funahashi S,Takigawa M,Seiki M,Fujii K,Yoshida T

    更新日期:1996-03-04 00:00:00

  • The 'assembly-promoting sequence region' of microtubule-associated protein 4 failed to promote microtubule assembly.

    abstract::In order to study the function of the bovine MAP4 microtubule-binding domain (the assembly-promoting (AP) sequence region), a fragment corresponding to the AP sequence region was prepared using an Escherichia coli expression system. When the fragment was mixed with purified tubulin at 37 degrees C, the fragment caused...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(97)01342-2

    authors: Katsuki M,Tokuraku K,Nakagawa H,Murofushi H,Kotani S

    更新日期:1997-11-24 00:00:00

  • AID recruits the RNA exosome to degrade HIV-1 nascent transcripts through interaction with the Tat-P-TEFb-TAR RNP complex.

    abstract::Activation-induced cytidine deaminase (AID), a member of the APOBEC family that induces antibody diversification, has been shown to inhibit the replication of hepatitis B virus, Kaposi's sarcoma-associated herpesvirus, and retro-transposons. However, whether AID can inhibit human immunodeficiency virus 1 (HIV-1) repli...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12954

    authors: Wang R,Zhang X,Ding H,Qiao Y,Han X,Geng W,Guan G,Cui H,Zhao B,Wu Y,Liang G,Shang H

    更新日期:2018-01-01 00:00:00

  • Proteolytic cleavage of HsRad51 during apoptosis.

    abstract::The Rad51 gene of Saccharomyces cerevisiae is required for genetic recombination and recombinational repair of DNA strand breaks. In higher eukaryotes Rad51 is essential for embryonic development, and is involved in cell proliferation and DNA repair. Here we show that human Rad51 (HsRad51) is proteolytically cleaved d...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(98)00433-5

    authors: Flygare J,Armstrong RC,Wennborg A,Orsan S,Hellgren D

    更新日期:1998-05-08 00:00:00

  • Copper in the silk formation process of Bombyx mori silkworm.

    abstract::Evidence is presented here that cupric ions play a part in the natural spinning of Bombyx mori silk. Proton induced X-ray emission studies revealed that the copper content increased from the posterior part to the anterior part of silk gland, and then further increased in the silk fiber. Spectrophotometric analysis dem...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/s0014-5793(03)01184-0

    authors: Zhou L,Chen X,Shao Z,Zhou P,Knight DP,Vollrath F

    更新日期:2003-11-20 00:00:00

  • miR-1273g-3p modulates activation and apoptosis of hepatic stellate cells by directly targeting PTEN in HCV-related liver fibrosis.

    abstract::MicroRNA (miRNA) play a pivotal role in the development of liver fibrosis. However, the functions of miRNA in hepatitis C virus (HCV)-related liver fibrosis remain unclear. In this study, we systematically analyzed the microarray data of the serum miRNA in patients with HCV-induced hepatic fibrosis. Among 41 dysregula...

    journal_title:FEBS letters

    pub_type: 信件

    doi:10.1002/1873-3468.12309

    authors: Niu X,Fu N,Du J,Wang R,Wang Y,Zhao S,Du H,Wang B,Zhang Y,Sun D,Nan Y

    更新日期:2016-08-01 00:00:00

  • TP63 and TP73 in cancer, an unresolved "family" puzzle of complexity, redundancy and hierarchy.

    abstract::TP53 belongs to a small gene family that includes, in mammals, two additional paralogs, TP63 and TP73. The p63 and p73 proteins are structurally and functionally similar to p53 and their activity as transcription factors is regulated by a wide repertoire of shared and unique post-translational modifications and intera...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2014.06.047

    authors: Costanzo A,Pediconi N,Narcisi A,Guerrieri F,Belloni L,Fausti F,Botti E,Levrero M

    更新日期:2014-08-19 00:00:00

  • Crystal structure of a soluble decoy receptor IL-22BP bound to interleukin-22.

    abstract::Interleukin-22 (IL-22) plays an important role in the regulation of immune and inflammatory responses in mammals. The IL-22 binding protein (IL-22BP), a soluble receptor that specifically binds IL-22, prevents the IL-22/interleukin-22 receptor 1 (IL-22R1)/interleukin-10 receptor 2 (IL-10R2) complex assembly and blocks...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/j.febslet.2009.03.006

    authors: de Moura PR,Watanabe L,Bleicher L,Colau D,Dumoutier L,Lemaire MM,Renauld JC,Polikarpov I

    更新日期:2009-04-02 00:00:00

  • Identification of metabolic pathways of the lipid peroxidation product 4-hydroxynonenal by mitochondria isolated from rat kidney cortex.

    abstract::The cytosolic lipid peroxidation product 4-hydroxynonenal (HNE) is rapidly metabolized in mitochondria isolated from rat kidney cortex. About 80% of HNE was degraded within 3 min of incubation. Main products of HNE which were identified in mitochondria were the hydroxynonenoic acid, the 1,4-dihydroxynonene and the glu...

    journal_title:FEBS letters

    pub_type: 杂志文章

    doi:10.1016/0014-5793(94)00922-8

    authors: Ullrich O,Grune T,Henke W,Esterbauer H,Siems WG

    更新日期:1994-09-19 00:00:00