Metabolomic and transcriptomic analyses reveal the regulation of pigmentation in the purple variety of Dendrobium officinale.

Abstract:

:We performed an integrated analysis of the transcriptome and metabolome from purple (Pr) and normal cultivated varieties (CK) of Dendrobium officinale to gain insights into the regulatory networks associated with phenylpropanoid metabolism and to identify the key regulatory genes of pigmentation. Metabolite and transcript profiling were conducted by ultra-performance liquid chromatography electrospray tandem mass spectrometry (UPLC-ESI-MS/MS) and RNA sequencing. Pr had more flavonoids in the stem than did CK. Metabolome analyses showed that 148 differential metabolites are involved in the biosynthesis of phenylpropanoids, amino acids, purines, and organic acids. Among them, the delphinidin and quercetin derivatives were significantly higher in Pr. A total of 4927 differentially expressed genes (DEGs) were significantly enriched (p ≤ 0.01) in 50 Gene Ontology (GO) terms. Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analyses revealed significantly enriched phenylpropanoid biosynthesis and phytohormone signal transduction in Pr versus CK. The expression levels of flavanone 3-hydroxylase (F3H) and leucoanthocyanidin dioxygenase (LDOX) affected the flux of dihydroflavonol, which led to a color change in Pr. Moreover, DEG enrichment and metabolite analyses reflected flavonoid accumulation in Pr related to brassinosteroid (BR) and auxin metabolism. The results of this study elucidate phenylpropanoid biosynthesis in D. officinale.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Zhan X,Qi J,Zhou B,Mao B

doi

10.1038/s41598-020-74789-0

subject

Has Abstract

pub_date

2020-10-19 00:00:00

pages

17700

issue

1

issn

2045-2322

pii

10.1038/s41598-020-74789-0

journal_volume

10

pub_type

杂志文章
  • Magnetically-induced ferroelectricity in the (ND4)2[FeCl5(D2O)] molecular compound.

    abstract::The number of magnetoelectric multiferroic materials reported to date is scarce, as magnetic structures that break inversion symmetry and induce an improper ferroelectric polarization typically arise through subtle competition between different magnetic interactions. The (NH4)2[FeCl5(H2O)] compound is a rare case wher...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14475

    authors: Alberto Rodríguez-Velamazán J,Fabelo Ó,Millán Á,Campo J,Johnson RD,Chapon L

    更新日期:2015-09-29 00:00:00

  • Microwave & magnetic (M2) proteomics reveals CNS-specific protein expression waves that precede clinical symptoms of experimental autoimmune encephalomyelitis.

    abstract::Central nervous system-specific proteins (CSPs), transported across the damaged blood-brain-barrier (BBB) to cerebrospinal fluid (CSF) and blood (serum), might be promising diagnostic, prognostic and predictive protein biomarkers of disease in individual multiple sclerosis (MS) patients because they are not expected t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06210

    authors: Raphael I,Mahesula S,Purkar A,Black D,Catala A,Gelfond JA,Forsthuber TG,Haskins WE

    更新日期:2014-09-03 00:00:00

  • Fatty liver is associated with blood pathways of inflammatory response, immune system activation and prothrombotic state in Young Finns Study.

    abstract::Fatty liver (FL) disease is the most common type of chronic liver disease. We hypothesized that liver's response to the process where large droplets of triglyceride fat accumulate in liver cells is reflected also in gene pathway expression in blood. Peripheral blood genome wide gene expression analysis and ultrasonic ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28563-y

    authors: Taipale T,Seppälä I,Raitoharju E,Mononen N,Lyytikäinen LP,Illig T,Waldenberger M,Juonala M,Hutri-Kähönen N,Oksala N,Kähönen M,Raitakari O,Lehtimäki T

    更新日期:2018-07-09 00:00:00

  • EGFR is a pivotal regulator of thrombin-mediated inflammation in primary human nucleus pulposus culture.

    abstract::We found that the coagulation and cytokine pathways were important mechanisms involve in the degeneration of intervertebral discs (IVD) using a microarray approach to analyze gene expression in different grades of specimens. Furthermore, using a cytokine/chemokine array, a significant increase in CXCL8 expression was ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09122-3

    authors: Huang BR,Chen TS,Bau DT,Chuang IC,Tsai CF,Chang PC,Lu DY

    更新日期:2017-08-17 00:00:00

  • Optical properties, spectral, and lifetime measurements of central nervous system tumors in humans.

    abstract::A key challenge of central nervous system tumor surgery is to discriminate between brain regions infiltrated by tumor cells and surrounding healthy tissue. Although monitoring of autofluorescence could potentially be an efficient way to provide reliable information for these regions, we found little information on thi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14381-1

    authors: Poulon F,Mehidine H,Juchaux M,Varlet P,Devaux B,Pallud J,Abi Haidar D

    更新日期:2017-10-25 00:00:00

  • Publisher Correction: In vitro replicative fitness of early Transmitted founder HIV-1 variants and sensitivity to Interferon alpha.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-020-68818-1

    authors: Ashokkumar M,Sonawane A,Sperk M,Tripathy SP,Neogi U,Hanna LE

    更新日期:2020-08-10 00:00:00

  • P-fimbriae in the presence of anti-PapA antibodies: new insight of antibodies action against pathogens.

    abstract::Uropathogenic strains of Escherichia coli establish urinary tract infections by attaching to host epithelial cells using adhesive organelles called fimbriae. Fimbriae are helix-like structures with a remarkable adaptability, offering safeguarding for bacteria exposed to changing fluid forces in the urinary tract. We c...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep03393

    authors: Mortezaei N,Singh B,Bullitt E,Uhlin BE,Andersson M

    更新日期:2013-12-02 00:00:00

  • Flatbed epi relief-contrast cellular monitoring system for stable cell culture.

    abstract::Consistent cell preparation is a fundamental preliminary step for understanding complex cellular mechanisms in various cell-based research fields, including basic cell biology, cancer research, and tissue engineering. However, certain elusive factors, such as cellular de-differentiation and contamination with mycoplas...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02001-x

    authors: Osaki T,Kageyama T,Shimazu Y,Mysnikova D,Takahashi S,Takimoto S,Fukuda J

    更新日期:2017-05-15 00:00:00

  • Ultrastructure imaging of Pseudomonas aeruginosa lawn biofilms and eradication of the tobramycin-resistant variants under in vitro electroceutical treatment.

    abstract::Electrochemically generated bactericidal compounds have been shown to eradicate bacterial lawn biofilms through electroceutical treatment. However, the ultrastructure of biofilms exposed to these species has not been studied. Moreover, it is unknown if the efficacy of electroceutical treatment extends to antibiotic-re...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66823-y

    authors: Lochab V,Jones TH,Dusane DH,Peters CW,Stoodley P,Wozniak DJ,Subramaniam VV,Prakash S

    更新日期:2020-06-18 00:00:00

  • Identification of significantly mutated subnetworks in the breast cancer genome.

    abstract::Recent studies showed that somatic cancer mutations target genes that are in specific signaling and cellular pathways. However, in each patient only a few of the pathway genes are mutated. Current approaches consider only existing pathways and ignore the topology of the pathways. For this reason, new efforts have been...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80204-5

    authors: Ajwad R,Domaratzki M,Liu Q,Feizi N,Hu P

    更新日期:2021-01-12 00:00:00

  • Physiological outcomes of calming behaviors support the resilience hypothesis in horses.

    abstract::To manage a stressful stimulus animals react both behaviorally and physiologically to restore the homeostasis. In stable horses, a stressful stimulus can be represented by social separation, riding discomfort or the presence of novel objects in their environment. Although Heart Rate Variability is a common indicator o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35561-7

    authors: Scopa C,Palagi E,Sighieri C,Baragli P

    更新日期:2018-11-30 00:00:00

  • pH-responsive Virus-like Nanoparticles with Enhanced Tumour-targeting Ligands for Cancer Drug Delivery.

    abstract::Multifunctional nanocarriers harbouring specific targeting moieties and with pH-responsive properties offer great potential for targeted cancer therapy. Several synthetic drug carriers have been studied extensively as drug delivery systems but not much information is available on the application of virus-like nanopart...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37891

    authors: Biabanikhankahdani R,Alitheen NBM,Ho KL,Tan WS

    更新日期:2016-11-24 00:00:00

  • Intravenous C16 and angiopoietin-1 improve the efficacy of placenta-derived mesenchymal stem cell therapy for EAE.

    abstract::The placenta has emerged as an attractive source of mesenchymal stem cells (MSCs) because of the absence of ethical issues, non-invasive access, and abundant yield. However, inflammatory cell invasion into grafts negatively impacts the survival and efficacy of transplanted cells. Previous studies have shown that synth...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22867-9

    authors: Tian KW,Zhang YY,Jiang H,Han S

    更新日期:2018-03-15 00:00:00

  • Novel function of LHFPL2 in female and male distal reproductive tract development.

    abstract::Congenital reproductive tract anomalies could impair fertility. Female and male reproductive tracts are developed from Müllerian ducts and Wolffian ducts, respectively, involving initiation, elongation and differentiation. Genetic basis solely for distal reproductive tract development is largely unknown. Lhfpl2 (lipom...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23037

    authors: Zhao F,Zhou J,Li R,Dudley EA,Ye X

    更新日期:2016-03-11 00:00:00

  • Vulnerability of mixotrophic algae to nutrient pulses and UVR in an oligotrophic Southern and Northern Hemisphere lake.

    abstract::Nutrient inputs and ultraviolet radiation (UVR) are global factors affecting the structure and functioning of aquatic ecosystems, particularly clear-water ecosystems. We performed experiments in two model lakes highly exposed to UVR fluxes in order to test the effect that future increases in mineral nutrients transpor...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06279-9

    authors: Carrillo P,Medina-Sánchez JM,Villar-Argaiz M,Bullejos FJ,Durán C,Bastidas-Navarro M,Souza MS,Balseiro EG,Modenutti BE

    更新日期:2017-07-24 00:00:00

  • Author Correction: Isolated terawatt attosecond hard X-ray pulse generated from single current spike.

    abstract::A correction to this article has been published and is linked from the HTML and PDF versions of this paper. The error has not been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 已发布勘误

    doi:10.1038/s41598-019-44364-3

    authors: Shim CH,Parc YW,Kumar S,Ko IS,Kim DE

    更新日期:2019-06-06 00:00:00

  • Suppression of gut dysbiosis by Bifidobacterium longum alleviates cognitive decline in 5XFAD transgenic and aged mice.

    abstract::To understand the role of commensal gut bacteria on the progression of cognitive decline in Alzheimer's disease via the microbiota-gut-brain axis, we isolated anti-inflammatory Bifidobacterium longum (NK46) from human gut microbiota, which potently inhibited gut microbiota endotoxin production and suppressed NF-κB act...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48342-7

    authors: Lee HJ,Lee KE,Kim JK,Kim DH

    更新日期:2019-08-14 00:00:00

  • Identification of a novel interaction between corticotropin releasing hormone (Crh) and macroautophagy.

    abstract::In inflammatory bowel disease (IBD), compromised restitution of the epithelial barrier contributes to disease severity. Owing to the complexity in the pathogenesis of IBD, a variety of factors have been implicated in its progress. In this study, we report a functional interaction between macroautophagy and Corticotrop...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23342

    authors: Giannogonas P,Apostolou A,Manousopoulou A,Theocharis S,Macari SA,Psarras S,Garbis SD,Pothoulakis C,Karalis KP

    更新日期:2016-03-18 00:00:00

  • Engineering the hinge region of human IgG1 Fc-fused bispecific antibodies to improve fragmentation resistance.

    abstract::Fc domain fusion can improve the therapeutic effects of relatively small biological molecules such as peptides, cytokines, and antibody fragments. Fc fusion proteins can also be used to enhance the cytotoxic effects of small bispecific antibodies (bsAbs). However, fragmentation of Fc fusion proteins, which mainly occu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35489-y

    authors: Suzuki S,Annaka H,Konno S,Kumagai I,Asano R

    更新日期:2018-11-22 00:00:00

  • Atomistic study of the solid state inside graphene nanobubbles.

    abstract::A two-dimensional (2D) material placed on an atomically flat substrate can lead to the formation of surface nanobubbles trapping different types of substances. In this paper graphene nanobubbles of the radius of 7-34 nm with argon atoms inside are studied using molecular dynamics (MD). All modeled graphene nanobubbles...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-18226-9

    authors: Iakovlev E,Zhilyaev P,Akhatov I

    更新日期:2017-12-20 00:00:00

  • Study of the interactions of a novel monoclonal antibody, mAb059c, with the hPD-1 receptor.

    abstract::Programmed cell death 1 (PD-1) monoclonal antibodies have been approved by regulatory agencies for the treatment of various types of cancer, and the mechanism involves the restoration of T cell functions. We report herein the X-ray crystal structure of a fully human monoclonal antibody mAb059c fragment antigen-binding...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54231-w

    authors: Liu J,Wang G,Liu L,Wu R,Wu Y,Fang C,Zhou X,Jiao J,Gu Y,Zhou H,Xie Z,Sun Z,Chen D,Dai K,Wang D,Tang W,Yang TTC

    更新日期:2019-11-28 00:00:00

  • Expression response of chalcone synthase gene to inducing conditions and its effect on flavonoids accumulation in two medicinal species of Anoectochilus.

    abstract::Anoectochilus roxburghii and Anoectochilus formasanus are the major species of genus Anoectochilus used in traditional Chinese medicine for their abundant content of flavonoids and some other medicinal constituents. In recent years, their wild resources are gradually exhausted due to over-collection and ecological det...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56821-0

    authors: Yang L,Zhang JC,Qu JT,He G,Yu HQ,Li WC,Fu FL

    更新日期:2019-12-27 00:00:00

  • Body Fat Percentage in Relation to Lung Function in Individuals with Normal Weight Obesity.

    abstract::Accumulating evidence indicates the association between obesity and lung function. However, no previous study has examined whether obesity affects lung function in normal weight participants with high body fat. We hypothesized that subjects with normal weight obesity (NWO) were inversely associated with lung function ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38804-3

    authors: Chen YY,Kao TW,Fang WH,Wang CC,Chang YW,Yang HF,Wu CJ,Sun YS,Chen WL

    更新日期:2019-06-20 00:00:00

  • Post-floral Erection of Stalks Provides Insight into the Evolution of Fruit Orientation and Its Effects on Seed Dispersal.

    abstract::That stalks reorient after flowering to face upwards is a common phenomenon in many flowering plants, indicating the potential importance of fruit orientation on seed dispersal. But this idea has not been subject to an empirical test. We examined this hypothesis by analysing the evolutionary correlation between fruit ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep20146

    authors: Niu Y,Zhou Z,Sha W,Sun H

    更新日期:2016-02-02 00:00:00

  • Reversible mislocalization of a disease-associated MRE11 splice variant product.

    abstract::Ataxia-telangiectasia (AT) and related disorders feature cancer predisposition, neurodegeneration, and immunodeficiency resulting from failure to respond to DNA damage. Hypomorphic mutations in MRE11 cause an AT-like disorder (ATLD) with variable clinical presentation. We have sought to understand how diverse MRE11 mu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28370-5

    authors: Hartlerode AJ,Regal JA,Ferguson DO

    更新日期:2018-07-04 00:00:00

  • A High Throughput Ambient Mass Spectrometric Approach to Species Identification and Classification from Chemical Fingerprint Signatures.

    abstract::A high throughput method for species identification and classification through chemometric processing of direct analysis in real time (DART) mass spectrometry-derived fingerprint signatures has been developed. The method entails introduction of samples to the open air space between the DART ion source and the mass spe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep11520

    authors: Musah RA,Espinoza EO,Cody RB,Lesiak AD,Christensen ED,Moore HE,Maleknia S,Drijfhout FP

    更新日期:2015-07-09 00:00:00

  • Audio-visuomotor processing in the musician's brain: an ERP study on professional violinists and clarinetists.

    abstract::The temporal dynamics of brain activation during visual and auditory perception of congruent vs. incongruent musical video clips was investigated in 12 musicians from the Milan Conservatory of music and 12 controls. 368 videos of a clarinetist and a violinist playing the same score with their instruments were presente...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05866

    authors: Proverbio AM,Calbi M,Manfredi M,Zani A

    更新日期:2014-07-29 00:00:00

  • Spatiotemporal dynamics and quantitative analysis of phytoplasmas in insect vectors.

    abstract::Phytoplasmas are transmitted by insect vectors in a persistent propagative manner; however, detailed movements and multiplication patterns of phytoplasmas within vectors remain elusive. In this study, spatiotemporal dynamics of onion yellows (OY) phytoplasma in its vector Macrosteles striifrons were investigated by im...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-61042-x

    authors: Koinuma H,Maejima K,Tokuda R,Kitazawa Y,Nijo T,Wei W,Kumita K,Miyazaki A,Namba S,Yamaji Y

    更新日期:2020-03-09 00:00:00

  • BMP signaling mediates glioma stem cell quiescence and confers treatment resistance in glioblastoma.

    abstract::Despite advances in therapy, glioblastoma remains an incurable disease with a dismal prognosis. Recent studies have implicated cancer stem cells within glioblastoma (glioma stem cells, GSCs) as mediators of therapeutic resistance and tumor progression. In this study, we investigated the role of the transforming growth...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-51270-1

    authors: Sachdeva R,Wu M,Johnson K,Kim H,Celebre A,Shahzad U,Graham MS,Kessler JA,Chuang JH,Karamchandani J,Bredel M,Verhaak R,Das S

    更新日期:2019-10-10 00:00:00

  • Direct evaluation of influence of electron damage on the subcell performance in triple-junction solar cells using photoluminescence decays.

    abstract::Tandem solar cells are suited for space applications due to their high performance, but also have to be designed in such a way to minimize influence of degradation by the high energy particle flux in space. The analysis of the subcell performance is crucial to understand the device physics and achieve optimized design...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02141-0

    authors: Tex DM,Nakamura T,Imaizumi M,Ohshima T,Kanemitsu Y

    更新日期:2017-05-16 00:00:00