Isolation of circular DNA molecules from whole cellular DNA by use of ATP-dependent deoxyribonuclease.

Abstract:

:A technique is described for isolation of plasmid DNA in closed and open circular double-stranded forms from bacterial cells, by use of ATP-dependent deoxyribonuclease purified from Micrococcus luteus. This DNase, acting only upon linear DNA molecules, degrades all bacterial chromosomal DNA extracted in the linear form. Circular plasmid DNAs are left intact, and are then separated by sedimentation through a sucrose gradient. Unlike previous techniques for analysis of plasmid DNA, this technique can be used to isolate not only closed circular DNA but also open circular DNA. Several plasmids, such as those from phage (lambdadv1 and lambdadv21), a colicinogenic factor (Col E2), a sex factor (F(8)' gal), and "minicircles" in Escherichia coli 15, in both the open and closed circular forms, were well separated from chromosomal DNA by this technique.

authors

Mukai T,Matsubara K,Takagi Y

doi

10.1073/pnas.70.10.2884

subject

Has Abstract

pub_date

1973-10-01 00:00:00

pages

2884-7

issue

10

eissn

0027-8424

issn

1091-6490

journal_volume

70

pub_type

杂志文章
  • Plant neighbor detection through touching leaf tips precedes phytochrome signals.

    abstract::Plants in dense vegetation compete for resources, including light, and optimize their growth based on neighbor detection cues. The best studied of such behaviors is the shade-avoidance syndrome that positions leaves in optimally lit zones of a vegetation. Although proximate vegetation is known to be sensed through a r...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1205437109

    authors: de Wit M,Kegge W,Evers JB,Vergeer-van Eijk MH,Gankema P,Voesenek LA,Pierik R

    更新日期:2012-09-04 00:00:00

  • The Trojan exosome hypothesis.

    abstract::We propose that retroviruses exploit a cell-encoded pathway of intercellular vesicle traffic, exosome exchange, for both the biogenesis of retroviral particles and a low-efficiency but mechanistically important mode of infection. This Trojan exosome hypothesis reconciles current paradigms of retrovirus-directed transm...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1831413100

    authors: Gould SJ,Booth AM,Hildreth JE

    更新日期:2003-09-16 00:00:00

  • Generation of dopaminergic neurons and pigmented epithelia from primate ES cells by stromal cell-derived inducing activity.

    abstract::We previously identified a stromal cell-derived inducing activity (SDIA), which induces differentiation of neural cells, including midbrain tyrosine hydroxylase-positive (TH(+)) dopaminergic neurons, from mouse embryonic stem cells. We report here that SDIA induces efficient neural differentiation also in primate embr...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.032662199

    authors: Kawasaki H,Suemori H,Mizuseki K,Watanabe K,Urano F,Ichinose H,Haruta M,Takahashi M,Yoshikawa K,Nishikawa S,Nakatsuji N,Sasai Y

    更新日期:2002-02-05 00:00:00

  • A PERIOD3 variant causes a circadian phenotype and is associated with a seasonal mood trait.

    abstract::In humans, the connection between sleep and mood has long been recognized, although direct molecular evidence is lacking. We identified two rare variants in the circadian clock gene PERIOD3 (PER3-P415A/H417R) in humans with familial advanced sleep phase accompanied by higher Beck Depression Inventory and seasonality s...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1600039113

    authors: Zhang L,Hirano A,Hsu PK,Jones CR,Sakai N,Okuro M,McMahon T,Yamazaki M,Xu Y,Saigoh N,Saigoh K,Lin ST,Kaasik K,Nishino S,Ptáček LJ,Fu YH

    更新日期:2016-03-15 00:00:00

  • Localization of non-Mhc collagen-induced arthritis susceptibility loci in DBA/1j mice.

    abstract::One approach to understanding common human diseases is to determine the genetic defects responsible for similar diseases in animal models and place those defective genes in their corresponding biochemical pathways. Our laboratory is working with an animal model for human rheumatoid arthritis called collagen-induced ar...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.5.2210

    authors: McIndoe RA,Bohlman B,Chi E,Schuster E,Lindhardt M,Hood L

    更新日期:1999-03-02 00:00:00

  • The deep, hot biosphere: Twenty-five years of retrospection.

    abstract::Twenty-five years ago this month, Thomas Gold published a seminal manuscript suggesting the presence of a "deep, hot biosphere" in the Earth's crust. Since this publication, a considerable amount of attention has been given to the study of deep biospheres, their role in geochemical cycles, and their potential to infor...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1701266114

    authors: Colman DR,Poudel S,Stamps BW,Boyd ES,Spear JR

    更新日期:2017-07-03 00:00:00

  • Functional MRI of the zebra finch brain during song stimulation suggests a lateralized response topography.

    abstract::Electrophysiological and activity-dependent gene expression studies of birdsong have contributed to the understanding of the neural representation of natural sounds. However, we have limited knowledge about the overall spatial topography of song representation in the avian brain. Here, we adapt the noninvasive functio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0611515104

    authors: Voss HU,Tabelow K,Polzehl J,Tchernichovski O,Maul KK,Salgado-Commissariat D,Ballon D,Helekar SA

    更新日期:2007-06-19 00:00:00

  • Reach and speed of judgment propagation in the laboratory.

    abstract::In recent years, a large body of research has demonstrated that judgments and behaviors can propagate from person to person. Phenomena as diverse as political mobilization, health practices, altruism, and emotional states exhibit similar dynamics of social contagion. The precise mechanisms of judgment propagation are ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1611998114

    authors: Moussaïd M,Herzog SM,Kämmer JE,Hertwig R

    更新日期:2017-04-18 00:00:00

  • Compound facial expressions of emotion.

    abstract::Understanding the different categories of facial expressions of emotion regularly used by us is essential to gain insights into human cognition and affect as well as for the design of computational models and perceptual interfaces. Past research on facial expressions of emotion has focused on the study of six basic ca...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1322355111

    authors: Du S,Tao Y,Martinez AM

    更新日期:2014-04-15 00:00:00

  • Coherent phonon dynamics in spatially separated graphene mechanical resonators.

    abstract::Vibrational modes in mechanical resonators provide a promising candidate to interface and manipulate classical and quantum information. The observation of coherent dynamics between distant mechanical resonators can be a key step toward scalable phonon-based applications. Here we report tunable coherent phonon dynamics...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1916978117

    authors: Zhang ZZ,Song XX,Luo G,Su ZJ,Wang KL,Cao G,Li HO,Xiao M,Guo GC,Tian L,Deng GW,Guo GP

    更新日期:2020-03-17 00:00:00

  • Dependence of the rates of dissolution of the Fe4S4 clusters of Chromatium vinosum high-potential iron protein and ferredoxin on cluster oxidation state.

    abstract::The influence of oxidation state on the pH dependence of the dissolution of the Fe(4)S(4) clusters of Chromatium vinosum ferredoxin and high-potential iron protein (HIPIP) has been studied. The first-order rate constants (k(obs)) for dissolution of both the Fe(4)S(4)(S-Cys)(4) (2-) and Fe(4)S(4)(S-Cys)(4) (3-) cluster...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.12.5231

    authors: Maskiewicz R,Bruice TC

    更新日期:1977-12-01 00:00:00

  • MDMX contains an autoinhibitory sequence element.

    abstract::MDM2 and MDMX are homologous proteins that bind to p53 and regulate its activity. Both contain three folded domains and ~70% intrinsically disordered regions. Previous detailed structural and biophysical studies have concentrated on the isolated folded domains. The N-terminal domains of both exhibit high affinity for ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1317398110

    authors: Bista M,Petrovich M,Fersht AR

    更新日期:2013-10-29 00:00:00

  • Intestinal permeability, gut-bacterial dysbiosis, and behavioral markers of alcohol-dependence severity.

    abstract::Alcohol dependence has traditionally been considered a brain disorder. Alteration in the composition of the gut microbiota has recently been shown to be present in psychiatric disorders, which suggests the possibility of gut-to-brain interactions in the development of alcohol dependence. The aim of the present study w...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1415174111

    authors: Leclercq S,Matamoros S,Cani PD,Neyrinck AM,Jamar F,Stärkel P,Windey K,Tremaroli V,Bäckhed F,Verbeke K,de Timary P,Delzenne NM

    更新日期:2014-10-21 00:00:00

  • Immunological defect and its correction in the osteopetrotic mutant rat.

    abstract::Congenital osteopetrosis in the mutant rat "op" is accompanied by early atrophy of the thymus gland. The response of thymocytes to concanavalin A and phytohemagglutinin P was greatly diminished at age 28 days, even before pronounced thymic atrophy could be detected. The response of spleen cells to mitogens that stimul...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.1.339

    authors: Milhaud G,Labat ML,Parant M,Damais C,Chedid L

    更新日期:1977-01-01 00:00:00

  • A vertebrate myosin-I structure reveals unique insights into myosin mechanochemical tuning.

    abstract::Myosins are molecular motors that power diverse cellular processes, such as rapid organelle transport, muscle contraction, and tension-sensitive anchoring. The structural adaptations in the motor that allow for this functional diversity are not known, due, in part, to the lack of high-resolution structures of highly t...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1321022111

    authors: Shuman H,Greenberg MJ,Zwolak A,Lin T,Sindelar CV,Dominguez R,Ostap EM

    更新日期:2014-02-11 00:00:00

  • Folding pathways of proteins with increasing degree of sequence identities but different structure and function.

    abstract::Much experimental work has been devoted in comparing the folding behavior of proteins sharing the same fold but different sequence. The recent design of proteins displaying very high sequence identities but different 3D structure allows the unique opportunity to address the protein-folding problem from a complementary...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1201794109

    authors: Giri R,Morrone A,Travaglini-Allocatelli C,Jemth P,Brunori M,Gianni S

    更新日期:2012-10-30 00:00:00

  • Genomic imprinting effects on adult body composition in mice.

    abstract::Genomic imprinting results in the differential expression of genes, depending on which allele is inherited from the mother and which from the father. The effects of such differential gene expression are reflected in phenotypic differences between the reciprocal heterozygotes (Aa vs. aA). Although many imprinted genes ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0706562105

    authors: Cheverud JM,Hager R,Roseman C,Fawcett G,Wang B,Wolf JB

    更新日期:2008-03-18 00:00:00

  • Direct high-resolution mapping of electrocatalytic activity of semi-two-dimensional catalysts with single-edge sensitivity.

    abstract::The catalytic activity of low-dimensional electrocatalysts is highly dependent on their local atomic structures, particularly those less-coordinated sites found at edges and corners; therefore, a direct probe of the electrocatalytic current at specified local sites with true nanoscopic resolution has become critically...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1821091116

    authors: Sun T,Wang D,Mirkin MV,Cheng H,Zheng JC,Richards RM,Lin F,Xin HL

    更新日期:2019-06-11 00:00:00

  • Multidimensional spectroscopy of photoreactivity.

    abstract::Coherent multidimensional electronic spectroscopy is commonly used to investigate photophysical phenomena such as light harvesting in photosynthesis in which the system returns back to its ground state after energy transfer. By contrast, we introduce multidimensional spectroscopy to study ultrafast photochemical proce...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1323792111

    authors: Ruetzel S,Diekmann M,Nuernberger P,Walter C,Engels B,Brixner T

    更新日期:2014-04-01 00:00:00

  • Autogenous control of the S10 ribosomal protein operon of Escherichia coli: genetic dissection of transcriptional and posttranscriptional regulation.

    abstract::The S10 ribosomal protein operon is regulated autogenously by the product of one of the genes of the operon, the gene encoding ribosomal protein L4. We have used site-directed mutagenesis to isolate leader mutations affecting L4 control. The phenotypes of these mutants demonstrate that L4 regulates both transcription ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.18.6516

    authors: Freedman LP,Zengel JM,Archer RH,Lindahl L

    更新日期:1987-09-01 00:00:00

  • Expression of a complete soybean leghemoglobin gene in root nodules of transgenic Lotus corniculatus.

    abstract::The complete soybean leghemoglobin lbc(3) gene was transferred into the legume Lotus corniculatus using an Agrobacterium rhizogenes vector system. Organ-specific expression of the soybean gene was observed in root nodules formed on regenerated transgenic plants after infection with Rhizobium loti. The primary transcri...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.84.16.5754

    authors: Stougaard J,Petersen TE,Marcker KA

    更新日期:1987-08-01 00:00:00

  • Equity and length of lifespan are not the same.

    abstract::Efforts to understand the dramatic declines in mortality over the past century have focused on life expectancy. However, understanding changes in disparity in age of death is important to understanding mechanisms of mortality improvement and devising policy to promote health equity. We derive a novel decomposition of ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1601112113

    authors: Seligman B,Greenberg G,Tuljapurkar S

    更新日期:2016-07-26 00:00:00

  • Lithogenic hydrogen supports microbial primary production in subglacial and proglacial environments.

    abstract::Life in environments devoid of photosynthesis, such as on early Earth or in contemporary dark subsurface ecosystems, is supported by chemical energy. How, when, and where chemical nutrients released from the geosphere fuel chemosynthetic biospheres is fundamental to understanding the distribution and diversity of life...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2007051117

    authors: Dunham EC,Dore JE,Skidmore ML,Roden EE,Boyd ES

    更新日期:2021-01-12 00:00:00

  • Coexpression of factor VIII heavy and light chain adeno-associated viral vectors produces biologically active protein.

    abstract::We are interested in using recombinant adeno-associated viral vectors in the treatment of hemophilia A. Because of the size constraints of recombinant adeno-associated viral vectors, we delivered the heavy and light chains of the human factor 8 (hFVIII) cDNA independently by using two separate vectors. Recombinant AAV...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.22.12725

    authors: Burton M,Nakai H,Colosi P,Cunningham J,Mitchell R,Couto L

    更新日期:1999-10-26 00:00:00

  • Disruption of the Lcn2 gene in mice suppresses primary mammary tumor formation but does not decrease lung metastasis.

    abstract::Based largely on studies in xenograft models, lipocalin-2 (Lcn2) has been implicated in the progression of multiple types of human tumors, including breast cancer. Here we examine the role of Lcn2 in mammary tumorigenesis and lung metastasis using an in vivo molecular genetics approach. We crossed a well-characterized...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1000101107

    authors: Berger T,Cheung CC,Elia AJ,Mak TW

    更新日期:2010-02-16 00:00:00

  • Nicking-closing enzyme assembles nucleosome-like structures in vitro.

    abstract::The four core histones (H2A, H2B, H3, and H4) and DNA were assembled into nucleosome-like particles at physiological ionic strengths either by an extract of chromatin rich in nicking-closing activity or by the purified nicking-closing enzyme itself. When histone-DNA complexes were assembled in vitro from relaxed circu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.76.8.3779

    authors: Germond JE,Rouvière-Yaniv J,Yaniv M,Brutlag D

    更新日期:1979-08-01 00:00:00

  • Accelerated wound healing in mice by on-site production and delivery of CXCL12 by transformed lactic acid bacteria.

    abstract::Impaired wound closure is a growing medical problem associated with metabolic diseases and aging. Immune cells play important roles in wound healing by following instructions from the microenvironment. Here, we developed a technology to bioengineer the wound microenvironment and enhance healing abilities of the immune...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1716580115

    authors: Vågesjö E,Öhnstedt E,Mortier A,Lofton H,Huss F,Proost P,Roos S,Phillipson M

    更新日期:2018-02-20 00:00:00

  • Phytochrome regulates translation of mRNA in the cytosol.

    abstract::An array of photoreceptors including cryptochromes, phototropin, and phytochromes regulates various light responses in plants. Among these photoreceptors, phytochromes perceive red and far-red light by switching between two interconvertible spectral forms (Pr and Pfr). The Pfr form promotes light responses partly by d...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1109683109

    authors: Paik I,Yang S,Choi G

    更新日期:2012-01-24 00:00:00

  • Mycosporine-like amino acids are multifunctional molecules in sea hares and their marine community.

    abstract::Molecules of keystone significance are relatively rare, yet mediate a variety of interactions between organisms. They influence the distribution and abundance of species, the transfer of energy across multiple trophic levels, and thus they play significant roles in structuring ecosystems. Despite their potential impor...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1103906108

    authors: Kicklighter CE,Kamio M,Nguyen L,Germann MW,Derby CD

    更新日期:2011-07-12 00:00:00

  • Ferredoxin:NADPH oxidoreductase is recruited to thylakoids by binding to a polyproline type II helix in a pH-dependent manner.

    abstract::Ferredoxin:NADPH oxidoreductase (FNR) is a key enzyme of photosynthetic electron transport required for generation of reduction equivalents. Recently, two proteins were found to be involved in membrane-anchoring of FNR by specific interaction via a conserved Ser/Pro-rich motif: Tic62 and Trol. Our crystallographic stu...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1009124107

    authors: Alte F,Stengel A,Benz JP,Petersen E,Soll J,Groll M,Bölter B

    更新日期:2010-11-09 00:00:00