Skin proteomics - analysis of the extracellular matrix in health and disease.

Abstract:

INTRODUCTION:The skin protects the human body from external insults and regulates water and temperature homeostasis. A highly developed extracellular matrix (ECM) supports the skin and instructs its cell functions. Reduced functionality of the ECM is often associated with skin diseases that cause physical impairment and also have implications on social interactions and quality of life of affected individuals. AREAS COVERED:With a focus on the skin ECM we discuss how mass spectrometry (MS)-based proteomic approaches first contributed to establishing skin protein inventories and then facilitated elucidation of molecular functions and disease mechanisms. EXPERT OPINION:MS-based proteomic approaches have significantly contributed to our understanding of skin pathophysiology, but also revealed the challenges in assessing the skin ECM. The numerous posttranslational modifications of ECM proteins, like glycosylation, crosslinking, oxidation, and proteolytic maturation in disease settings can be difficult to tackle and remain understudied. Increased ease of handling of LC-MS/MS systems and automated/streamlined data analysis pipelines together with the accompanying increased usage of LC-MS/MS approaches will ensure that in the coming years MS-based proteomic approaches will continue to play a vital part in skin disease research. They will facilitate the elucidation of molecular disease mechanisms and, ultimately, identification of new druggable targets.

journal_name

Expert Rev Proteomics

authors

Dengjel J,Bruckner-Tuderman L,Nyström A

doi

10.1080/14789450.2020.1773261

subject

Has Abstract

pub_date

2020-05-01 00:00:00

pages

377-391

issue

5

eissn

1478-9450

issn

1744-8387

journal_volume

17

pub_type

杂志文章
  • Unravelling the biology of chromatin in health and cancer using proteomic approaches.

    abstract:INTRODUCTION:Chromatin remodeling complexes play important roles in the control of genome regulation in both normal and diseased states, and are therefore critical components for the regulation of epigenetic states in cells. Given the role epigenetics plays in cancer, for example, chromatin remodeling complexes are rou...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1374860

    authors: Eubanks CG,Dayebgadoh G,Liu X,Washburn MP

    更新日期:2017-10-01 00:00:00

  • MALDI imaging mass spectrometry and analysis of endogenous peptides.

    abstract::In recent years, MALDI imaging mass spectrometry (MALDI-IMS) has developed as a promising tool to investigate the spatial distribution of biomolecules in intact tissue specimens. Ion densities of various molecules can be displayed as heat maps while preserving anatomical structures. In this short review, an overview o...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2013.814939

    authors: Chatterji B,Pich A

    更新日期:2013-08-01 00:00:00

  • Emerging protein array technologies for proteomics.

    abstract::Numerous efforts have been made to understand fundamental biology of diseases based on gene expression. However, the relationship between gene expression and onset of disease often remains obscure. The great advances in protein microarrays allow us to investigate this unclear question through protein profiles, which a...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.12.67

    authors: Lee JR,Magee DM,Gaster RS,LaBaer J,Wang SX

    更新日期:2013-02-01 00:00:00

  • Dissecting phosphorylation networks: lessons learned from yeast.

    abstract::Protein phosphorylation continues to be regarded as one of the most important post-translational modifications found in eukaryotes and has been implicated in key roles in the development of a number of human diseases. In order to elucidate roles for the 518 human kinases, phosphorylation has routinely been studied usi...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.11.64

    authors: Mok J,Zhu X,Snyder M

    更新日期:2011-12-01 00:00:00

  • Improved understanding of gene expression regulation using systems biology.

    abstract::This article reviews the current state of systems biology approaches, including the experimental tools used to generate 'omic' data and computational frameworks to interpret this data. Through illustrative examples, systems biology approaches to understand gene expression and gene expression regulation are discussed. ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.6.915

    authors: Kuczenski RS,Aggarwal K,Lee KH

    更新日期:2005-12-01 00:00:00

  • Transcriptional control and transcriptomic analysis of lipid metabolism in skin barrier formation and atopic dermatitis (AD).

    abstract::Introduction: Atopic dermatitis (AD) is a multifactorial ailment associated with barrier breach and intense systemic inflammation. Several studies over the years have shown the complex interplay of a large number of factors in governing the progression and outcome of AD. In addition to the diverse types of AD resultin...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1646128

    authors: Bhattacharya N,Ganguli-Indra G,Indra AK

    更新日期:2019-08-01 00:00:00

  • Understanding type 1 diabetes through proteomics.

    abstract:INTRODUCTION:Auto-immunity against pancreatic beta-cells leads to an absolute shortage of the hormone insulin, resulting in hyperglycemia and the onset of type 1 diabetes (T1D). Proteomic approaches have been used to elucidate the mechanisms of beta-cell dysfunction and death. Areas covered: In the present review, we d...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1345633

    authors: Crèvecoeur I,Vig S,Mathieu C,Overbergh L

    更新日期:2017-07-01 00:00:00

  • Tissue and serum proteomic profiling for diagnostic and prognostic bladder cancer biomarkers.

    abstract::A panel of biomarkers for the early detection of bladder cancer has not yet been identified. Many different molecules, including DNA, RNA or proteins have been reported but none have provided adequate sensitivity for a single-tier screening test or a test to replace cystoscopy. Therefore, multimarker panels are discus...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.82

    authors: Schwamborn K,Gaisa NT,Henkel C

    更新日期:2010-12-01 00:00:00

  • Protein biomarkers for subtyping breast cancer and implications for future research.

    abstract:INTRODUCTION:Breast cancer subtypes are currently defined by a combination of morphologic, genomic, and proteomic characteristics. These subtypes provide a molecular portrait of the tumor that aids diagnosis, prognosis, and treatment escalation/de-escalation options. Gene expression signatures describing intrinsic brea...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1421071

    authors: Mueller C,Haymond A,Davis JB,Williams A,Espina V

    更新日期:2018-02-01 00:00:00

  • Helicobacter pylori immunoproteomics in gastric cancer and gastritis of the carcinoma phenotype.

    abstract::Helicobacter pylori infection is linked to the development of gastric cancer. Atrophic body gastritis is considered the first important step in the histogenesis of such neoplasia. H. pylori infection is involved in the induction of atrophic body gastritis, but documentation of H. pylori infection is difficult because ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.5

    authors: Lahner E,Bernardini G,Santucci A,Annibale B

    更新日期:2010-04-01 00:00:00

  • Shining a light on defective autophagy by proteomics approaches: implications for neurodegenerative illnesses.

    abstract::Introduction: Autophagy is one of the most conserved clearance systems through which eukaryotes manage to handle dysfunctional and excess organelles and macromolecules. This catabolic process has not only a role in the maintenance of basal turnover of cellular components, but it is also essential in cells adaptation t...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2019.1691919

    authors: Di Domenico F,Zuliani I,Tramutola A

    更新日期:2019-01-01 00:00:00

  • Multidimensional protein identification technology: current status and future prospects.

    abstract::Protein profiling using high-throughput tandem mass spectrometry has become a powerful method for analyzing changes in global protein expression patterns in cells and tissues as a function of developmental, physiologic and disease processes. This review summarizes the utility and practical application of multidimensio...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.1.27

    authors: Kislinger T,Emili A

    更新日期:2005-01-01 00:00:00

  • Global views of proteasome-mediated degradation by mass spectrometry.

    abstract::Introduction: Degradation of proteins by cellular proteasomes is critical for the fidelity of protein homeostasis and proper cell function. Indeed, perturbations in proteasome function, as well as the degradation of specific substrates, are associated with a variety of human diseases. Yet, monitoring and analyzing pro...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1645601

    authors: Javitt A,Merbl Y

    更新日期:2019-07-19 00:00:00

  • Does O-GlcNAc play a role in neurodegenerative diseases?

    abstract::There are several lines of evidence that the modification of proteins by cytosolic- and nuclear-specific O-linked N-acetylglucosamine (O-GlcNAc) glycosylation is closely related to neuropathologies, particularly Alzheimer's disease. Several neuronal proteins have been identified as being modified with O-GlcNAc; these ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.2.265

    authors: Lefebvre T,Guinez C,Dehennaut V,Beseme-Dekeyser O,Morelle W,Michalski JC

    更新日期:2005-04-01 00:00:00

  • Proteomics of proteasome complexes and ubiquitinated proteins.

    abstract::Ubiquitin-proteasome-mediated protein degradation is central to the regulation of many important biological processes, including cell cycle progression, apoptosis and DNA repair. Recognition and degradation of ubiquitinated substrates by the 26S proteasome is tightly regulated to maintain normal cell growth. Disruptio...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.4.5.649

    authors: Wang X,Guerrero C,Kaiser P,Huang L

    更新日期:2007-10-01 00:00:00

  • Human saliva proteome analysis and disease biomarker discovery.

    abstract::Human saliva is an attractive body fluid for disease diagnosis and prognosis because saliva testing is simple, safe, low-cost and noninvasive. Comprehensive analysis and identification of the proteomic content in human whole and ductal saliva will not only contribute to the understanding of oral health and disease pat...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.4.4.531

    authors: Hu S,Loo JA,Wong DT

    更新日期:2007-08-01 00:00:00

  • Complementary methods to assist subcellular fractionation in organellar proteomics.

    abstract::Organellar proteomics aims to describe the full complement of proteins of subcellular structures and organelles. When compared with whole-cell or whole-tissue proteomes, the more focused results from subcellular proteomic studies have yielded relatively simpler datasets from which biologically relevant information can...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.5.4.603

    authors: Gauthier DJ,Lazure C

    更新日期:2008-08-01 00:00:00

  • An update on the routine application of MALDI-TOF MS in clinical microbiology.

    abstract::Introduction: Matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) has entered clinical diagnostics and is today a generally accepted and integral part of the workflow for microbial identification. MALDI-TOF MS identification systems received approval from national and internatio...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1645603

    authors: Welker M,Van Belkum A,Girard V,Charrier JP,Pincus D

    更新日期:2019-08-01 00:00:00

  • Proximity ligation assays: a recent addition to the proteomics toolbox.

    abstract::An essential skill for every researcher is to learn how to select and apply the most appropriate methods for the questions they are trying to answer. With the extensive variety of methods available, it is increasingly important to scrutinize the advantages and disadvantages of these techniques prior to making a decisi...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/epr.10.10

    authors: Weibrecht I,Leuchowius KJ,Clausson CM,Conze T,Jarvius M,Howell WM,Kamali-Moghaddam M,Söderberg O

    更新日期:2010-06-01 00:00:00

  • CSF analysis for protein biomarker identification in patients with leptomeningeal metastases from CNS lymphoma.

    abstract:INTRODUCTION:Leptomeningeal metastases (LM) from lymphoma remain a difficult complication for oncologist due to the high incidence in morbidity and mortality. Early diagnostic and initiation of treatment are essential to prevent neurological deterioration. Areas covered: In this review, several proteomic approaches are...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2017.1307106

    authors: Galicia N,Dégano R,Díez P,González-González M,Góngora R,Ibarrola N,Fuentes M

    更新日期:2017-04-01 00:00:00

  • The impact of microgravity-based proteomics research.

    abstract::Proteomics is performed in microgravity research in order to determine protein alterations occurring qualitatively and quantitatively, when single cells or whole organisms are exposed to real or simulated microgravity. To this purpose, antibody-dependent (Western blotting, flow cytometry, Luminex(®) technology) and an...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1586/14789450.2014.926221

    authors: Grimm D,Pietsch J,Wehland M,Richter P,Strauch SM,Lebert M,Magnusson NE,Wise P,Bauer J

    更新日期:2014-08-01 00:00:00

  • Mass spectrometric approaches for characterizing bacterial proteomes.

    abstract::The emergence of advanced liquid chromatography mass spectrometry technologies for characterizing very complex mixtures of proteins has greatly propelled the field of proteomics, the goal of which is the simultaneous examination of all the proteins expressed by an organism. This research area represents a paradigm shi...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.1.4.433

    authors: VerBerkmoes NC,Connelly HM,Pan C,Hettich RL

    更新日期:2004-12-01 00:00:00

  • Solvent interaction analysis as a proteomic approach to structure-based biomarker discovery and clinical diagnostics.

    abstract::Proteins have several measurable features in biological fluids that may change under pathological conditions. The current disease biomarker discovery is mostly based on protein concentration in the sample as the measurable feature. Changes in protein structures, such as post-translational modifications and in protein-...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1586/14789450.2016.1116945

    authors: Zaslavsky BY,Uversky VN,Chait A

    更新日期:2016-01-01 00:00:00

  • Targeted proteomics of solid cancers: from quantification of known biomarkers towards reading the digital proteome maps.

    abstract::The concept of personalized medicine includes novel protein biomarkers that are expected to improve the early detection, diagnosis and therapy monitoring of malignant diseases. Tissues, biofluids, cell lines and xenograft models are the common sources of biomarker candidates that require verification of clinical value...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2015.1094381

    authors: Pernikářová V,Bouchal P

    更新日期:2015-01-01 00:00:00

  • Effects of preanalytical variables on peptide and protein measurements in human serum and plasma: implications for clinical proteomics.

    abstract::There is a wealth of knowledge in the field of in vitro diagnostics with regard to preanalytical variables and their impact on the determination of peptide and protein analytes in human serum and plasma. This information is applicable to clinical proteomics investigations, which utilize the same sample types. Studies ...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.3.4.409

    authors: Rai AJ,Vitzthum F

    更新日期:2006-08-01 00:00:00

  • Detecting peptidic drugs, drug candidates and analogs in sports doping: current status and future directions.

    abstract::With the growing availability of mature systems and strategies in biotechnology and the continuously expanding knowledge of cellular processes and involved biomolecules, human sports drug testing has become a considerably complex field in the arena of analytical chemistry. Proving the exogenous origin of peptidic drug...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1586/14789450.2014.965159

    authors: Thevis M,Thomas A,Schänzer W

    更新日期:2014-12-01 00:00:00

  • Colorectal cancer biomarker discovery and validation using LC-MS/MS-based proteomics in blood: truth or dare?

    abstract::Globally, colorectal cancer (CRC) is the third most common malignant neoplasm. However, highly sensitive, specific, noninvasive tests that allow CRC diagnosis at an early stage are still needed. As circulatory blood reflects the physiological status of an individual and/or the disease status for several disorders, eff...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2014.905743

    authors: Reumer A,Maes E,Mertens I,Cho WC,Landuyt B,Valkenborg D,Schoofs L,Baggerman G

    更新日期:2014-08-01 00:00:00

  • The role of mass spectrometry in the characterization of biologic protein products.

    abstract:INTRODUCTION:Mass spectrometry (MS) is widely used in the characterization of biomolecules including peptide and protein therapeutics. These biotechnology products have seen rapid growth over the past few decades and continue to dominate the global pharmaceutical market. Advances in MS instrumentation and techniques ha...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1080/14789450.2018.1469982

    authors: Rathore D,Faustino A,Schiel J,Pang E,Boyne M,Rogstad S

    更新日期:2018-05-01 00:00:00

  • Regulation of gene expression: probing DNA-protein interactions in vivo and in vitro.

    abstract::Tremendous efforts have been put together over the last several years to complete the entire sequencing of the human genome. As we enter the proteomic era, when the major aim is understanding which gene encodes which protein, the time has also come to identify their precise function inside the astonishing signaling ne...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章,评审

    doi:10.1586/14789450.2.5.705

    authors: Vigneault F,Guérin SL

    更新日期:2005-10-01 00:00:00

  • The role of proteomics in assessing beta-cell dysfunction and death in type 1 diabetes.

    abstract::Introduction: Type 1 diabetes (T1D) is characterized by autoimmune-induced dysfunction and destruction of the pancreatic beta cells. Unfortunately, this process is poorly understood, and the current best treatment for type 1 diabetes is the administration of exogenous insulin. To better understand these mechanisms and...

    journal_title:Expert review of proteomics

    pub_type: 杂志文章

    doi:10.1080/14789450.2019.1634548

    authors: Nakayasu ES,Qian WJ,Evans-Molina C,Mirmira RG,Eizirik DL,Metz TO

    更新日期:2019-07-01 00:00:00