Identification and Analysis of microRNAs in Chlorella sorokiniana Using High-Throughput Sequencing.

Abstract:

:Chlorella is a popular microalga with robust physiological and biochemical characteristics, which can be cultured under various conditions. The exploration of the small RNA content of Chlorella could improve strategies for the enhancement of metabolite production from this microalga. In this study, stress was introduced to the Chlorella sorokiniana culture to produce high-value metabolites such as carotenoids and phenolic content. The small RNA transcriptome of C. sorokiniana was sequenced, focusing on microRNA (miRNA) content. From the analysis, 98 miRNAs were identified in cultures subjected to normal and stress conditions. The functional analysis result showed that the miRNA targets found were most often involved in the biosynthesis of secondary metabolites, followed by protein metabolism, cell cycle, and porphyrin and chlorophyll metabolism. Furthermore, the biosynthesis of secondary metabolites such as carotenoids, terpenoids, and lipids was found mostly in stress conditions. These results may help to improve our understanding of regulatory mechanisms of miRNA in the biological and metabolic process of Chlorella species. It is important and timely to determine the true potential of this microalga species and to support the potential for genetic engineering of microalgae as they receive increasing focus for their development as an alternative source of biofuel, food, and health supplements.

journal_name

Genes (Basel)

journal_title

Genes

authors

Azaman SNA,Satharasinghe DA,Tan SW,Nagao N,Yusoff FM,Yeap SK

doi

10.3390/genes11101131

subject

Has Abstract

pub_date

2020-09-25 00:00:00

issue

10

issn

2073-4425

pii

genes11101131

journal_volume

11

pub_type

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