Publisher Correction: Reconciling qualitative, abstract, and scalable modeling of biological networks.

Abstract:

:An amendment to this paper has been published and can be accessed via a link at the top of the paper.

journal_name

Nat Commun

journal_title

Nature communications

authors

Paulevé L,Kolčák J,Chatain T,Haar S

doi

10.1038/s41467-020-18766-1

subject

Has Abstract

pub_date

2020-09-24 00:00:00

pages

4900

issue

1

issn

2041-1723

pii

10.1038/s41467-020-18766-1

journal_volume

11

pub_type

已发布勘误
  • Structural insight into SUMO chain recognition and manipulation by the ubiquitin ligase RNF4.

    abstract::The small ubiquitin-like modifier (SUMO) can form polymeric chains that are important signals in cellular processes such as meiosis, genome maintenance and stress response. The SUMO-targeted ubiquitin ligase RNF4 engages with SUMO chains on linked substrates and catalyses their ubiquitination, which targets substrates...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms5217

    authors: Xu Y,Plechanovová A,Simpson P,Marchant J,Leidecker O,Kraatz S,Hay RT,Matthews SJ

    更新日期:2014-06-27 00:00:00

  • High-power lithium-selenium batteries enabled by atomic cobalt electrocatalyst in hollow carbon cathode.

    abstract::Selenium cathodes have attracted considerable attention due to high electronic conductivity and volumetric capacity comparable to sulphur cathodes. However, practical development of lithium-selenium batteries has been hindered by the low selenium reaction activity with lithium, high volume changes and rapid capacity f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18820-y

    authors: Tian H,Tian H,Wang S,Chen S,Zhang F,Song L,Liu H,Liu J,Wang G

    更新日期:2020-10-06 00:00:00

  • High protein copy number is required to suppress stochasticity in the cyanobacterial circadian clock.

    abstract::Circadian clocks generate reliable ~24-h rhythms despite being based on stochastic biochemical reactions. The circadian clock in Synechococcus elongatus uses a post-translational oscillator that cycles deterministically in a test tube. Because the volume of a single bacterial cell is much smaller than a macroscopic re...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05109-4

    authors: Chew J,Leypunskiy E,Lin J,Murugan A,Rust MJ

    更新日期:2018-08-01 00:00:00

  • Titania supported synergistic palladium single atoms and nanoparticles for room temperature ketone and aldehydes hydrogenation.

    abstract::Selective reduction of ketone/aldehydes to alcohols is of great importance in green chemistry and chemical engineering. Highly efficient catalysts are still demanded to work under mild conditions, especially at room temperature. Here we present a synergistic function of single-atom palladium (Pd1) and nanoparticles (P...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13941-5

    authors: Kuai L,Chen Z,Liu S,Kan E,Yu N,Ren Y,Fang C,Li X,Li Y,Geng B

    更新日期:2020-01-07 00:00:00

  • Exosomes harbor B cell targets in pancreatic adenocarcinoma and exert decoy function against complement-mediated cytotoxicity.

    abstract::Although B cell response is frequently found in cancer, there is little evidence that it alters tumor development or progression. The process through which tumor-associated antigens trigger humoral response is not well delineated. We investigate the repertoire of antigens associated with humoral immune response in pan...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08109-6

    authors: Capello M,Vykoukal JV,Katayama H,Bantis LE,Wang H,Kundnani DL,Aguilar-Bonavides C,Aguilar M,Tripathi SC,Dhillon DS,Momin AA,Peters H,Katz MH,Alvarez H,Bernard V,Ferri-Borgogno S,Brand R,Adler DG,Firpo MA,Mulvihill S

    更新日期:2019-01-16 00:00:00

  • Receptor-binding loops in alphacoronavirus adaptation and evolution.

    abstract::RNA viruses are characterized by a high mutation rate, a buffer against environmental change. Nevertheless, the means by which random mutation improves viral fitness is not well characterized. Here we report the X-ray crystal structure of the receptor-binding domain (RBD) of the human coronavirus, HCoV-229E, in comple...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01706-x

    authors: Wong AHM,Tomlinson ACA,Zhou D,Satkunarajah M,Chen K,Sharon C,Desforges M,Talbot PJ,Rini JM

    更新日期:2017-11-23 00:00:00

  • Atomically defined angstrom-scale all-carbon junctions.

    abstract::Full-carbon electronics at the scale of several angstroms is an expeimental challenge, which could be overcome by exploiting the versatility of carbon allotropes. Here, we investigate charge transport through graphene/single-fullerene/graphene hybrid junctions using a single-molecule manipulation technique. Such sub-n...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09793-8

    authors: Tan Z,Zhang D,Tian HR,Wu Q,Hou S,Pi J,Sadeghi H,Tang Z,Yang Y,Liu J,Tan YZ,Chen ZB,Shi J,Xiao Z,Lambert C,Xie SY,Hong W

    更新日期:2019-04-15 00:00:00

  • Biomimetic design of iridescent insect cuticles with tailored, self-organized cholesteric patterns.

    abstract::Replicating biological patterns is promising for designing materials with multifaceted properties. Twisted cholesteric liquid crystal patterns are found in the iridescent tessellated cuticles of many insects and a few fruits. Their accurate replication is extremely difficult since discontinuous patterns and colors mus...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-17884-0

    authors: Scarangella A,Soldan V,Mitov M

    更新日期:2020-08-14 00:00:00

  • Time-space-resolved origami hierarchical electronics for ultrasensitive detection of physical and chemical stimuli.

    abstract::Recent years have witnessed thriving progress of flexible and portable electronics, with very high demand for cost-effective and tailor-made multifunctional devices. Here, we report on an ingenious origami hierarchical sensor array (OHSA) written with a conductive ink. Thanks to origami as a controllable hierarchical ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09070-8

    authors: Zhang M,Sun JJ,Khatib M,Lin ZY,Chen ZH,Saliba W,Gharra A,Horev YD,Kloper V,Milyutin Y,Huynh TP,Brandon S,Shi G,Haick H

    更新日期:2019-03-08 00:00:00

  • Identification of recurrent FHL2-GLI2 oncogenic fusion in sclerosing stromal tumors of the ovary.

    abstract::Sclerosing stromal tumor (SST) of the ovary is a rare type of sex cord-stromal tumor (SCST), whose genetic underpinning is currently unknown. Here, using whole-exome, targeted capture and RNA-sequencing, we report recurrent FHL2-GLI2 fusion genes in 65% (17/26) of SSTs and other GLI2 rearrangements in additional 15% (...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13806-x

    authors: Kim SH,Da Cruz Paula A,Basili T,Dopeso H,Bi R,Pareja F,da Silva EM,Gularte-Mérida R,Sun Z,Fujisawa S,Smith CG,Ferrando L,Martins Sebastião AP,Bykov Y,Li A,Silveira C,Ashley CW,Stylianou A,Selenica P,Samore WR,Jung

    更新日期:2020-01-02 00:00:00

  • Andreev molecules in semiconductor nanowire double quantum dots.

    abstract::Chains of quantum dots coupled to superconductors are promising for the realization of the Kitaev model of a topological superconductor. While individual superconducting quantum dots have been explored, control of longer chains requires understanding of interdot coupling. Here, double quantum dots are defined by gate ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00665-7

    authors: Su Z,Tacla AB,Hocevar M,Car D,Plissard SR,Bakkers EPAM,Daley AJ,Pekker D,Frolov SM

    更新日期:2017-09-19 00:00:00

  • Synchronized conductivity modulation to realize broadband lossless magnetic-free non-reciprocity.

    abstract::Recent research has explored the spatiotemporal modulation of permittivity to break Lorentz reciprocity in a manner compatible with integrated-circuit fabrication. However, permittivity modulation is inherently weak and accompanied by loss due to carrier injection, particularly at higher frequencies, resulting in larg...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00798-9

    authors: Dinc T,Tymchenko M,Nagulu A,Sounas D,Alu A,Krishnaswamy H

    更新日期:2017-10-06 00:00:00

  • Author Correction: Targeting QKI-7 in vivo restores endothelial cell function in diabetes.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41467-020-18712-1

    authors: Yang C,Eleftheriadou M,Kelaini S,Morrison T,González MV,Caines R,Edwards N,Yacoub A,Edgar K,Moez A,Ivetic A,Zampetaki A,Zeng L,Wilkinson FL,Lois N,Stitt AW,Grieve DJ,Margariti A

    更新日期:2020-09-16 00:00:00

  • Evidence for the alkaline nature of parental carbonatite melts at Oka complex in Canada.

    abstract::The Earth's sole active carbonatite volcano, Oldoinyo Lengai (Tanzania), is presently erupting unique natrocarbonatite lavas that are characterized by Na- and K-bearing magmatic carbonates of nyerereite [Na2Ca(CO3)2] and gregoryite [(Na2,K2,Ca)CO3]. Contrarily, the vast majority of older, plutonic carbonatite occurren...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3687

    authors: Chen W,Kamenetsky VS,Simonetti A

    更新日期:2013-01-01 00:00:00

  • Crucial roles of RSK in cell motility by catalysing serine phosphorylation of EphA2.

    abstract::Crosstalk between inflammatory signalling pathways and receptor tyrosine kinases has been revealed as an indicator of cancer malignant progression. In the present study, we focus on EphA2 receptor tyrosine kinase, which is overexpressed in many human cancers. It has been reported that ligand-independent phosphorylatio...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8679

    authors: Zhou Y,Yamada N,Tanaka T,Hori T,Yokoyama S,Hayakawa Y,Yano S,Fukuoka J,Koizumi K,Saiki I,Sakurai H

    更新日期:2015-07-09 00:00:00

  • Microtubule acetylation amplifies p38 kinase signalling and anti-inflammatory IL-10 production.

    abstract::Reversible acetylation of α-tubulin is an evolutionarily conserved modification in microtubule networks. Despite its prevalence, the physiological function and regulation of microtubule acetylation remain poorly understood. Here we report that macrophages challenged by bacterial lipopolysaccharides (LPS) undergo exten...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms4479

    authors: Wang B,Rao YH,Inoue M,Hao R,Lai CH,Chen D,McDonald SL,Choi MC,Wang Q,Shinohara ML,Yao TP

    更新日期:2014-03-17 00:00:00

  • Direct visualization of cell division using high-resolution imaging of M-phase of the cell cycle.

    abstract::Current approaches to monitor and quantify cell division in live cells, and reliably distinguish between acytokinesis and endoreduplication, are limited and complicate determination of stem cell pool identities. Here we overcome these limitations by generating an in vivo reporter system using the scaffolding protein a...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2089

    authors: Hesse M,Raulf A,Pilz GA,Haberlandt C,Klein AM,Jabs R,Zaehres H,Fügemann CJ,Zimmermann K,Trebicka J,Welz A,Pfeifer A,Röll W,Kotlikoff MI,Steinhäuser C,Götz M,Schöler HR,Fleischmann BK

    更新日期:2012-01-01 00:00:00

  • Budding-like division of all-aqueous emulsion droplets modulated by networks of protein nanofibrils.

    abstract::Networks of natural protein nanofibrils, such as cytoskeletal filaments, control the shape and the division of cells, yet mimicking this functionality in a synthetic setting has proved challenging. Here, we demonstrate that artificial networks of protein nanofibrils can induce controlled deformation and division of al...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04510-3

    authors: Song Y,Michaels TCT,Ma Q,Liu Z,Yuan H,Takayama S,Knowles TPJ,Shum HC

    更新日期:2018-05-29 00:00:00

  • Synergistic effect of quinary molten salts and ruthenium catalyst for high-power-density lithium-carbon dioxide cell.

    abstract::With a recent increase in interest in metal-gas batteries, the lithium-carbon dioxide cell has attracted considerable attention because of its extraordinary carbon dioxide-capture ability during the discharge process and its potential application as a power source for Mars exploration. However, owing to the stable lit...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-14121-1

    authors: Baek K,Jeon WC,Woo S,Kim JC,Lee JG,An K,Kwak SK,Kang SJ

    更新日期:2020-01-23 00:00:00

  • Cep57 is a Mis12-interacting kinetochore protein involved in kinetochore targeting of Mad1-Mad2.

    abstract::The spindle assembly checkpoint (SAC) arrests cells in mitosis by sensing unattached kinetochores, until all chromosomes are bi-oriented by spindle microtubules. Kinetochore accumulation of the SAC component Mad1-Mad2 is crucial for SAC activation. However, the mechanism by which Mad1-Mad2 accumulation at kinetochores...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10151

    authors: Zhou H,Wang T,Zheng T,Teng J,Chen J

    更新日期:2016-01-08 00:00:00

  • A correlated nickelate synaptic transistor.

    abstract::Inspired by biological neural systems, neuromorphic devices may open up new computing paradigms to explore cognition, learning and limits of parallel computation. Here we report the demonstration of a synaptic transistor with SmNiO₃, a correlated electron system with insulator-metal transition temperature at 130°C in ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms3676

    authors: Shi J,Ha SD,Zhou Y,Schoofs F,Ramanathan S

    更新日期:2013-01-01 00:00:00

  • Automated mass spectrometry imaging of over 2000 proteins from tissue sections at 100-μm spatial resolution.

    abstract::Biological tissues exhibit complex spatial heterogeneity that directs the functions of multicellular organisms. Quantifying protein expression is essential for elucidating processes within complex biological assemblies. Imaging mass spectrometry (IMS) is a powerful emerging tool for mapping the spatial distribution of...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13858-z

    authors: Piehowski PD,Zhu Y,Bramer LM,Stratton KG,Zhao R,Orton DJ,Moore RJ,Yuan J,Mitchell HD,Gao Y,Webb-Robertson BM,Dey SK,Kelly RT,Burnum-Johnson KE

    更新日期:2020-01-07 00:00:00

  • Human large-scale cooperation as a product of competition between cultural groups.

    abstract::A fundamental puzzle of human evolution is how we evolved to cooperate with genetically unrelated strangers in transient interactions. Group-level selection on culturally differentiated populations is one proposed explanation. We evaluate a central untested prediction of Cultural Group Selection theory, by assessing w...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-14416-8

    authors: Handley C,Mathew S

    更新日期:2020-02-04 00:00:00

  • The tetraspanin CD9 controls migration and proliferation of parietal epithelial cells and glomerular disease progression.

    abstract::The mechanisms driving the development of extracapillary lesions in focal segmental glomerulosclerosis (FSGS) and crescentic glomerulonephritis (CGN) remain poorly understood. A key question is how parietal epithelial cells (PECs) invade glomerular capillaries, thereby promoting injury and kidney failure. Here we show...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11013-2

    authors: Lazareth H,Henique C,Lenoir O,Puelles VG,Flamant M,Bollée G,Fligny C,Camus M,Guyonnet L,Millien C,Gaillard F,Chipont A,Robin B,Fabrega S,Dhaun N,Camerer E,Kretz O,Grahammer F,Braun F,Huber TB,Nochy D,Mandet C,

    更新日期:2019-07-24 00:00:00

  • Amplitude mode in the planar triangular antiferromagnet Na0.9MnO2.

    abstract::Amplitude modes arising from symmetry breaking in materials are of broad interest in condensed matter physics. These modes reflect an oscillation in the amplitude of a complex order parameter, yet are typically unstable and decay into oscillations of the order parameter's phase. This renders stable amplitude modes rar...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-04601-1

    authors: Dally RL,Zhao Y,Xu Z,Chisnell R,Stone MB,Lynn JW,Balents L,Wilson SD

    更新日期:2018-06-05 00:00:00

  • Novel pleiotropic risk loci for melanoma and nevus density implicate multiple biological pathways.

    abstract::The total number of acquired melanocytic nevi on the skin is strongly correlated with melanoma risk. Here we report a meta-analysis of 11 nevus GWAS from Australia, Netherlands, UK, and USA comprising 52,506 individuals. We confirm known loci including MTAP, PLA2G6, and IRF4, and detect novel SNPs in KITLG and a regio...

    journal_title:Nature communications

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41467-018-06649-5

    authors: Duffy DL,Zhu G,Li X,Sanna M,Iles MM,Jacobs LC,Evans DM,Yazar S,Beesley J,Law MH,Kraft P,Visconti A,Taylor JC,Liu F,Wright MJ,Henders AK,Bowdler L,Glass D,Ikram MA,Uitterlinden AG,Madden PA,Heath AC,Nelson EC,

    更新日期:2018-11-14 00:00:00

  • Mutualism increases diversity, stability, and function of multiplex networks that integrate pollinators into food webs.

    abstract::Ecosystems are composed of complex networks of many species interacting in different ways. While ecologists have long studied food webs of feeding interactions, recent studies increasingly focus on mutualistic networks including plants that exchange food for reproductive services provided by animals such as pollinator...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-15688-w

    authors: Hale KRS,Valdovinos FS,Martinez ND

    更新日期:2020-05-01 00:00:00

  • The mutational landscape of a prion-like domain.

    abstract::Insoluble protein aggregates are the hallmarks of many neurodegenerative diseases. For example, aggregates of TDP-43 occur in nearly all cases of amyotrophic lateral sclerosis (ALS). However, whether aggregates cause cellular toxicity is still not clear, even in simpler cellular systems. We reasoned that deep mutagene...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12101-z

    authors: Bolognesi B,Faure AJ,Seuma M,Schmiedel JM,Tartaglia GG,Lehner B

    更新日期:2019-09-13 00:00:00

  • Enantiomer-specific analysis of multi-component mixtures by correlated electron imaging-ion mass spectrometry.

    abstract::Simultaneous, enantiomer-specific identification of chiral molecules in multi-component mixtures is extremely challenging. Many established techniques for single-component analysis fail to provide selectivity in multi-component mixtures and lack sensitivity for dilute samples. Here we show how enantiomers may be diffe...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms8511

    authors: Fanood MM,Ram NB,Lehmann CS,Powis I,Janssen MH

    更新日期:2015-06-24 00:00:00

  • An evolutionarily-conserved Wnt3/β-catenin/Sp5 feedback loop restricts head organizer activity in Hydra.

    abstract::Polyps of the cnidarian Hydra maintain their adult anatomy through two developmental organizers, the head organizer located apically and the foot organizer basally. The head organizer is made of two antagonistic cross-reacting components, an activator, driving apical differentiation and an inhibitor, preventing ectopi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-08242-2

    authors: Vogg MC,Beccari L,Iglesias Ollé L,Rampon C,Vriz S,Perruchoud C,Wenger Y,Galliot B

    更新日期:2019-01-18 00:00:00