Studies of transfer RNA tertiary structure by singlet-singlet energy transfer.

Abstract:

:This distance between a base next to the anticodon of tRNA and the 3' CpCpA terminus of the molecule has been estimated by singlet-singlet energy transfer experiments. The energy donor was the Y base of unknown structure found in yeast tRNA(phe). Three different energy acceptors were used: acriflavine, proflavinyl acetic acid hydrazide, and 9-hydrazino acridine. These were attached to the periodate-oxidized 3' end of the tRNA. R(0)'s between 24 and 30 A were calculated for the three chromophore couples by assuming that the relative orientation of donor and acceptor is random. This assumption is supported by the consistency of the experimental results with all three acceptors and by studies of the fluorescence depolarization of Y. The energy transfer observed both by quenching of Y and enhanced activation of the acceptors is quite small, indicating that the anticodon is more than 40 A away from the amino acid accepting terminus. This places severe restrictions on the type of tertiary structure possible for tRNA.

authors

Beardsley K,Cantor CR

doi

10.1073/pnas.65.1.39

subject

Has Abstract

pub_date

1970-01-01 00:00:00

pages

39-46

issue

1

eissn

0027-8424

issn

1091-6490

journal_volume

65

pub_type

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