Insights into genomic structure and evolutionary processes of coastal Suaeda species in East Asia using cpDNA, nDNA, and genome-wide SNPs.

Abstract:

:Species in the genus Suaeda have few diagnostic characters and substantial morphological plasticity. Hence, regional floras do not provide clear taxonomic information for Suaeda spp. in East Asia. In order to assess the taxonomy of four species in the genus Suaeda (S. australis, S. maritima, S. japonica, and S. heteroptera), cpDNA (rpl32-trnL and trnH-psbA), nDNA (ITS), and MIG-seq analyses were carried out. Genome-wide SNP results indicated three lineages: (1) S. australis in Korea and S. maritima in Japan, (2) S. maritima in Korea and S. heteroptera in China, and (3) S. japionica. In phylogenetic trees and genotype analyses, cpDNA and nDNA results showed discrepancies, while S. japonica and S. maritima in Korea, and S. heteroptera in China shared the same haplotype and ribotype. We suggest that the shared haplotype may be due to chloroplast capture. Based on our results, we assume that S. japonica was formed by homoploid hybrid speciation between the two lineages.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Park JS,Jin DP,Choi BH

doi

10.1038/s41598-020-78041-7

subject

Has Abstract

pub_date

2020-12-01 00:00:00

pages

20950

issue

1

issn

2045-2322

pii

10.1038/s41598-020-78041-7

journal_volume

10

pub_type

杂志文章
  • Highly Sensitive Detection of Minimal Cardiac Ischemia using Positron Emission Tomography Imaging of Activated Platelets.

    abstract::A reliable method for the diagnosis of minimal cardiac ischemia would meet a strong demand for the sensitive diagnosis of coronary artery disease in cardiac stress testing and risk stratification in patients with chest pain but unremarkable ECGs and biomarkers. We hypothesized that platelets accumulate early on in isc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38161

    authors: Ziegler M,Alt K,Paterson BM,Kanellakis P,Bobik A,Donnelly PS,Hagemeyer CE,Peter K

    更新日期:2016-12-02 00:00:00

  • Author Correction: Electrospun nerve guide conduits have the potential to bridge peripheral nerve injuries in vivo.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-019-44658-6

    authors: Frost HK,Andersson T,Johansson S,Englund-Johansson U,Ekström P,Dahlin LB,Johansson F

    更新日期:2019-07-05 00:00:00

  • High Performance Graphene Nano-ribbon Thermoelectric Devices by Incorporation and Dimensional Tuning of Nanopores.

    abstract::Thermoelectric properties of Graphene nano-ribbons (GNRs) with nanopores (NPs) are explored for a range of pore dimensions in order to achieve a high performance two-dimensional nano-scale thermoelectric device. We reduce thermal conductivity of GNRs by introducing pores in them in order to enhance their thermoelectri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11297

    authors: Hossain MS,Al-Dirini F,Hossain FM,Skafidas E

    更新日期:2015-06-17 00:00:00

  • N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.

    abstract::N-linked glycosylation is one of the predominant post-translational modifications involved in a number of biological functions. Since experimental characterization of glycosites is challenging, glycosite prediction is crucial. Several predictors have been made available and report high performance. Most of them evalua...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52341-z

    authors: Pitti T,Chen CT,Lin HN,Choong WK,Hsu WL,Sung TY

    更新日期:2019-11-04 00:00:00

  • Charge transport mechanism in the forming-free memristor based on silicon nitride.

    abstract::Nonstoichiometric silicon nitride SiNx is a promising material for developing a new generation of high-speed, reliable flash memory device based on the resistive effect. The advantage of silicon nitride over other dielectrics is its compatibility with the silicon technology. In the present work, a silicon nitride-base...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-021-82159-7

    authors: Gismatulin AA,Kamaev GN,Kruchinin VN,Gritsenko VA,Orlov OM,Chin A

    更新日期:2021-01-28 00:00:00

  • Using static method to measure tolmetin solubility at different pressures and temperatures in supercritical carbon dioxide.

    abstract::Tolmetin is a non-steroidal anti-inflammatory drug being used to decrease the level of hormones which are the reasons for pain, swelling, tiredness, and stiffness for osteoarthritis and rheumatoid arthritis cases. We evaluated its solubility in supercritical carbon dioxide (SC-CO2) with the aim of drug nanonization, c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-76330-9

    authors: Pishnamazi M,Zabihi S,Sarafzadeh P,Borousan F,Marjani A,Pelalak R,Shirazian S

    更新日期:2020-11-11 00:00:00

  • Genesis and mechanisms controlling tornillo seismo-volcanic events in volcanic areas.

    abstract::Volcanic activity is often preceded or accompanied by different types of seismo-volcanic signals. Among these signals, the so-called tornillo (Spanish for "screw") events are considered to belong to a unique class of volcano-seismicity characterised by a long-duration coda, amplitude modulation and high-quality factor...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43842-y

    authors: Fazio M,Alparone S,Benson PM,Cannata A,Vinciguerra S

    更新日期:2019-05-14 00:00:00

  • Universal route to optimal few- to single-cycle pulse generation in hollow-core fiber compressors.

    abstract::Gas-filled hollow-core fiber (HCF) pulse post-compressors generating few- to single-cycle pulses are a key enabling tool for attosecond science and ultrafast spectroscopy. Achieving optimum performance in this regime can be extremely challenging due to the ultra-broad bandwidth of the pulses and the need of an adequat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-20580-1

    authors: Conejero Jarque E,San Roman J,Silva F,Romero R,Holgado W,Gonzalez-Galicia MA,Alonso B,Sola IJ,Crespo H

    更新日期:2018-02-02 00:00:00

  • Bursts of Bipolar Microsecond Pulses Inhibit Tumor Growth.

    abstract::Irreversible electroporation (IRE) is an emerging focal therapy which is demonstrating utility in the treatment of unresectable tumors where thermal ablation techniques are contraindicated. IRE uses ultra-short duration, high-intensity monopolar pulsed electric fields to permanently disrupt cell membranes within a wel...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14999

    authors: Sano MB,Arena CB,Bittleman KR,DeWitt MR,Cho HJ,Szot CS,Saur D,Cissell JM,Robertson J,Lee YW,Davalos RV

    更新日期:2015-10-13 00:00:00

  • MTHFR gene variants and non-MALT lymphoma development in primary Sjogren's syndrome.

    abstract::Primary Sjogren's syndrome (pSS) confers increased risk for non-Hodgkin lymphoma (NHL) development. Two common polymorphisms, the c. 677C > T and c. 1298A > C, of the methylene-tetrahydrofolate reductase (MTHFR) gene, an enzyme essential in DNA synthesis and methylation, have been associated with susceptibility to NHL...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07347-w

    authors: Fragkioudaki S,Nezos A,Souliotis VL,Chatziandreou I,Saetta AA,Drakoulis N,Tzioufas AG,Voulgarelis M,Sfikakis PP,Koutsilieris M,Crow MK,Moutsopoulos HM,Mavragani CP

    更新日期:2017-08-04 00:00:00

  • Caloric restriction promotes functional changes involving short-chain fatty acid biosynthesis in the rat gut microbiota.

    abstract::Caloric restriction (CR) is known to promote health and longevity, likely via modification of the gut microbiota (GM). However, functional and metabolic changes induced in the GM during CR are still unidentified. Here, we investigated the short- and long-term effects of CR on the rat GM using a metaproteogenomic appro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33100-y

    authors: Tanca A,Abbondio M,Palomba A,Fraumene C,Marongiu F,Serra M,Pagnozzi D,Laconi E,Uzzau S

    更新日期:2018-10-03 00:00:00

  • Comparison of radiotherapy techniques with flattening filter and flattening filter-free in lung radiotherapy according to the treatment volume size.

    abstract::In external radiotherapy (RT), the use of flattening filter-free (FFF) radiation beams obtained by removing the flattening filter (FF) in standard linear accelerators is rapidly increasing, and the benefits of clinical use are the issue of research. Advanced treatment techniques have increased the interest in the oper...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66079-6

    authors: Arslan A,Sengul B

    更新日期:2020-06-02 00:00:00

  • Novel mechanism of harmaline on inducing G2/M cell cycle arrest and apoptosis by up-regulating Fas/FasL in SGC-7901 cells.

    abstract::Harmaline (HAR), a natural occurrence β-carboline alkaloid, was isolated from the seeds of Peganum harmala and exhibited potent antitumor effect. In this study, the anti-gastric tumor effects of HAR were firstly investigated in vitro and in vivo. The results strongly showed that HAR could inhibit tumor cell proliferat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep18613

    authors: Wang Y,Wang C,Jiang C,Zeng H,He X

    更新日期:2015-12-18 00:00:00

  • Anti-HERV-WEnv antibodies are correlated with seroreactivity against Mycobacterium avium subsp. paratuberculosis in children and youths at T1D risk.

    abstract::Recent evidence points at the role that human endogenous retroviruses (HERVs) may play through the activation of genes integrated across the human genome. Although a variety of genetic/epigenetic mechanisms maintain most HERVs silenced, independent environmental stimuli including infections may transactivate endogenou...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42788-5

    authors: Niegowska M,Wajda-Cuszlag M,Stępień-Ptak G,Trojanek J,Michałkiewicz J,Szalecki M,Sechi LA

    更新日期:2019-04-18 00:00:00

  • Bio-compatible organic humidity sensor based on natural inner egg shell membrane with multilayer crosslinked fiber structure.

    abstract::In this paper, we propose a novel bio-compatible organic humidity sensor based on natural inner egg shell membrane (IESM) with multilayer cross linked fiber structure that can be used as a substrate as well as a sensing active layer. To fabricate the proposed sensors, two different size inter digital electrodes (IDEs)...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42337-0

    authors: Khan MU,Hassan G,Bae J

    更新日期:2019-04-09 00:00:00

  • Protective and therapeutic effect of felodipine against bleomycin-induced pulmonary fibrosis in mice.

    abstract::Idiopathic pulmonary fibrosis (IPF) involves alveolar epithelial injury and abnormal collagen production caused by activated fibroblasts; transforming growth factor (TGF)-β1 is implicated in this activation. In this study, we screened for chemicals capable of inhibiting TGF-β1-induced collagen production in cultured f...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-03676-y

    authors: Tanaka KI,Niino T,Ishihara T,Takafuji A,Takayama T,Kanda Y,Sugizaki T,Tamura F,Kurotsu S,Kawahara M,Mizushima T

    更新日期:2017-06-13 00:00:00

  • Endotoxin tolerance in mast cells, its consequences for IgE-mediated signalling, and the effects of BCL3 deficiency.

    abstract::Stimulation with lipopolysaccharide (LPS; endotoxin) not only causes rapid production of proinflammatory cytokines, but also induces a state of LPS hypo-responsiveness to a second LPS stimulation (endotoxin tolerance (ET)). Murine bone marrow-derived MCs (BMMCs) and peritoneal MCs (PMCs) developed ET as shown by an ab...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04890-4

    authors: Poplutz M,Levikova M,Lüscher-Firzlaff J,Lesina M,Algül H,Lüscher B,Huber M

    更新日期:2017-07-03 00:00:00

  • Immunotoxicity of polystyrene nanoplastics in different hemocyte subpopulations of Mytilus galloprovincialis.

    abstract::Plastic represents 60-80% of litter in the ocean. Degradation of plastic to small fragments leads to the formation of microplastics (MPs <5 mm) and nanoplastics (NPs <1 µm). One of the most widely used and representative plastics found in the ocean is polystyrene (PS). Among marine organisms, the immune system of biva...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-65596-8

    authors: Sendra M,Carrasco-Braganza MI,Yeste PM,Vila M,Blasco J

    更新日期:2020-05-25 00:00:00

  • Fetal exposure to HIV-1 alters chemokine receptor expression by CD4+T cells and increases susceptibility to HIV-1.

    abstract::Absolute numbers of lymphocytes are decreased in uninfected infants born to HIV-1-infected women (HIV-1-exposed). Although the exact mechanism is unknown, fetal exposure to maternal HIV-1-infection could prime the immune system and affect T cell trafficking. We compared the expression of chemokine receptors on cord bl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06690

    authors: Bunders MJ,van Hamme JL,Jansen MH,Boer K,Kootstra NA,Kuijpers TW

    更新日期:2014-10-24 00:00:00

  • Thermoreversible (Ionic-Liquid-Based) Aqueous Biphasic Systems.

    abstract::The ability to induce reversible phase transitions between homogeneous solutions and biphasic liquid-liquid systems, at pre-defined and suitable operating temperatures, is of crucial relevance in the design of separation processes. Ionic-liquid-based aqueous biphasic systems (IL-based ABS) have demonstrated superior p...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20276

    authors: Passos H,Luís A,Coutinho JA,Freire MG

    更新日期:2016-02-04 00:00:00

  • Lossless Three-Dimensional Parallelization in Digitally Scanned Light-Sheet Fluorescence Microscopy.

    abstract::We introduce a concept that enables parallelized three-dimensional imaging throughout large volumes with isotropic 300-350 nm resolution. By staggering high aspect ratio illumination beams laterally and axially within the depth of focus of a digitally scanned light-sheet fluorescence microscope (LSFM), multiple image ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08113-8

    authors: Dean KM,Fiolka R

    更新日期:2017-08-24 00:00:00

  • Role of flagella and type four pili in the co-migration of Burkholderia terrae BS001 with fungal hyphae through soil.

    abstract::Burkholderia terrae BS001 has previously been found to be able to disperse along with growing fungal hyphae in soil, with the type-3 secretion system having a supportive role in this movement. In this study, we focus on the role of two motility- and adherence-associated appendages, i.e. type-4 pili (T4P) and flagella....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02959-8

    authors: Yang P,Zhang M,van Elsas JD

    更新日期:2017-06-07 00:00:00

  • Space division multiplexing chip-to-chip quantum key distribution.

    abstract::Quantum cryptography is set to become a key technology for future secure communications. However, to get maximum benefit in communication networks, transmission links will need to be shared among several quantum keys for several independent users. Such links will enable switching in quantum network nodes of the quantu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12309-3

    authors: Bacco D,Ding Y,Dalgaard K,Rottwitt K,Oxenløwe LK

    更新日期:2017-09-29 00:00:00

  • Tailoring the robust superhydrophobic silicon textures with stable photodetection properties.

    abstract::Surface hydrophobicity of silicon with sound durability under mechanical abrasion is highly desirable for practical needs. However, the reported micro-pyramid/nanowires structures suffer from the saturation characteristics of contact angle at around 132 degree, which impede the promotions toward reaching the state of ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-37853-4

    authors: Hsiao M,Chen KY,Chen CY

    更新日期:2019-02-07 00:00:00

  • The Microbiome of the Maculinea-Myrmica Host-Parasite Interaction.

    abstract::Maculinea (=Phengaris) are endangered butterflies that are characterized by a very complex biological cycle. Maculinea larvae behave as obligate parasites whose survival is strictly dependent on both particular food plants and species-specific Myrmica ants. In this interaction, Maculinea caterpillars induce Myrmica wo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44514-7

    authors: Di Salvo M,Calcagnile M,Talà A,Tredici SM,Maffei ME,Schönrogge K,Barbero F,Alifano P

    更新日期:2019-05-29 00:00:00

  • Optimization and evaluation of a non-invasive tool for peste des petits ruminants surveillance and control.

    abstract::Peste des petits ruminants (PPR) is a highly contagious and devastating viral disease affecting mainly sheep and goats, but also a large number of wild species within the order Artiodactyla. A better understanding of PPR transmission dynamics in multi-host systems is necessary to efficiently control the disease, in pa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-41232-y

    authors: Bataille A,Kwiatek O,Belfkhi S,Mounier L,Parida S,Mahapatra M,Caron A,Chubwa CC,Keyyu J,Kock R,Jones BA,Libeau G

    更新日期:2019-03-18 00:00:00

  • Droplet-based microtumor model to assess cell-ECM interactions and drug resistance of gastric cancer cells.

    abstract::Gastric cancer (GC) is a common aggressive malignant tumor with high incidence and mortality worldwide. GC is classified into intestinal and diffuse types according to the histo-morphological features. Because of distinctly different clinico-pathological features, new cancer therapy strategies and in vitro preclinical...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep41541

    authors: Jang M,Koh I,Lee SJ,Cheong JH,Kim P

    更新日期:2017-01-27 00:00:00

  • S-nitrosylation of UCHL1 induces its structural instability and promotes α-synuclein aggregation.

    abstract::Ubiquitin C-terminal Hydrolase-1 (UCHL1) is a deubiquitinating enzyme, which plays a key role in Parkinson's disease (PD). It is one of the most important proteins, which constitute Lewy body in PD patient. However, how this well folded highly soluble protein presents in this proteinaceous aggregate is still unclear. ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep44558

    authors: Kumar R,Jangir DK,Verma G,Shekhar S,Hanpude P,Kumar S,Kumari R,Singh N,Sarovar Bhavesh N,Ranjan Jana N,Kanti Maiti T

    更新日期:2017-03-16 00:00:00

  • A five-year longitudinal observational study in morbidity and mortality of negative appendectomy in Sulaimani teaching Hospital/Kurdistan Region/Iraq.

    abstract::The most common surgical emergency is suspected acute appendicitis, the lifetime risk of acute appendicitis is estimated to be 8.6% for men and 6.7% for women, with a male to female ratio of 1.4:1; correct diagnosis can be made in 70-80% of patients after the operations about 32% of appendectomies revealed normal appe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58847-1

    authors: Ahmed HO,Muhedin R,Boujan A,Aziz AHS,Abdulla AM,Hardi RA,Abdulla AA,Sidiq TA

    更新日期:2020-02-06 00:00:00

  • Extending the Spectrum of Dysgraphia: A Data Driven Strategy to Estimate Handwriting Quality.

    abstract::This paper proposes new ways to assess handwriting, a critical skill in any child's school journey. Traditionally, a pen and paper test called the BHK test (Concise Evaluation Scale for Children's Handwriting) is used to assess children's handwriting in French-speaking countries. Any child with a BHK score above a cer...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60011-8

    authors: Asselborn T,Chapatte M,Dillenbourg P

    更新日期:2020-02-21 00:00:00