A Visually Interpretable Deep Learning Framework for Histopathological Image-based Skin Cancer Diagnosis.

Abstract:

:Owing to the high incidence rate and the severe impact of skin cancer, the precise diagnosis of malignant skin tumors is a significant goal, especially considering treatment is normally effective if the tumor is detected early. Limited published histopathological image sets and the lack of an intuitive correspondence between the features of lesion areas and a certain type of skin cancer pose a challenge to the establishment of high-quality and interpretable computer-aided diagnostic (CAD) systems. To solve this problem, a light-weight attention mechanism-based deep learning framework, namely, DRANet, is proposed to differentiate 11 types of skin diseases based on a real histopathological image set collected by us during the last 10 years. The CAD system can output not only the name of a certain disease but also a visualized diagnostic report showing possible areas related to the disease. The experimental results demonstrate that the DRANet obtains significantly better performance than baseline models (i.e., InceptionV3, ResNet50, VGG16, and VGG19) with comparable parameter size and competitive accuracy with fewer model parameters. Visualized results produced by the hidden layers of the DRANet actually highlight part of the class-specific regions of diagnostic points and are valuable for decision making in the diagnosis of skin diseases.

authors

Jiang S,Li H,Jin Z

doi

10.1109/JBHI.2021.3052044

subject

Has Abstract

pub_date

2021-01-15 00:00:00

eissn

2168-2194

issn

2168-2208

journal_volume

PP

pub_type

杂志文章
  • Fusing Heterogeneous Features From Stacked Sparse Autoencoder for Histopathological Image Analysis.

    abstract::In the analysis of histopathological images, both holistic (e.g., architecture features) and local appearance features demonstrate excellent performance, while their accuracy may vary dramatically when providing different inputs. This motivates us to investigate how to fuse results from these features to enhance the a...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2015.2461671

    authors: Zhang X,Dou H,Ju T,Xu J,Zhang S

    更新日期:2016-09-01 00:00:00

  • Single-stage intake gesture detection using CTC loss and extended prefix beam search.

    abstract::Accurate detection of individual intake gestures is a key step towards automatic dietary monitoring. Both inertial sensor data of wrist movements and video data depicting the upper body have been used for this purpose. The most advanced approaches to date use a two-stage approach, in which (i) framelevel intake probab...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2020.3046613

    authors: Rouast PV,Adam M

    更新日期:2020-12-23 00:00:00

  • A Fuzzy Kernel Motion Classifier for Autonomous Stroke Rehabilitation.

    abstract::Autonomous poststroke rehabilitation systems which can be deployed outside hospital with no or reduced supervision have attracted increasing amount of research attentions due to the high expenditure associated with the current inpatient stroke rehabilitation systems. To realize an autonomous systems, a reliable patien...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2015.2430524

    authors: Zhang Z,Liparulo L,Panella M,Gu X,Fang Q

    更新日期:2016-05-01 00:00:00

  • Exploring early glaucoma and the visual field test: classification and clustering using Bayesian networks.

    abstract::Bayesian networks (BNs) are probabilistic models used for classification and clustering in several fields. Their ability to deal with unobserved variables and to integrate data and expert knowledge make them an appropriate technique for modeling eye functionality measurements in glaucoma. In this study, a set of BNs i...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2013.2289367

    authors: Ceccon S,Garway-Heath DF,Crabb DP,Tucker A

    更新日期:2014-05-01 00:00:00

  • Blind end-member and abundance extraction for multispectral fluorescence lifetime imaging microscopy data.

    abstract::This paper proposes a new blind end-member and abundance extraction (BEAE) method for multispectral fluorescence lifetime imaging microscopy (m-FLIM) data. The chemometrical analysis relies on an iterative estimation of the fluorescence decay end-members and their abundances. The proposed method is based on a linear m...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2013.2279335

    authors: Gutierrez-Navarro O,Campos-Delgado DU,Arce-Santana ER,Mendez MO,Jo JA

    更新日期:2014-03-01 00:00:00

  • A Resampling Based Grid Search Method to Improve Reliability and Robustness of Mixture-Item Response Theory Models of Multimorbid High-Risk Patients.

    abstract::There are many statistics available to the applied statistician for assessing model fit and even more methods for assessing internal and external validity. We detail a useful approach using a grid search technique that balances the internal model consistency with generalizability and can be used with models that natur...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2019.2948734

    authors: Batten AJ,Thorpe J,Piegari RI,Rosland AM

    更新日期:2020-06-01 00:00:00

  • Bi-Frequency Symmetry Difference EIT-Feasibility and Limitations of Application to Stroke Diagnosis.

    abstract:OBJECTIVE:Bi-Frequency Symmetry Difference (BFSD)-EIT can detect, localize and identify unilateral perturbations in symmetric scenes. Here, we test the viability and robustness of BFSD-EIT in stroke diagnosis. METHODS:A realistic 4-layer Finite Element Method (FEM) head model with and without bleed and clot lesions is...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2019.2960862

    authors: McDermott B,O'Halloran M,Avery J,Porter E

    更新日期:2020-08-01 00:00:00

  • A Patient-Centric Health Information Exchange Framework Using Blockchain Technology.

    abstract::Health Information Exchange (HIE) exhibits remarkable benefits for patient care such as improving healthcare quality and expediting coordinated care. The Office of the National Coordinator (ONC) for Health Information Technology is seeking patient-centric HIE designs that shift data ownership from providers to patient...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2020.2993072

    authors: Zhuang Y,Sheets LR,Chen YW,Shae ZY,Tsai JJP,Shyu CR

    更新日期:2020-08-01 00:00:00

  • Removing batch effects from histopathological images for enhanced cancer diagnosis.

    abstract::Researchers have developed computer-aided decision support systems for translational medicine that aim to objectively and efficiently diagnose cancer using histopathological images. However, the performance of such systems is confounded by nonbiological experimental variations or "batch effects" that can commonly occu...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2013.2276766

    authors: Kothari S,Phan JH,Stokes TH,Osunkoya AO,Young AN,Wang MD

    更新日期:2014-05-01 00:00:00

  • GluNet: A Deep Learning Framework for Accurate Glucose Forecasting.

    abstract::For people with Type 1 diabetes (T1D), forecasting of blood glucose (BG) can be used to effectively avoid hyperglycemia, hypoglycemia and associated complications. The latest continuous glucose monitoring (CGM) technology allows people to observe glucose in real-time. However, an accurate glucose forecast remains a ch...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2019.2931842

    authors: Li K,Liu C,Zhu T,Herrero P,Georgiou P

    更新日期:2020-02-01 00:00:00

  • LMI-Based Approaches for the Calibration of Continuous Glucose Measurement Sensors.

    abstract::The problem of online calibration and recalibration of continuous glucose monitoring (CGM) devices is considered. Two different parametric relations between interstitial and blood glucose are investigated and constructive algorithms to adaptively estimate the parameters within those relations are proposed. One charact...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2014.2341703

    authors: Kirchsteiger H,Zaccarian L,Renard E,del Re L

    更新日期:2015-09-01 00:00:00

  • Contribution of a Trunk Accelerometer System to the Characterization of Gait in Patients With Mild-to-Moderate Parkinson's Disease.

    abstract:OBJECTIVE:Gait disturbances like shuffling and short steps are obvious at visual observation in patients with advanced Parkinson's disease (PD). However, quantitative methods are increasingly used to evaluate the wide range of gait abnormalities that may occur over the disease course. The goal of this study was to test...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2015.2469540

    authors: Demonceau M,Donneau AF,Croisier JL,Skawiniak E,Boutaayamou M,Maquet D,Garraux G

    更新日期:2015-11-01 00:00:00

  • 2D and 3D CT Radiomic Features Performance Comparison in Characterization of Gastric Cancer: A Multi-center Study.

    abstract:OBJECTIVE:Radiomics, an emerging tool for medical image analysis, is potential towards precisely characterizing gastric cancer (GC). Whether using one-slice 2D annotation or whole-volume 3D annotation remains a long-time debate, especially for heterogeneous GC. We comprehensively compared 2D and 3D radiomic features' r...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2020.3002805

    authors: Meng L,Dong D,Chen X,Fang M,Wang R,Li J,Liu Z,Tian J

    更新日期:2020-06-16 00:00:00

  • Optimized Multistable Stochastic Resonance for the Enhancement of Pituitary Microadenoma in MRI.

    abstract::Magnetic resonance imaging (MRI) is the modality of choice as far as imaging diagnosis of pathologies in the pituitary gland is concerned. Furthermore, the advent of dynamic contrast enhanced (DCE) has enhanced the capability of this modality in detecting minute benign but endocrinologically significant tumors called ...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2017.2715078

    authors: Singh M,Verma A,Sharma N

    更新日期:2018-05-01 00:00:00

  • RACE-Net: A Recurrent Neural Network for Biomedical Image Segmentation.

    abstract::The level set based deformable models (LDM) are commonly used for medical image segmentation. However, they rely on a handcrafted curve evolution velocity that needs to be adapted for each segmentation task. The Convolutional Neural Networks (CNN) address this issue by learning robust features in a supervised end-to-e...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2018.2852635

    authors: Chakravarty A,Sivaswamy J

    更新日期:2019-05-01 00:00:00

  • Histopathological Image Classification With Color Pattern Random Binary Hashing-Based PCANet and Matrix-Form Classifier.

    abstract::The computer-aided diagnosis for histopathological images has attracted considerable attention. Principal component analysis network (PCANet) is a novel deep learning algorithm for feature learning with the simple network architecture and parameters. In this study, a color pattern random binary hashing-based PCANet (C...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2016.2602823

    authors: Shi J,Wu J,Li Y,Zhang Q,Ying S

    更新日期:2017-09-01 00:00:00

  • Detection of wrinkle frames in endoluminal videos using betweenness centrality measures for images.

    abstract::Intestinal contractions are one of the most important events to diagnose motility pathologies of the small intestine. When visualized by wireless capsule endoscopy (WCE), the sequence of frames that represents a contraction is characterized by a clear wrinkle structure in the central frames that corresponds to the fol...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2014.2304179

    authors: Seguí S,Drozdzal M,Zaytseva E,Malagelada C,Azpiroz F,Radeva P,Vitrià J

    更新日期:2014-11-01 00:00:00

  • A Workflow-Driven Formal Methods Approach to the Generation of Structured Checklists for Intrahospital Patient Transfers.

    abstract::Intrahospital transfers are a common but hazardous aspect of hospital care, with a large number of incidents posing a threat to patient safety. A growing body of work advocates the use of checklists for minimizing intrahospital transfer risk, but the majority of existing checklists are not guaranteed to be error-free ...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2016.2579881

    authors: Manataki A,Fleuriot J,Papapanagiotou P

    更新日期:2017-07-01 00:00:00

  • MRI-based segmentation of pubic bone for evaluation of pelvic organ prolapse.

    abstract::Pelvic organ prolapse (POP) is a major women's health problem. Its diagnosis through magnetic resonance imaging (MRI) has become popular due to current inaccuracies of clinical examination. The diagnosis of POP on MRI consists of identifying reference points on pelvic bone structures for measurement and evaluation. Ho...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2014.2302437

    authors: Onal S,Lai-Yuen SK,Bao P,Weitzenfeld A,Hart S

    更新日期:2014-07-01 00:00:00

  • Determining the semantic similarities among Gene Ontology terms.

    abstract::We present in this paper novel techniques that determine the semantic relationships among GeneOntology (GO) terms. We implemented these techniques in a prototype system called GoSE, which resides between user application and GO database. Given a set S of GO terms, GoSE would return another set S' of GO terms, where ea...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/jbhi.2013.2248742

    authors: Taha K

    更新日期:2013-05-01 00:00:00

  • Automatic annotation of seismocardiogram with high-frequency precordial accelerations.

    abstract::Seismocardiogram (SCG) is the low-frequency vibrations signal recorded from the chest using accelerometers. Peaks on dorsoventral and sternal SCG correspond to specific cardiac events. Prior research work has shown the potential of extracting such peaks for various types of monitoring and diagnosis applications. Howev...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2014.2360156

    authors: Khosrow-khavar F,Tavakolian K,Blaber AP,Zanetti JM,Fazel-Rezai R,Menon C

    更新日期:2015-07-01 00:00:00

  • An Attribute Supervised Probabilistic Dependent Matrix Tri-Factorization Model for the Prediction of Adverse Drug-Drug Interaction.

    abstract::Adverse drug-drug interaction (ADDI) becomes a significant threat to public health. Despite the detection of ADDIs is experimentally implemented in the early development phase of drug design, many potential ADDIs are still clinically explored by accidents, leading to a large number of morbidity and mortality. Several ...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2020.3048059

    authors: Zhu J,Liu Y,Zhang Y,Li D

    更新日期:2020-12-29 00:00:00

  • Robotic-Assisted Needle Steering Around Anatomical Obstacles Using Notched Steerable Needles.

    abstract::Robotic-assisted needle steering can enhance the accuracy of needle-based interventions. Application of current needle steering techniques are restricted by the limited deflection curvature of needles. Here, a novel steerable needle with improved curvature is developed and used with an online motion planner to steer t...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2017.2780192

    authors: Khadem M,Rossa C,Usmani N,Sloboda RS,Tavakoli M

    更新日期:2018-11-01 00:00:00

  • Attention-Guided 3D-CNN Framework for Glaucoma Detection and Structural-Functional Association Using Volumetric Images.

    abstract::The direct analysis of 3D Optical Coherence Tomography (OCT) volumes enables deep learning models (DL) to learn spatial structural information and discover new bio-markers that are relevant to glaucoma. Downsampling 3D input volumes is the state-of-art solution to accommodate for the limited number of training volumes...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2020.3001019

    authors: George Y,Antony BJ,Ishikawa H,Wollstein G,Schuman JS,Garnavi R

    更新日期:2020-12-01 00:00:00

  • Attention-aware Residual Network based Manifold Learning for White Blood Cells Classification.

    abstract::The classification of six types of white blood cells (WBCs) is considered essential for leukemia diagnosis, while the classification is labor-intensive and strict with the clinical experience. To relieve the complicated process with an efficient and automatic method, we propose the Attention-aware Residual Network bas...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2020.3012711

    authors: Huang P,Wang J,Zhang J,Shen Y,Liu C,Song W,Wu S,Zuo Y,Lu Z,Li D

    更新日期:2020-07-29 00:00:00

  • A Realistic Framework for Investigating Decision Making in the Brain With High Spatiotemporal Resolution Using Simultaneous EEG/fMRI and Joint ICA.

    abstract::Human decision making is a multidimensional construct, driven by a complex interplay between external factors, internal biases, and computational capacity constraints. Here, we propose a layered approach to experimental design in which multiple tasks-from simple to complex-with additional layers of complexity introduc...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2016.2590434

    authors: Kyathanahally SP,Franco-Watkins A,Zhang X,Calhoun VD,Deshpande G

    更新日期:2017-05-01 00:00:00

  • Near-realistic mobile exergames with wireless wearable sensors.

    abstract::Exergaming is expanding as an option for sedentary behavior in childhood/adult obesity and for extra exercise for gamers. This paper presents the development process for a mobile active sports exergame with near-realistic motions through the usage of body-wearable sensors. The process begins by collecting a dataset sp...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2013.2293674

    authors: Mortazavi B,Nyamathi S,Lee SI,Wilkerson T,Ghasemzadeh H,Sarrafzadeh M

    更新日期:2014-03-01 00:00:00

  • Coronary vein extraction in MSCT volumes using minimum cost path and geometrical moments.

    abstract::This work deals with the extraction of patient-specific coronary venous anatomy in preoperative multislice computed tomography (MSCT) volumes. A hybrid approach has been specifically designed for low-contrast vascular structure detection. It makes use of a minimum cost path technique with a Fast-Marching front propaga...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2013.2245420

    authors: Garcia MP,Velut J,Boulmier D,Leclercq C,Garreau M,Haigron P,Toumoulin C

    更新日期:2013-03-01 00:00:00

  • The Removal of EOG Artifacts From EEG Signals Using Independent Component Analysis and Multivariate Empirical Mode Decomposition.

    abstract::The recorded electroencephalography (EEG) signals are usually contaminated by electrooculography (EOG) artifacts. In this paper, by using independent component analysis (ICA) and multivariate empirical mode decomposition (MEMD), the ICA-based MEMD method was proposed to remove EOG artifacts (EOAs) from multichannel EE...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2015.2450196

    authors: Wang G,Teng C,Li K,Zhang Z,Yan X

    更新日期:2016-09-01 00:00:00

  • A Flexible Wearable Device for Measurement of Cardiac, Electrodermal, and Motion Parameters in Mental Healthcare Applications.

    abstract::Mental illnesses are vast and cause a lot of individual and social discomfort, with significant healthcare costs associated in terms of diagnosis and treatment. They can be triggered by a number of factors including stress, fatigue or anxiety. The associated physiological, cardiac and autonomic changes can be assessed...

    journal_title:IEEE journal of biomedical and health informatics

    pub_type: 杂志文章

    doi:10.1109/JBHI.2019.2938311

    authors: Rosa BMG,Yang GZ

    更新日期:2019-11-01 00:00:00