Large domains of heterochromatin direct the formation of short mitotic chromosome loops.

Abstract:

:During mitosis chromosomes reorganise into highly compact, rod-shaped forms, thought to consist of consecutive chromatin loops around a central protein scaffold. Condensin complexes are involved in chromatin compaction, but the contribution of other chromatin proteins, DNA sequence and histone modifications is less understood. A large region of fission yeast DNA inserted into a mouse chromosome was previously observed to adopt a mitotic organisation distinct from that of surrounding mouse DNA. Here, we show that a similar distinct structure is common to a large subset of insertion events in both mouse and human cells and is coincident with the presence of high levels of heterochromatic H3 lysine nine trimethylation (H3K9me3). Hi-C and microscopy indicate that the heterochromatinised fission yeast DNA is organised into smaller chromatin loops than flanking euchromatic mouse chromatin. We conclude that heterochromatin alters chromatin loop size, thus contributing to the distinct appearance of heterochromatin on mitotic chromosomes.

journal_name

Elife

journal_title

eLife

authors

Fitz-James MH,Tong P,Pidoux AL,Ozadam H,Yang L,White SA,Dekker J,Allshire RC

doi

10.7554/eLife.57212

subject

Has Abstract

pub_date

2020-09-11 00:00:00

issn

2050-084X

pii

57212

journal_volume

9

pub_type

杂志文章

相关文献

eLife文献大全
  • Inhibition of protein synthesis in M1 of monkeys disrupts performance of sequential movements guided by memory.

    abstract::The production of action sequences is a fundamental aspect of motor skills. To examine whether primary motor cortex (M1) is involved in maintenance of sequential movements, we trained two monkeys (Cebus apella) to perform two sequential reaching tasks. In one task, sequential movements were instructed by visual cues, ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.53038

    authors: Ohbayashi M

    更新日期:2020-02-10 00:00:00

  • A new answer to old questions.

    abstract::Sudden changes in the level of a coenzyme called NADPH might be the underlying cause of aging in cells. ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.00515

    authors: Barral Y

    更新日期:2013-02-05 00:00:00

  • Ceapins are a new class of unfolded protein response inhibitors, selectively targeting the ATF6α branch.

    abstract::The membrane-bound transcription factor ATF6α plays a cytoprotective role in the unfolded protein response (UPR), required for cells to survive ER stress. Activation of ATF6α promotes cell survival in cancer models. We used cell-based screens to discover and develop Ceapins, a class of pyrazole amides, that block ATF6...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11878

    authors: Gallagher CM,Garri C,Cain EL,Ang KK,Wilson CG,Chen S,Hearn BR,Jaishankar P,Aranda-Diaz A,Arkin MR,Renslo AR,Walter P

    更新日期:2016-07-20 00:00:00

  • The yellow gene influences Drosophila male mating success through sex comb melanization.

    abstract::Drosophila melanogaster males perform a series of courtship behaviors that, when successful, result in copulation with a female. For over a century, mutations in the yellow gene, named for its effects on pigmentation, have been known to reduce male mating success. Prior work has suggested that yellow influences mating...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.49388

    authors: Massey JH,Chung D,Siwanowicz I,Stern DL,Wittkopp PJ

    更新日期:2019-10-15 00:00:00

  • Bugs battle stress from hot blood.

    abstract::A heat exchange mechanism in the head of kissing bugs helps to prevent stress and regulate their temperature while they feed on warm blood. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.33035

    authors: Benoit JB,Denlinger DL

    更新日期:2017-11-21 00:00:00

  • Augmented curation of clinical notes from a massive EHR system reveals symptoms of impending COVID-19 diagnosis.

    abstract::Understanding temporal dynamics of COVID-19 symptoms could provide fine-grained resolution to guide clinical decision-making. Here, we use deep neural networks over an institution-wide platform for the augmented curation of clinical notes from 77,167 patients subjected to COVID-19 PCR testing. By contrasting Electroni...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.58227

    authors: Wagner T,Shweta F,Murugadoss K,Awasthi S,Venkatakrishnan AJ,Bade S,Puranik A,Kang M,Pickering BW,O'Horo JC,Bauer PR,Razonable RR,Vergidis P,Temesgen Z,Rizza S,Mahmood M,Wilson WR,Challener D,Anand P,Liebers M,Doct

    更新日期:2020-07-07 00:00:00

  • The Caenorhabditis elegans protein SAS-5 forms large oligomeric assemblies critical for centriole formation.

    abstract::Centrioles are microtubule-based organelles crucial for cell division, sensing and motility. In Caenorhabditis elegans, the onset of centriole formation requires notably the proteins SAS-5 and SAS-6, which have functional equivalents across eukaryotic evolution. Whereas the molecular architecture of SAS-6 and its role...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.07410

    authors: Rogala KB,Dynes NJ,Hatzopoulos GN,Yan J,Pong SK,Robinson CV,Deane CM,Gönczy P,Vakonakis I

    更新日期:2015-05-29 00:00:00

  • A muscle-epidermis-glia signaling axis sustains synaptic specificity during allometric growth in Caenorhabditis elegans.

    abstract::Synaptic positions underlie precise circuit connectivity. Synaptic positions can be established during embryogenesis and sustained during growth. The mechanisms that sustain synaptic specificity during allometric growth are largely unknown. We performed forward genetic screens in C. elegans for regulators of this proc...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.55890

    authors: Fan J,Ji T,Wang K,Huang J,Wang M,Manning L,Dong X,Shi Y,Zhang X,Shao Z,Colón-Ramos DA

    更新日期:2020-04-07 00:00:00

  • Rap2 and TNIK control Plexin-dependent tiled synaptic innervation in C. elegans.

    abstract::During development, neurons form synapses with their fate-determined targets. While we begin to elucidate the mechanisms by which extracellular ligand-receptor interactions enhance synapse specificity by inhibiting synaptogenesis, our knowledge about their intracellular mechanisms remains limited. Here we show that Ra...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.38801

    authors: Chen X,Shibata AC,Hendi A,Kurashina M,Fortes E,Weilinger NL,MacVicar BA,Murakoshi H,Mizumoto K

    更新日期:2018-07-31 00:00:00

  • Type I interferon underlies severe disease associated with Junín virus infection in mice.

    abstract::Junín virus (JUNV) is one of five New World mammarenaviruses (NWMs) that causes fatal hemorrhagic disease in humans and is the etiological agent of Argentine hemorrhagic fever (AHF). The pathogenesis underlying AHF is poorly understood; however, a prolonged, elevated interferon-α (IFN-α) response is associated with a ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.55352

    authors: Hickerson BT,Sefing EJ,Bailey KW,Van Wettere AJ,Penichet ML,Gowen BB

    更新日期:2020-05-26 00:00:00

  • Importin-9 wraps around the H2A-H2B core to act as nuclear importer and histone chaperone.

    abstract::We report the crystal structure of nuclear import receptor Importin-9 bound to its cargo, the histones H2A-H2B. Importin-9 wraps around the core, globular region of H2A-H2B to form an extensive interface. The nature of this interface coupled with quantitative analysis of deletion mutants of H2A-H2B suggests that the N...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.43630

    authors: Padavannil A,Sarkar P,Kim SJ,Cagatay T,Jiou J,Brautigam CA,Tomchick DR,Sali A,D'Arcy S,Chook YM

    更新日期:2019-03-11 00:00:00

  • High throughput in vivo functional validation of candidate congenital heart disease genes in Drosophila.

    abstract::Genomic sequencing has implicated large numbers of genes and de novo mutations as potential disease risk factors. A high throughput in vivo model system is needed to validate gene associations with pathology. We developed a Drosophila-based functional system to screen candidate disease genes identified from Congenital...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.22617

    authors: Zhu JY,Fu Y,Nettleton M,Richman A,Han Z

    更新日期:2017-01-20 00:00:00

  • Chemical structure-guided design of dynapyrazoles, cell-permeable dynein inhibitors with a unique mode of action.

    abstract::Cytoplasmic dyneins are motor proteins in the AAA+ superfamily that transport cellular cargos toward microtubule minus-ends. Recently, ciliobrevins were reported as selective cell-permeable inhibitors of cytoplasmic dyneins. As is often true for first-in-class inhibitors, the use of ciliobrevins has in part been limit...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.25174

    authors: Steinman JB,Santarossa CC,Miller RM,Yu LS,Serpinskaya AS,Furukawa H,Morimoto S,Tanaka Y,Nishitani M,Asano M,Zalyte R,Ondrus AE,Johnson AG,Ye F,Nachury MV,Fukase Y,Aso K,Foley MA,Gelfand VI,Chen JK,Carter AP,Kapo

    更新日期:2017-05-19 00:00:00

  • Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias.

    abstract::The phylogenetic placement of the morphologically simple placozoans is crucial to understanding the evolution of complex animal traits. Here, we examine the influence of adding new genomes from placozoans to a large dataset designed to study the deepest splits in the animal phylogeny. Using site-heterogeneous substitu...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.36278

    authors: Laumer CE,Gruber-Vodicka H,Hadfield MG,Pearse VB,Riesgo A,Marioni JC,Giribet G

    更新日期:2018-10-30 00:00:00

  • A molecular portrait of maternal sepsis from Byzantine Troy.

    abstract::Pregnancy complications are poorly represented in the archeological record, despite their importance in contemporary and ancient societies. While excavating a Byzantine cemetery in Troy, we discovered calcified abscesses among a woman's remains. Scanning electron microscopy of the tissue revealed 'ghost cells', result...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.20983

    authors: Devault AM,Mortimer TD,Kitchen A,Kiesewetter H,Enk JM,Golding GB,Southon J,Kuch M,Duggan AT,Aylward W,Gardner SN,Allen JE,King AM,Wright G,Kuroda M,Kato K,Briggs DE,Fornaciari G,Holmes EC,Poinar HN,Pepperell CS

    更新日期:2017-01-10 00:00:00

  • The benefits of treating undetectable tumors.

    abstract::Cancer prevention is predicted to result in more positive therapeutic outcomes than post-diagnostic interventions, and so may be a viable option for future personalized medicine. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.09713

    authors: Komarova NL

    更新日期:2015-08-05 00:00:00

  • Resolving rates of mutation in the brain using single-neuron genomics.

    abstract::Whether somatic mutations contribute functional diversity to brain cells is a long-standing question. Single-neuron genomics enables direct measurement of somatic mutation rates in human brain and promises to answer this question. A recent study (Upton et al., 2015) reported high rates of somatic LINE-1 element (L1) r...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.12966

    authors: Evrony GD,Lee E,Park PJ,Walsh CA

    更新日期:2016-02-22 00:00:00

  • Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila.

    abstract::Contrary to dogma, evolutionarily young and dynamic genes can encode essential functions. We find that evolutionarily dynamic ZAD-ZNF genes, which encode the most abundant class of insect transcription factors, are more likely to encode essential functions in Drosophila melanogaster than ancient, conserved ZAD-ZNF gen...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.63368

    authors: Kasinathan B,Colmenares SU 3rd,McConnell H,Young JM,Karpen GH,Malik HS

    更新日期:2020-11-10 00:00:00

  • Circular RNA biogenesis can proceed through an exon-containing lariat precursor.

    abstract::Pervasive expression of circular RNA is a recently discovered feature of eukaryotic gene expression programs, yet its function remains largely unknown. The presumed biogenesis of these RNAs involves a non-canonical 'backsplicing' event. Recent studies in mammalian cell culture posit that backsplicing is facilitated by...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.07540

    authors: Barrett SP,Wang PL,Salzman J

    更新日期:2015-06-09 00:00:00

  • Multi-enhancer transcriptional hubs confer phenotypic robustness.

    abstract::We previously showed in Drosophila melanogaster embryos that low-affinity Ultrabithorax (Ubx)-responsive shavenbaby (svb) enhancers drive expression using localized transcriptional environments and that active svb enhancers on different chromosomes tended to colocalize (Tsai et al., 2017). Here, we test the hypothesis...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.45325

    authors: Tsai A,Alves MR,Crocker J

    更新日期:2019-07-11 00:00:00

  • The Ndc80 complex bridges two Dam1 complex rings.

    abstract::Strong kinetochore-microtubule attachments are essential for faithful segregation of sister chromatids during mitosis. The Dam1 and Ndc80 complexes are the main microtubule binding components of the Saccharomyces cerevisiae kinetochore. Cooperation between these two complexes enhances kinetochore-microtubule coupling ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.21069

    authors: Kim JO,Zelter A,Umbreit NT,Bollozos A,Riffle M,Johnson R,MacCoss MJ,Asbury CL,Davis TN

    更新日期:2017-02-13 00:00:00

  • Extensive ribosome and RF2 rearrangements during translation termination.

    abstract::Protein synthesis ends when a ribosome reaches an mRNA stop codon. Release factors (RFs) decode the stop codon, hydrolyze peptidyl-tRNA to release the nascent protein, and then dissociate to allow ribosome recycling. To visualize termination by RF2, we resolved a cryo-EM ensemble of E. coli 70S•RF2 structures at up to...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.46850

    authors: Svidritskiy E,Demo G,Loveland AB,Xu C,Korostelev AA

    更新日期:2019-09-12 00:00:00

  • Layer 2/3 pyramidal cells in the medial prefrontal cortex moderate stress induced depressive behaviors.

    abstract::Major depressive disorder (MDD) is a prevalent illness that can be precipitated by acute or chronic stress. Studies of patients with Wolfram syndrome and carriers have identified Wfs1 mutations as causative for MDD. The medial prefrontal cortex (mPFC) is known to be involved in depression and behavioral resilience, al...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.08752

    authors: Shrestha P,Mousa A,Heintz N

    更新日期:2015-09-15 00:00:00

  • The MAP kinase pathway coordinates crossover designation with disassembly of synaptonemal complex proteins during meiosis.

    abstract::Asymmetric disassembly of the synaptonemal complex (SC) is crucial for proper meiotic chromosome segregation. However, the signaling mechanisms that directly regulate this process are poorly understood. Here we show that the mammalian Rho GEF homolog, ECT-2, functions through the conserved RAS/ERK MAP kinase signaling...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.12039

    authors: Nadarajan S,Mohideen F,Tzur YB,Ferrandiz N,Crawley O,Montoya A,Faull P,Snijders AP,Cutillas PR,Jambhekar A,Blower MD,Martinez-Perez E,Harper JW,Colaiacovo MP

    更新日期:2016-02-27 00:00:00

  • The leak channel NALCN controls tonic firing and glycolytic sensitivity of substantia nigra pars reticulata neurons.

    abstract::Certain neuron types fire spontaneously at high rates, an ability that is crucial for their function in brain circuits. The spontaneously active GABAergic neurons of the substantia nigra pars reticulata (SNr), a major output of the basal ganglia, provide tonic inhibition of downstream brain areas. A depolarizing 'leak...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.15271

    authors: Lutas A,Lahmann C,Soumillon M,Yellen G

    更新日期:2016-05-13 00:00:00

  • Blue light-induced LOV domain dimerization enhances the affinity of Aureochrome 1a for its target DNA sequence.

    abstract::The design of synthetic optogenetic tools that allow precise spatiotemporal control of biological processes previously inaccessible to optogenetic control has developed rapidly over the last years. Rational design of such tools requires detailed knowledge of allosteric light signaling in natural photoreceptors. To und...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.11860

    authors: Heintz U,Schlichting I

    更新日期:2016-01-12 00:00:00

  • The transcriptional response to tumorigenic polarity loss in Drosophila.

    abstract::Loss of polarity correlates with progression of epithelial cancers, but how plasma membrane misorganization drives oncogenic transcriptional events remains unclear. The polarity regulators of the Drosophila Scribble (Scrib) module are potent tumor suppressors and provide a model for mechanistic investigation. RNA prof...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.03189

    authors: Bunker BD,Nellimoottil TT,Boileau RM,Classen AK,Bilder D

    更新日期:2015-02-26 00:00:00

  • Transverse sinus injections drive robust whole-brain expression of transgenes.

    abstract::Convenient, efficient and fast whole-brain delivery of transgenes presents a persistent experimental challenge in neuroscience. Recent advances demonstrate whole-brain gene delivery by retro-orbital injection of virus, but slow and sparse expression and the large injection volumes required make this approach cumbersom...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.53639

    authors: Hamodi AS,Martinez Sabino A,Fitzgerald ND,Moschou D,Crair MC

    更新日期:2020-05-18 00:00:00

  • Marked synergy by vertical inhibition of EGFR signaling in NSCLC spheroids shows SOS1 is a therapeutic target in EGFR-mutated cancer.

    abstract::Drug treatment of 3D cancer spheroids more accurately reflects in vivo therapeutic responses compared to adherent culture studies. In EGFR-mutated lung adenocarcinoma, EGFR-TKIs show enhanced efficacy in spheroid cultures. Simultaneous inhibition of multiple parallel RTKs further enhances EGFR-TKI effectiveness. We sh...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.58204

    authors: Theard PL,Sheffels E,Sealover NE,Linke AJ,Pratico DJ,Kortum RL

    更新日期:2020-09-08 00:00:00

  • Ribosome biogenesis restricts innate immune responses to virus infection and DNA.

    abstract::Ribosomes are universally important in biology and their production is dysregulated by developmental disorders, cancer, and virus infection. Although presumed required for protein synthesis, how ribosome biogenesis impacts virus reproduction and cell-intrinsic immune responses remains untested. Surprisingly, we find t...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.49551

    authors: Bianco C,Mohr I

    更新日期:2019-12-16 00:00:00