Translational control of enzyme scavenger expression with toxin-induced micro RNA switches.

Abstract:

:Biological computation requires in vivo control of molecular behavior to progress development of autonomous devices. miRNA switches represent excellent, easily engineerable synthetic biology tools to achieve user-defined gene regulation. Here we present the construction of a synthetic network to implement detoxification functionality. We employed a modular design strategy by engineering toxin-induced control of an enzyme scavenger. Our miRNA switch results show moderate synthetic expression control over a biologically active detoxification enzyme molecule, using an established design protocol. However, following a new design approach, we demonstrated an evolutionarily designed miRNA switch to more effectively activate enzyme activity than synthetically designed versions, allowing markedly improved extrinsic user-defined control with a toxin as inducer. Our straightforward new design approach is simple to implement and uses easily accessible web-based databases and prediction tools. The ability to exert control of toxicity demonstrates potential for modular detoxification systems that provide a pathway to new therapeutic and biocomputing applications.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Pollak NM,Cooper-White JJ,Macdonald J

doi

10.1038/s41598-021-81679-6

subject

Has Abstract

pub_date

2021-01-28 00:00:00

pages

2462

issue

1

issn

2045-2322

pii

10.1038/s41598-021-81679-6

journal_volume

11

pub_type

杂志文章
  • De novo draft assembly of the Botrylloides leachii genome provides further insight into tunicate evolution.

    abstract::Tunicates are marine invertebrates that compose the closest phylogenetic group to the vertebrates. These chordates present a particularly diverse range of regenerative abilities and life-history strategies. Consequently, tunicates provide an extraordinary perspective into the emergence and diversity of these traits. H...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23749-w

    authors: Blanchoud S,Rutherford K,Zondag L,Gemmell NJ,Wilson MJ

    更新日期:2018-04-03 00:00:00

  • Thymus algeriensis and Thymus fontanesii exert neuroprotective effect against chronic constriction injury-induced neuropathic pain in rats.

    abstract::We have previously demonstrated that the Thymus algeriensis and Thymus fontanesii extracts have powerful anti-inflammatory, antipyretic, and analgesic effects against acute pain models. We profiled their chemical composition and found many phenolic acids, flavonoids, and phenolic diterpenes. In this work, we investiga...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77424-0

    authors: Rezq S,Alsemeh AE,D'Elia L,El-Shazly AM,Monti DM,Sobeh M,Mahmoud MF

    更新日期:2020-11-25 00:00:00

  • Transarterial chemoembolization with medium-sized doxorubicin-eluting Callisphere is safe and effective for patients with hepatocellular carcinoma.

    abstract::The study aimed to compare the tumor response to and complications of doxorubicin-eluting CalliSphere bead-transarterial chemoembolization (DEB-TACE) using small- and medium-sized beads in patients with hepatocellular carcinoma (HCC) who underwent multiple rounds of oncology therapies. Sixty patients with intermediate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61209-6

    authors: Wang CY,Xia JG,Yang ZQ,Zhou WZ,Chen WH,Qi CJ,Gu JP,Wang Q

    更新日期:2020-03-10 00:00:00

  • Effect of acute physical exercise on motor sequence memory.

    abstract::Acute physical exercise improves memory functions by increasing neural plasticity in the hippocampus. In animals, a single session of physical exercise has been shown to boost anandamide (AEA), an endocannabinoid known to promote hippocampal plasticity. Hippocampal neuronal networks encode episodic memory representati...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-72108-1

    authors: Marin Bosch B,Bringard A,Logrieco MG,Lauer E,Imobersteg N,Thomas A,Ferretti G,Schwartz S,Igloi K

    更新日期:2020-09-18 00:00:00

  • Enhanced Electrocatalytic Stability of Platinum Nanoparticles Supported on Sulfur-Doped Carbon using in-situ Solution Plasma.

    abstract::The metal-air battery is a form of renewable energy generation technology that produces energy electrochemically and can address energy concerns in the near future. However, state-of-the-art Pt electrocatalysts often suffer from agglomeration or detachment from carbon supports under prolonged operation, eventually lim...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49194-x

    authors: Li OL,Shi Z,Lee H,Ishizaki T

    更新日期:2019-09-03 00:00:00

  • Visuomotor Prediction Errors Modulate EEG Activity Over Parietal Cortex.

    abstract::The parietal cortex is thought to be involved in visuomotor adaptation, yet it remains unclear whether it is specifically modulated by visuomotor prediction errors (i.e. PEs; mismatch between the predicted and actual visual consequences of the movement). One reason for this is that PEs tend to be associated with task ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30609-0

    authors: Savoie FA,Thénault F,Whittingstall K,Bernier PM

    更新日期:2018-08-21 00:00:00

  • Dynamic scaling for the growth of non-equilibrium fluctuations during thermophoretic diffusion in microgravity.

    abstract::Diffusion processes are widespread in biological and chemical systems, where they play a fundamental role in the exchange of substances at the cellular level and in determining the rate of chemical reactions. Recently, the classical picture that portrays diffusion as random uncorrelated motion of molecules has been re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14486

    authors: Cerbino R,Sun Y,Donev A,Vailati A

    更新日期:2015-09-30 00:00:00

  • Autofluorescence is a Reliable in vitro Marker of Cellular Senescence in Human Mesenchymal Stromal Cells.

    abstract::Mesenchymal stromal cells (MSC) are used in cell therapies, however cellular senescence increases heterogeneity of cell populations and leads to uncertainty in therapies' outcomes. The determination of cellular senescence is time consuming and logistically intensive. Here, we propose the use of endogenous autofluoresc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38546-2

    authors: Bertolo A,Baur M,Guerrero J,Pötzel T,Stoyanov J

    更新日期:2019-02-14 00:00:00

  • Development of a comprehensive set of tools for genome engineering in a cold- and thermo-tolerant Kluyveromyces marxianus yeast strain.

    abstract::Kluyveromyces marxianus, a non-conventional thermotolerant yeast, is potentially useful for production of ethanol and other products. This species has a strong tendency to randomly integrate transforming DNA fragments, making necessary the development of more precise methods for gene targeting. In this study, we first...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08356-5

    authors: Nambu-Nishida Y,Nishida K,Hasunuma T,Kondo A

    更新日期:2017-08-21 00:00:00

  • Magnetic properties of six-legged spin-1 nanotube in presence of a longitudinal applied field.

    abstract::In this paper, we investigate the magnetic behavior of a single-walled hexagonal spin-1 Ising nanotube by using the effective field theory (EFT) with correlations and the differential operator technique (DOT). The system consists of six long legs distributed parallel to each other on a hexagonal basis. Within each cha...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48833-7

    authors: ElMaddahi Z,El Hafidi MY,El Hafidi M

    更新日期:2019-08-26 00:00:00

  • The Analysis of the Influence of Odorant's Complexity on Fractal Dynamics of Human Respiration.

    abstract::One of the major challenges in olfaction research is to relate the structural features of the odorants to different features of olfactory system. However, no relationship has been yet discovered between the structure of the olfactory stimulus, and the structure of respiratory signal. This study reveals the plasticity ...

    journal_title:Scientific reports

    pub_type: 杂志文章,收录出版

    doi:10.1038/srep26948

    authors: Namazi H,Akrami A,Kulish VV

    更新日期:2016-05-31 00:00:00

  • Sorting of Single Biomolecules based on Fourier Polar Representation of Surface Enhanced Raman Spectra.

    abstract::Surface enhanced Raman scattering (SERS) spectroscopy becomes increasingly used in biosensors for its capacity to detect and identify single molecules. In practice, a large number of SERS spectra are acquired and reliable ranking methods are thus essential for analysing all these data. Supervised classification strate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20383

    authors: Leray A,Brulé T,Buret M,Colas des Francs G,Bouhelier A,Dereux A,Finot E

    更新日期:2016-02-02 00:00:00

  • Comparative Analysis of Gene Expression Profiles of Human Dental Fluorosis and Kashin-Beck Disease.

    abstract::To explore the pathologies of Kashin-Beck disease (KBD) and KBD accompanied with dental fluorosis (DF), we conducted a comparative analysis of gene expression profiles. 12 subjects were recruited, including 4 KBD patients, 4 patients with KBD and DF and 4 healthy subjects. Genome-wide expression profiles from their pe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18519-z

    authors: Zhang Q,Ma J,Liu H,He D,Chen L,Wu H,Jiang H,Lu Q,Bai S

    更新日期:2018-01-09 00:00:00

  • Ultra-high open-circuit voltage of perovskite solar cells induced by nucleation thermodynamics on rough substrates.

    abstract::To obtain high performance CH3NH3PbI3 perovskite solar cells, it is highly important to realise a high open-circuit voltage. Calculation results based on a modified diode model have indicated that a low bare ratio ϕ of the perovskite film is the most important factor determining the open-circuit voltage, where ϕ is de...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46141

    authors: Li Y,Ding B,Chu QQ,Yang GJ,Wang M,Li CX,Li CJ

    更新日期:2017-04-12 00:00:00

  • Global-scale river flood vulnerability in the last 50 years.

    abstract::The impacts of flooding are expected to rise due to population increases, economic growth and climate change. Hence, understanding the physical and spatiotemporal characteristics of risk drivers (hazard, exposure and vulnerability) is required to develop effective flood mitigation measures. Here, the long-term trend i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep36021

    authors: Tanoue M,Hirabayashi Y,Ikeuchi H

    更新日期:2016-10-26 00:00:00

  • The anti-tumor diterpene oridonin is a direct inhibitor of Nucleolin in cancer cells.

    abstract::The bioactive plant diterpene oridonin displays important pharmacological activities and is widely used in traditional Chinese medicine; however, its molecular mechanism of action is still incompletely described. In vitro and in vivo data have demonstrated anti-tumor activity of oridonin and its ability to interfere w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35088-x

    authors: Vasaturo M,Cotugno R,Fiengo L,Vinegoni C,Dal Piaz F,De Tommasi N

    更新日期:2018-11-13 00:00:00

  • Efficient quantum transmission in multiple-source networks.

    abstract::A difficult problem in quantum network communications is how to efficiently transmit quantum information over large-scale networks with common channels. We propose a solution by developing a quantum encoding approach. Different quantum states are encoded into a coherent superposition state using quantum linear optics....

    journal_title:Scientific reports

    pub_type: 杂志文章,收录出版

    doi:10.1038/srep04571

    authors: Luo MX,Xu G,Chen XB,Yang YX,Wang X

    更新日期:2014-04-02 00:00:00

  • Differential levels of Neurofilament Light protein in cerebrospinal fluid in patients with a wide range of neurodegenerative disorders.

    abstract::Cerebrospinal fluid (CSF) biomarkers are useful in the diagnosis and the prediction of progression of several neurodegenerative diseases. Among them, CSF neurofilament light (NfL) protein has particular interest, as its levels reflect neuroaxonal degeneration, a common feature in various neurodegenerative diseases. In...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66090-x

    authors: Delaby C,Alcolea D,Carmona-Iragui M,Illán-Gala I,Morenas-Rodríguez E,Barroeta I,Altuna M,Estellés T,Santos-Santos M,Turon-Sans J,Muñoz L,Ribosa-Nogué R,Sala-Matavera I,Sánchez-Saudinos B,Subirana A,Videla L,Benejam B,Si

    更新日期:2020-06-08 00:00:00

  • A study of associations between CUBN, HNF1A, and LIPC gene polymorphisms and coronary artery disease.

    abstract::The aim of this study was to identify novel genetic markers related to coronary artery disease (CAD) using a whole-exome sequencing (WES) approach and determine any associations between the selected gene polymorphisms and CAD prevalence. CUBN, HNF1A and LIPC gene polymorphisms related to CAD susceptibility were identi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-73048-6

    authors: Park HS,Kim IJ,Kim EG,Ryu CS,Lee JY,Ko EJ,Park HW,Sung JH,Kim NK

    更新日期:2020-10-01 00:00:00

  • Principles of using Cold Atmospheric Plasma Stimulated Media for Cancer Treatment.

    abstract::To date, the significant anti-cancer capacity of cold atmospheric plasma (CAP) on dozens of cancer cell lines has been demonstrated in vitro and in mice models. Conventionally, CAP was directly applied to irradiate cancer cells or tumor tissue. Over past three years, the CAP irradiated media was also found to kill can...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18339

    authors: Yan D,Talbot A,Nourmohammadi N,Cheng X,Canady J,Sherman J,Keidar M

    更新日期:2015-12-17 00:00:00

  • Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages.

    abstract::Heteroplasmy is the existence of more than one mitochondrial DNA (mtDNA) variant within a cell. The evolutionary mechanisms of heteroplasmy are not fully understood, despite being a very common phenomenon. Here we combined heteroplasmy measurements using high throughput sequencing on green turtles (Chelonia mydas) wit...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56918-6

    authors: Tikochinski Y,Carreras C,Tikochinski G,Vilaça ST

    更新日期:2020-01-14 00:00:00

  • Publisher Correction: Effect of Pufa Substrates on Fatty Acid Profile of Bifidobacterium breve Ncimb 702258 and CLA/CLNA Production in Commercial Semi-Skimmed Milk.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-019-40320-3

    authors: Fontes AL,Pimentel L,Rodríguez-Alcalá LM,Gomes A

    更新日期:2019-03-12 00:00:00

  • Interplay among p21Waf1/Cip1, MUSASHI-1 and Krüppel-like factor 4 in activation of Bmi1-CreER reserve intestinal stem cells after gamma radiation-induced injury.

    abstract::Gamma radiation is a commonly used adjuvant treatment for abdominally localized cancer. Since its therapeutic potential is limited due to gastrointestinal (GI) syndrome, elucidation of the regenerative response following radiation-induced gut injury is needed to develop a preventive treatment. Previously, we showed th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75171-w

    authors: Orzechowska EJ,Katano T,Bialkowska AB,Yang VW

    更新日期:2020-10-27 00:00:00

  • Anomalous bond length behavior and a new solid phase of bromine under pressure.

    abstract::The behavior of diatomic molecular solids under pressure have attracted great interest and been extensively studied. Under ambient pressure, the structure of bromine is known to be a molecular phase (phase I). With increasing pressure, it transforms into an incommensurate phase (phase V) before eventually to a monoato...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25649

    authors: Wu M,Tse JS,Pan Y

    更新日期:2016-05-09 00:00:00

  • Loss of A20 in BM-MSCs regulates the Th17/Treg balance in Rheumatoid Arthritis.

    abstract::Mesenchymal stem cells (MSCs) are multi-potent cells that are self-renewable and possess the potential to differentiate into multiple lineages. Several studies demonstrated that MSCs could regulate a Th17/Treg balance and could be a potential therapeutic target for Rheumatoid Arthritis (RA). A20 is highly expressed in...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18693-0

    authors: Feng Z,Zhai Y,Zheng Z,Yang L,Luo X,Dong X,Han Q,Jin J,Chen ZN,Zhu P

    更新日期:2018-01-11 00:00:00

  • A Flexible Electret Membrane with Persistent Electrostatic Effect and Resistance to Harsh Environment for Energy Harvesting.

    abstract::A novel flexible electret membrane, exhibiting persistent electrostatic effect, distinctive temperature stability and outstanding capability of resistance to harsh environment and fatigue, is demonstrated by experiment. Its excellent electret performance is correlated to the synergy of three factors, which are space c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07747-y

    authors: Huiming X,Gangjin C,Xumin C,Zhi C

    更新日期:2017-08-16 00:00:00

  • A staged screening of registered drugs highlights remyelinating drug candidates for clinical trials.

    abstract::There is no treatment for the myelin loss in multiple sclerosis, ultimately resulting in the axonal degeneration that leads to the progressive phase of the disease. We established a multi-tiered platform for the sequential screening of drugs that could be repurposed as remyelinating agents. We screened a library of 2,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45780

    authors: Eleuteri C,Olla S,Veroni C,Umeton R,Mechelli R,Romano S,Buscarinu MC,Ferrari F,Calò G,Ristori G,Salvetti M,Agresti C

    更新日期:2017-04-07 00:00:00

  • Investigation of foaming causes in three mesophilic food waste digesters: reactor performance and microbial analysis.

    abstract::Foaming negatively affects anaerobic digestion of food waste (FW). To identify the causes of foaming, reactor performance and microbial community dynamics were investigated in three mesophilic digesters treating FW. The digesters were operated under different modes, and foaming was induced with several methods. Prolif...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14258-3

    authors: He Q,Li L,Zhao X,Qu L,Wu D,Peng X

    更新日期:2017-10-20 00:00:00

  • Responses of solid tumor cells in DMEM to reactive oxygen species generated by non-thermal plasma and chemically induced ROS systems.

    abstract::In this study, we assessed the role of different reactive oxygen species (ROS) generated by soft jet plasma and chemical-induced ROS systems with regard to cell death in T98G, A549, HEK293 and MRC5 cell lines. For a comparison with plasma, we generated superoxide anion (O2(-)), hydroxyl radical (HO·), and hydrogen per...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep08587

    authors: Kaushik N,Uddin N,Sim GB,Hong YJ,Baik KY,Kim CH,Lee SJ,Kaushik NK,Choi EH

    更新日期:2015-02-26 00:00:00

  • Origin and evolution of MIR1444 genes in Salicaceae.

    abstract::miR1444s are functionally significant miRNAs targeting polyphenol oxidase (PPO) genes for cleavage. MIR1444 genes were reported only in Populus trichocarpa. Through the computational analysis of 215 RNA-seq data, four whole genome sequences of Salicaceae species and deep sequencing of six P. trichocarpa small RNA libr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39740

    authors: Wang M,Li C,Lu S

    更新日期:2017-01-10 00:00:00