Conformation of sister chromatids in the replicated human genome.

Abstract:

:The three-dimensional organization of the genome supports regulated gene expression, recombination, DNA repair, and chromosome segregation during mitosis. Chromosome conformation capture (Hi-C)1,2 analysis has revealed a complex genomic landscape of internal chromosomal structures in vertebrate cells3-7, but the identical sequence of sister chromatids has made it difficult to determine how they topologically interact in replicated chromosomes. Here we describe sister-chromatid-sensitive Hi-C (scsHi-C), which is based on labelling of nascent DNA with 4-thio-thymidine and nucleoside conversion chemistry. Genome-wide conformation maps of human chromosomes reveal that sister-chromatid pairs interact most frequently at the boundaries of topologically associating domains (TADs). Continuous loading of a dynamic cohesin pool separates sister-chromatid pairs inside TADs and is required to focus sister-chromatid contacts at TAD boundaries. We identified a subset of TADs that are overall highly paired and are characterized by facultative heterochromatin and insulated topological domains that form separately within individual sister chromatids. The rich pattern of sister-chromatid topologies and our scsHi-C technology will make it possible to investigate how physical interactions between identical DNA molecules contribute to DNA repair, gene expression, chromosome segregation, and potentially other biological processes.

journal_name

Nature

journal_title

Nature

authors

Mitter M,Gasser C,Takacs Z,Langer CCH,Tang W,Jessberger G,Beales CT,Neuner E,Ameres SL,Peters JM,Goloborodko A,Micura R,Gerlich DW

doi

10.1038/s41586-020-2744-4

subject

Has Abstract

pub_date

2020-10-01 00:00:00

pages

139-144

issue

7827

eissn

0028-0836

issn

1476-4687

pii

10.1038/s41586-020-2744-4

journal_volume

586

pub_type

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