Detection and characterization of a second carlavirus in Rosa sp.

Abstract:

:A new virus resembling members in the genus Carlavirus was identified in an Out of Yesteryear rose (Rosa sp.) by high-throughput sequencing. The virus was discovered during the screening of a rose virus collection belonging to Foundation Plant Services (UC-Davis). The full genome of the virus is 8825 nt long, excluding a poly(A) tail, and includes six predicted genes coding for replicase, triple gene block, coat protein (CP), and nucleic acid binding protein. The closest relative of the putative virus is rose virus A (RVA; genus Carlavirus), with 75% and 78% aa sequence identity in the replicase and CP, respectively. The relationship with RVA and other carlaviruses was supported by phylogenetic analyses using replicase and CP sequences. Based on genome organization, sequence identity, and phylogenetic analysis, the virus found in the Out of Yesteryear plant represents a new member of the genus Carlavirus and is provisionally named "rose virus B" (RVB). Further testing by reverse transcription PCR confirmed the presence of RVB in the original source and seven additional rose selections from the same collection.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Diaz-Lara A,Mollov D,Golino D,Al Rwahnih M

doi

10.1007/s00705-020-04864-4

subject

Has Abstract

pub_date

2021-01-01 00:00:00

pages

321-323

issue

1

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-020-04864-4

journal_volume

166

pub_type

杂志文章
  • Stable polypeptides associated with the 250S mengovirus-induced RNA polymerase structure.

    abstract::One host polypeptide (40,000 daltons) synthesized prior to infection is associated with the 250S RNA polymerase structure partially purified by a combination of velocity sedimentation and isopycnic separation. A series of pulse-chase experiments have shown that a 56,000 dalton polypeptide made during the eclipse phase...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317808

    authors: Loesch WT Jr,Arlinghaus A

    更新日期:1975-01-01 00:00:00

  • Pattern of N gene-mediated systemic hypersensitive response and turnover of viral replicase protein in tobacco.

    abstract::We examined the pattern of the N gene-mediated systemic hypersensitive response (HR), which was induced by tobacco mosaic virus upon temperature shift, and analyzed the distribution of the coat protein and the virus-encoded 126 kDa replicase protein (126 K protein) by immunoblot analysis. In the middle- and lower-posi...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-004-0373-0

    authors: Someya N,Niinuma K,Kimura M,Yamaguchi I,Hamamoto H

    更新日期:2004-11-01 00:00:00

  • Acute effect of infection by adipogenic human adenovirus Ad36.

    abstract::Human adenovirus Ad36 is causally and correlatively associated in animals and humans, respectively, with increased adiposity and altered metabolic profile. We inoculated rats with Ad36 or UV-inactivated Ad36, or mock-infected them. Four days later, Ad36-infected rats showed 23% greater epididymal fat pad weight and vi...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0219-2

    authors: Pasarica M,Loiler S,Dhurandhar NV

    更新日期:2008-01-01 00:00:00

  • Laboratory detection and molecular phylogenetic analysis of severe fever with thrombocytopenia syndrome virus in Hubei Province, central China.

    abstract::Severe fever with thrombocytopenia syndrome (SFTS) is an emerging infectious disease caused by the SFTS virus (SFTSV). Hubei Province is a major epidemic area for SFTS in China. In this study, quantitative reverse-transcription polymerase chain reaction (qRT-PCR) and serological testing (IgM) were used simultaneously ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3993-5

    authors: Hu B,Cai K,Liu M,Li W,Xu J,Qiu F,Zhan J

    更新日期:2018-12-01 00:00:00

  • High-frequency mutation and recombination are responsible for the emergence of novel porcine reproductive and respiratory syndrome virus in northwest China.

    abstract::Porcine reproductive and respiratory syndrome (PRRS) is one of the most highly infectious diseases in the pig industry, resulting in enormous economic losses worldwide. In this study, a PRRS virus (PRRSV) strain was isolated from primary porcine alveolar macrophage cells in Xinjiang in northwest China. This new strain...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-019-04373-z

    authors: Zhang X,Li Y,Xiao S,Yang X,Chen X,Wu P,Song J,Ma Z,Cai Z,Jiang M,Zhang Y,Yang Y,Zhang Z,Zhou Z,Sheng J,Wang H

    更新日期:2019-11-01 00:00:00

  • Occurrence of two different types of RNA-5-containing beet necrotic yellow vein virus in the UK.

    abstract::Two types of RNA-5-containing beet necrotic yellow vein virus (BNYVV) have been detected in the UK at different sites in Norfolk. On the basis of nucleotide (nt) sequence comparisons, one virus source (UK-MH) was clearly identified as P type BNYVV, a virus type that had previously only been detected in two widely sepa...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-006-0832-x

    authors: Ward L,Koenig R,Budge G,Garrido C,McGrath C,Stubbley H,Boonham N

    更新日期:2007-01-01 00:00:00

  • A single amino acid change at Leu-188 in the reverse transcriptase of HIV-2 and SIV renders them sensitive to non-nucleoside reverse transcriptase inhibitors.

    abstract::Non-nucleoside reverse transcriptase inhibitors (NNRTIs) are selective for human immunodeficiency virus type 1 (HIV-1) and generally not effective on HIV-2 or simian immunodeficiency virus (SIV). Only SIVagm was found to be sensitive to NNRTIs. When the amino acid differences in RT between SIVmac and SIVagm were compa...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050170143

    authors: Isaka Y,Miki S,Kawauchi S,Suyama A,Sugimoto H,Adachi A,Miura T,Hayami M,Yoshie O,Fujiwara T,Sato A

    更新日期:2001-01-01 00:00:00

  • Occurrence and role of an early antigen and evidence for transforming ability of porcine circovirus.

    abstract::By means of indirect immunofluorescence assay (IFA) using natural swine immune serum and hyperimmune serum from rabbits infected with porcine circovirus (PCV), a PCV antigen was detected present prior to the onset of viral and cellular DNA synthesis in nucleoli of cells of synchronized and growth stimulated infected P...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01384343

    authors: Tischer I,Peters D,Pociuli S

    更新日期:1995-01-01 00:00:00

  • Tetracycline and viruses: a possible treatment for COVID-19?

    abstract::Tetracyclines have been used to treat many bacterial infections. The use of these antibiotics for the treatment of viral diseases dates to the 1960s to 1970s. Over the decades, the effect of tetracyclines on the pathogenesis of viral infections has been demonstrated both clinically and experimentally. Tetracyclines ca...

    journal_title:Archives of virology

    pub_type: 杂志文章,评审

    doi:10.1007/s00705-020-04860-8

    authors: Mosquera-Sulbaran JA,Hernández-Fonseca H

    更新日期:2021-01-01 00:00:00

  • Contact infection of mink with 5 subtypes of avian influenza virus. Brief report.

    abstract::Avian influenza viruses of H3N8, H11N4, H7N7, H8N4, and H5N3 infected mink by contact. ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309274

    authors: Okazaki K,Yanagawa R,Kida H

    更新日期:1983-01-01 00:00:00

  • Noroviruses and sapoviruses associated with acute gastroenteritis in pediatric patients in Thailand: increased detection of recombinant norovirus GII.P16/GII.13 strains.

    abstract::Enteric caliciviruses, including noroviruses (NoVs) and sapoviruses (SaVs), are recognized as important etiologic agents of acute gastroenteritis (AGE) with considerable genetic diversity. In order to gain an overview of the molecular epidemiology of human NoVs and SaVs in children hospitalized with AGE in Chiang Mai,...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3501-3

    authors: Khamrin P,Kumthip K,Supadej K,Thongprachum A,Okitsu S,Hayakawa S,Ushijima H,Maneekarn N

    更新日期:2017-11-01 00:00:00

  • Characterization and nuclear localization of the fiber protein encoded by the late region 7 of bovine adenovirus type 3.

    abstract::To identify the protein encoded by the L7 region of bovine adenovirus-3 (BAdV-3), specific antisera were raised by immunizing rabbits with bacterial fusion proteins encoding the N-terminus or C-terminus of the BAdV-3 fiber protein. Immunoprecipitation and Western blot analysis confirmed that the fiber is expressed as ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-004-0323-x

    authors: Wu Q,Chen Y,Kulshreshtha V,Tikoo SK

    更新日期:2004-09-01 00:00:00

  • Changes in the morphology of influenza particles induced at low pH.

    abstract::At low pH influenza virus causes membrane fusion. This phenomenon is thought to reflect a part of the infection mechanism of the virus. To obtain more information on the effect of low pH on the virus, the change in morphology of influenza virus particles was studied by electron microscopy. Further, the degradation of ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01311162

    authors: Ruigrok RW,Cremers AF,Beyer WE,de Ronde-Verloop FM

    更新日期:1984-01-01 00:00:00

  • Columbid circoviruses detected in free ranging pigeons from Southern Brazil: insights on PiCV evolution.

    abstract::Pigeon circovirus (PiCV) is taxonomically classified as a member of the Circovirus genus, family Circoviridae. The virus contains a single stranded DNA genome of approximately 2 kb, with minor length variations among different isolates. The occurrence of PiCV infections in pigeons (Columba livia) has been documented w...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3990-8

    authors: Loiko MR,Junqueira DM,Varela APM,Tochetto C,Scheffer CM,Lima DA,Morel AP,Cerva C,Paim WP,Mayer FQ,Roehe PM

    更新日期:2018-11-01 00:00:00

  • B-cell activation in cats with feline infectious peritonitis (FIP) by FIP-virus-induced B-cell differentiation/survival factors.

    abstract::It has been suggested that antibody overproduction plays a role in the pathogenesis of feline infectious peritonitis (FIP). However, only a few studies on the B-cell activation mechanism after FIP virus (FIPV) infection have been reported. The present study shows that: (1) the ratio of peripheral blood sIg(+) CD21(-) ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0265-9

    authors: Takano T,Azuma N,Hashida Y,Satoh R,Hohdatsu T

    更新日期:2009-01-01 00:00:00

  • Role of Langerhans cells in the infection of the guinea-pig epidermis with foot-and-mouth disease virus.

    abstract::In guinea-pig infected with foot-and-mouth disease virus (FMDV), Langerhans cells in the foot pads increase in number and show viral antigens 24 hours post-inoculation, preceding appearance of virus in epithelial cells and vesiculation. This observation suggests that Langerhans cells may be engaged in virus transport ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309929

    authors: di Girolamo W,Salas M,Laguens RP

    更新日期:1985-01-01 00:00:00

  • Identification and characterization of the interaction between viroplasm-associated proteins from two different plant-infecting reoviruses and eEF-1A of rice.

    abstract::A rice protein homologous to eukaryotic translation elongation factor 1A (eEF-1A) was found to interact with the Pns6 of rice ragged stunt virus (RRSV), the type member of the genus Oryzavirus, family Reoviridae, in yeast two-hybrid screening. The interaction between the rice protein, designated OseEF-1A, and RRSV Pns...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-013-1703-x

    authors: Songbai Z,Zhenguo D,Liang Y,Zhengjie Y,Kangcheng W,Guangpu L,Zujian W,Lianhui X

    更新日期:2013-10-01 00:00:00

  • Stability, biophysical properties and effect of ultracentrifugation and diafiltration on measles virus and mumps virus.

    abstract::Measles virus and mumps virus (MeV and MuV) are enveloped RNA viruses used for production of live attenuated vaccines for prophylaxis of measles and mumps disease, respectively. For biotechnological production of and basic research on these viruses, the preparation of highly purified and infectious viruses is a prereq...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2801-3

    authors: Sviben D,Forčić D,Kurtović T,Halassy B,Brgles M

    更新日期:2016-06-01 00:00:00

  • Lectin-mediated enhancement of dengue virus infection in a mouse macrophage cell line Mk1.

    abstract::Treatment of a mouse macrophage cell line Mk1 with pokeweed mitogen (PWM) either before or during but not after virus inoculation resulted in an enhancement of dengue virus (DV) infection. The infection enhancement was primarily due to an increase in the number of DV-infected cells but not to increased virus productio...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01379106

    authors: Hotta H,Homma M

    更新日期:1994-01-01 00:00:00

  • Isolation and genomic characterization of a novel avian orthoreovirus strain in Korea, 2014.

    abstract::In this study, we isolated a novel avian reovirus (ARV) strain, K738/14, from a broiler chicken with viral arthritis in South Korea. Genome sequence comparisons showed relatively low nucleotide identity with previously identified ARV strains. Phylogenetic analyses suggested multiple reassortment events between reoviru...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3667-8

    authors: Noh JY,Lee DH,Lim TH,Lee JH,Day JM,Song CS

    更新日期:2018-05-01 00:00:00

  • Further molecular characterisation of potyviruses infecting aroid plants for medicinal use in China.

    abstract::Degenerate primers were used to detect and amplify 3'-terminal genome fragments of potyviruses from medicinal aroid plants growing at 16 sites in China. Virus was detected in 7 samples of which six, all of Pinellia ternata, contained a strain of soybean mosaic virus (SMV) similar to that previously reported from this ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-004-0390-z

    authors: Shi YH,Hong XY,Chen J,Adams MJ,Zheng HY,Lin L,Qin BX,Chen JP

    更新日期:2005-01-01 00:00:00

  • A rat cytomegalovirus strain with a disruption of the r144 MHC class I-like gene is attenuated in the acute phase of infection in neonatal rats.

    abstract::We previously generated an RCMV strain in which the r144 gene, encoding a major histocompatibility complex class I homolog, had been deleted (RCMVdelta r144). To investigate the role of r144 during acute infection of neonatal rats, we infected three days-old neonatal rats with either RCMVdelta r144 or wild type (wt) R...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050200028

    authors: Kloover JS,Grauls GE,Blok MJ,Vink C,Bruggeman CA

    更新日期:2002-04-01 00:00:00

  • Comparison of the humoral and cellular immune response after immunization with live, UV inactivated herpes simplex virus and a subunit vaccine and efficacy of these immunizations.

    abstract::Antibody and cell-mediated immune responses were measured in rabbits immunized with live, UV inactivated herpes simplex virus or with a subunit vaccine containing envelope proteins. All the types of immunization procedures induced the production of antibody as well as a specific cellular immunity. Furthermore, the sub...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317862

    authors: Cappel R

    更新日期:1976-01-01 00:00:00

  • Molecular cloning and physical mapping of bovine herpesvirus 4 strain DN 599 and comparison with two American field-isolates.

    abstract::Ninety four percent of the genome of bovine herpesvirus 4 (BHV-4) strain DN 599 was cloned and a physical map was constructed by Southern blot analysis using a library of cloned fragments cleaved with the 3 restriction enzymes (Eco RI, Bam HI, and Hin dIII). The genome length was estimated to be 156.5 kbp +/- 0.7. The...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309576

    authors: Shen DT,Burger D,Tong GZ,Gorham JR

    更新日期:1992-01-01 00:00:00

  • Promoter activity in the 5' flanking regions of the Bohle iridovirus ICP 18, ICP 46 and major capsid protein genes.

    abstract::Bohle iridovirus (BIV) belongs to the genus Ranavirus, of which Frog virus 3 (FV-3) is the type species. We are developing BIV as a recombinant viral delivery vector, and as a first step we located specific BIV promoter sequences to drive foreign gene expression in the recombinant virus. By comparison with FV-3 sequen...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-005-0532-y

    authors: Pallister J,Goldie S,Coupar B,Hyatt A

    更新日期:2005-09-01 00:00:00

  • Role of the TK+ phenotype in the stability of pigeonpox virus recombinant.

    abstract::Insertion of foreign DNA containing the E. coli gpt marker by homologous recombination in the pigeonpox virus (PPV) thymidine kinase (TK) gene and selection for the presence of this DNA in the viral genome produced unstable recombinants after 3 plaque purifications. We highlight the persistence of duplicated TK DNA se...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01378643

    authors: Letellier C

    更新日期:1993-01-01 00:00:00

  • Genetic variability of subgroup A and B respiratory syncytial virus strains circulating in southwestern China from 2009 to 2011.

    abstract::Human respiratory syncytial virus (RSV) is recognized as a leading pathogen responsible for severe respiratory infections in the pediatric population, particularly in infants and young children. A previous study by the same study group revealed that the RSV BA strain was prevalent in southwestern China in epidemic sea...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-012-1552-z

    authors: Qin X,Zhang C,Zhao Y,Zhao X

    更新日期:2013-07-01 00:00:00

  • Influenza A virus drift variants reduced the detection sensitivity of a commercial multiplex nucleic acid amplification assay in the season 2014/15.

    abstract::The influenza season 2014/15 was dominated by drift variants of influenza A(H3N2), which resulted in a reduced vaccine effectiveness. It was not clear if the performance of commercial nucleic-acid-based amplification (NAT) assays for the detection of influenza was affected. The purpose of this study was to perform a r...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2930-8

    authors: Huzly D,Korn K,Bierbaum S,Eberle B,Falcone V,Knöll A,Steininger P,Panning M

    更新日期:2016-09-01 00:00:00

  • Continued circulation of reassortant H1N2 influenza viruses in pigs in Japan.

    abstract::In 1991 and 1992, H1N2 influenza A viruses were isolated from the lungs of pigs with overt signs of respiratory disease at farms in the Chiba and Kanagawa prefectures of Japan. To determine the genetic origin of these isolates, we phylogenetically analyzed partial nucleotide sequences of their genes. The results indic...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050415

    authors: Ito T,Kawaoka Y,Vines A,Ishikawa H,Asai T,Kida H

    更新日期:1998-01-01 00:00:00

  • Antiviral effect of lithium chloride on feline calicivirus in vitro.

    abstract::Feline calicivirus (FCV) is a highly contagious pathogen that causes oral and upper respiratory tract disease in cats. Despite widespread vaccination, the prevalence of FCV remains high. Furthermore, a high gene mutation rate has led to the emergence of variants, and some infections are lethal. To date, there is no ef...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2534-8

    authors: Wu H,Zhang X,Liu C,Liu D,Liu J,Tian J,Qu L

    更新日期:2015-12-01 00:00:00