Nonomuraea terrae sp. nov., isolated from arid soil.

Abstract:

:During the course of isolating rare actinobacteria from unexplored habitats, strain CH32T was obtained from an arid soil sample in eastern Anatolia, Turkey. Polyphasic characterization and comprehensive genome analyses showed that the strain is a member of the genus Nonomuraea and it is closely related to Nonomuraea gerenzanensis ATCC 39727T, Nonomuraea polychroma DSM 43925T and Nonomuraea maritima FXJ7.203T with gene identity level of 98.7%, 98.2% and 98.1%, respectively. The whole-cell hydrolysates contain meso-diaminopimelic acid as diagnostic diaminoacid and glucose, ribose, galactose, mannose and madurose as whole cell sugars. The predominant menaquinones are MK-9(H4), MK-9(H6) and MK-9(H2) while MK-9 exists as minor component. The polar lipid profile consists of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, glycolipid, glycophospholipids, phospholipids and unidentified lipids. The major cellular fatty acids are iso-C16:0 and C17:0 10-methyl. The total genome size is about 9.6 Mb and the G + C content is 71.0%. The genome contains biosynthetic gene clusters encoding for terpenes, siderophores, a type III polyketide synthase, a non-ribosomal polypeptide synthetase and a bacteriocin. The genome-based comparisons of the strain with its phylogenetic neighbours, as indicated by digital DNA-DNA hybridization and average nucleotide identity analyses, reveal that strain CH32T (= JCM 33876T = KCTC 49368T) is a novel member of the genus Nonomuraea, for which Nonomuraea terrae sp. nov. is proposed.

journal_name

Arch Microbiol

journal_title

Archives of microbiology

authors

Ay H

doi

10.1007/s00203-020-01941-9

subject

Has Abstract

pub_date

2020-10-01 00:00:00

pages

2197-2205

issue

8

eissn

0302-8933

issn

1432-072X

pii

10.1007/s00203-020-01941-9

journal_volume

202

pub_type

杂志文章
  • Neorhizobium lilium sp. nov., an endophytic bacterium isolated from Lilium pumilum bulbs in Hebei province.

    abstract::A novel gram-negative, aerobic, non-spore-forming, rod-shaped and non-nitrogen fixing bacterium named strain 24NRT was isolated from wild Lilium pumilum bulbs in Fuping, Baoding City, Hebei province, PR China. The 16S rRNA gene sequences of strains 24NRT showed the highest similarity to Neorhizobium alkalisoli DSM 218...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-019-01774-1

    authors: Liu L,Shi S,Liang L,Xu L,Chi M,Zhang X,Li L

    更新日期:2020-04-01 00:00:00

  • Autoinduction of bacterial luciferase. Occurrence, mechanism and significance.

    abstract::The synthesis of the luminous system of the marine luminous bacterium Photobacterium fischeri is subject to a complex, self-regulated control system called autoinduction. The bacteria produce an autoinducer which accumulates in the medium at a constant rate (as a function of cell growth). When autoinducer reaches a cr...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00446657

    authors: Nealson KH

    更新日期:1977-02-04 00:00:00

  • Characterization and expression of genes from the RubisCO gene cluster of the chemoautotrophic symbiont of Solemya velum: cbbLSQO.

    abstract::Chemoautotrophic endosymbionts residing in Solemya velum gills provide this shallow water clam with most of its nutritional requirements. The cbb gene cluster of the S. velum symbiont, including cbbL and cbbS, which encode the large and small subunits of the carbon-fixing enzyme ribulose 1,5-bisphosphate carboxylase/o...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-004-0689-x

    authors: Schwedock J,Harmer TL,Scott KM,Hektor HJ,Seitz AP,Fontana MC,Distel DL,Cavanaugh CM

    更新日期:2004-09-01 00:00:00

  • Fatty-acid-displaced transcriptional repressor, a conserved regulator of cytochrome P450 102 transcription in Bacillus species.

    abstract::Bacillus subtilis strain 168 encodes two flavocytochromes P450, Cyp102A2 and Cyp102A3. The cyp102A3 gene is preceded by, and organized in an operon with, a gene for a transcriptional regulator, encoded by fatR. The paralogous gene, cyp102A2, is most likely transcribed as a mono-cistronic message. We show that fatR enc...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030100350

    authors: Gustafsson MC,Palmer CN,Wolf CR,von Wachenfeldt C

    更新日期:2001-12-01 00:00:00

  • Localization of aggregation substances of Enterococcus faecalis after induction by sex pheromones. An ultrastructural comparison using immuno labelling, transmission and high resolution scanning electron microscopic techniques.

    abstract::The distribution of sex pheromone induced aggregation substance was studied on the cell surface of various Enterococcus faecalis strains. In the accompanying paper we have shown that the aggregation substance appears as a layer of hairlike structures. Using direct and indirect immunogold technique, transmission electr...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00454864

    authors: Wanner G,Formanek H,Galli D,Wirth R

    更新日期:1989-01-01 00:00:00

  • Changes in the cell wall glycoprotein composition of Candida albicans associated to the inhibition of germ tube formation by EDTA.

    abstract::Hyphal development in Candida albicans was blocked by EDTA. This effect was not due to a general growth inhibition since the chelator did not affect protein and DNA synthesis. Recovery of mycelial growth was observed when EDTA-grown cells were incubated at 37 degrees C in EDTA-free medium. High-molecular-weight mannop...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00307769

    authors: Gil ML,Casanova M,Martínez JP

    更新日期:1994-01-01 00:00:00

  • Close genetic relationship between Nitrobacter hamburgensis nitrite oxidoreductase and Escherichia coli nitrate reductases.

    abstract::The nitrite oxidoreductase (NOR) from the facultative nitrite-oxidizing bacterium Nitrobacter hamburgensis X14 was investigated genetically. In order to develop a probe for the gene norB, the N-terminal amino acid sequence of the NOR beta-subunit (NorB) was determined. Based on that amino acid sequence, an oligonucleo...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00245305

    authors: Kirstein K,Bock E

    更新日期:1993-01-01 00:00:00

  • Isolation and characterization of a unique protease from sporulating cells of Bacillus subtilis.

    abstract::Two proteases, designated I and II, have been isolated from sporulating cells of Bacillus subtilis. They were partially purified by ammonium sulfate fractionation, Sephadex chromatography and affinity columns. Protease I was found to be similar to an already characterized B. subtilis protease. Protease II is trypsin-l...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00425256

    authors: Srivastava OP,Aronson AI

    更新日期:1981-05-01 00:00:00

  • Carotenoid glucosides and menaquinones from the gliding bacterium Herpetosiphon giganteus Hp a2.

    abstract::The gliding bacterium Herpetosiphon giganteus Hp a2 was shown to contain gamma-carotene, one monoglucosyloxy and two new diglucosyloxy carotenoids with a x-O-acyldiglucosyloxy carotenoid as main component. Flexirubin-like pigments could not be detected in this organism. As in the Myxobacterales and Cytophagales (Klein...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00413098

    authors: Kleinig H,Reichenbach H

    更新日期:1977-04-01 00:00:00

  • Factors affecting transcriptional regulation of the formate-hydrogen-lyase pathway of Escherichia coli.

    abstract::The regulatory elements involved in expression of the gene (fdhF) for the selenopolypeptide of formate dehydrogenase and of a gene (or transcriptional unit) (hyd) specifically responsible for the formation of the gas-evolving hydrogenase (hydrogenase 3) in Escherichia coli were investigated. Formate (or a product of i...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00429646

    authors: Birkmann A,Zinoni F,Sawers G,Böck A

    更新日期:1987-06-01 00:00:00

  • Quorum sensing molecules production by nosocomial and soil isolates Acinetobacter baumannii.

    abstract::Acinetobacter species remain alive in hospitals on various surfaces, both dry and moist, forming an important source of hospital infections. These bacteria are naturally resistant to many antibiotic classes. Although the role of the quorum sensing system in regulating the virulence factors of Acinetobacter species has...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-017-1408-8

    authors: Erdönmez D,Rad AY,Aksöz N

    更新日期:2017-12-01 00:00:00

  • A small heat-shock protein confers stress tolerance and stabilizes thylakoid membrane proteins in cyanobacteria under oxidative stress.

    abstract::Small heat-shock proteins are molecular chaperones that bind and prevent aggregation of nonnative proteins. They also associate with membranes. In this study, we show that the small heat-shock protein HspA plays a protective role under oxidative stress in the cyanobacterium Synechococcus elongatus strain ECT16-1, whic...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-009-0457-z

    authors: Sakthivel K,Watanabe T,Nakamoto H

    更新日期:2009-04-01 00:00:00

  • Microfilament bundles in antheridial nuclei of Achlya ambisexualis E 87.

    abstract::This is the first report of intranuclear microfilaments within gametangial nuclei of oömycetous fungi. Longitudinal sections of four to six microfilaments were frequently observed in meiotic antheridial nuclei of Achlya ambisexualis. Each microfilament measured approximately 7--10 nm in diameter. Spindle tubules (25 n...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00427876

    authors: Ellzey J,Huizar E,Yanez D

    更新日期:1976-02-01 00:00:00

  • Analysis of the expression and function of the sigmaB-dependent general stress regulon of Bacillus subtilis during slow growth.

    abstract::Glucose-limited continuous cultures were used to analyze sigmaB activity at decreasing growth rates. Expression of the sigmaB-dependent genes gsiB and ctc started to increase at a growth rate of 0.2 h-1, and both genes were induced approximately fivefold at a growth rate of 0.1 h-1 as compared to expression at the max...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030050731

    authors: Schweder T,Kolyschkow A,Völker U,Hecker M

    更新日期:1999-05-01 00:00:00

  • Understanding the host-adapted state of Citrobacter rodentium by transcriptomic analysis.

    abstract::Citrobacter rodentium (Cr) is a mouse pathogen that mimics many aspects of enteropathogenic Escherichia coli infections including producing attaching and effacing (A/E) lesions. Host-adapted (HA) Cr cells that are shed at the peak of infection have been reported to be hyper-infective. The exact mechanism underlying th...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-016-1191-y

    authors: Smith AD,Yan X,Chen C,Dawson HD,Bhagwat AA

    更新日期:2016-05-01 00:00:00

  • Tubular structures of Vibrio psychroerythrus.

    abstract::The marine bacterium Vibrio psychoerythrus, an obligate psychrophile, contains uniformly dense rod-shaped organelles 10-15 nm wide and up to 1.3 mum long. These structures were frequently seen crossing the septum of dividing cells. ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00427869

    authors: D'Aoust JY,Kushner DJ

    更新日期:1976-02-01 00:00:00

  • Metagenomic analysis reveals the influences of milk containing antibiotics on the rumen microbes of calves.

    abstract::Milk containing antibiotics is used as cost-effective feed for calves, which may lead to antibiotic residues-associated food safety problems. This study aims to investigate the influence of antibiotics on rumen microbes. Through metagenomic sequencing, the rumen microbial communities of calves fed with pasteurized mil...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-016-1311-8

    authors: Li W,Han Y,Yuan X,Wang G,Wang Z,Pan Q,Gao Y,Qu Y

    更新日期:2017-04-01 00:00:00

  • Characteration of RNA synthesized during germination of Blastocladia ramosa Zoospores.

    abstract::The synthesis of RNA was studied during the synchronous germination of Blastocladia ramosa zoospores. Comparison of RNA synthesis during germination of B. ramosa and Blastocladiella emersonii zoospores revealed that B. ramosa has a longer lag time before RNA synthesis is initiated and, in addition, the rate of RNA syn...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00446529

    authors: Jaworski AJ,Torzilli AP

    更新日期:1975-12-31 00:00:00

  • Improved multiplex PCR primers for rapid identification of coagulase-negative staphylococci.

    abstract::Coagulase-negative staphylococci (CNS) are opportunistic pathogens that are currently emerging as causative agents of human disease. Though CNS are widespread in the clinic and food, their precise identification at species level is important. Here, using 16S rRNA sequencing, 55 staphylococcal isolates were identified ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-017-1415-9

    authors: Kim J,Hong J,Lim JA,Heu S,Roh E

    更新日期:2018-01-01 00:00:00

  • Microbiological and chemical profiles of elephant grass inoculated with and without Lactobacillus plantarum and Pediococcus acidilactici.

    abstract::The study was conducted to evaluate the microbiological and chemical profiles of elephant grass inoculated with and without different wild strains of lactic acid bacteria. Silage was prepared of four treatments and one control with three replicates as control (EKC, adding 2 ml/kg sterilizing water), Lactobacillus plan...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-017-1447-1

    authors: Shah AA,Xianjun Y,Zhihao D,Junfeng L,Sao T

    更新日期:2018-03-01 00:00:00

  • Noviherbaspirillum galbum sp. nov., a bacterium isolated from soil.

    abstract::A Gram-stain-negative, aerobic, non-motile and yellow-colored bacterium, strain 17J57-3 T, was isolated from soil collected in Pyeongchang city, Korea. Phylogenetic analyses based on 16S rRNA gene sequences revealed that strain 17J57-3 T formed a distinct lineage within the family Oxalobacteraceae (order Burkholderial...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-020-02076-7

    authors: Park Y,Maeng S,Lee SE,Han JH,Lee YK,Oh J,Jigden B,Kang JH,Kim MK

    更新日期:2020-10-15 00:00:00

  • An examination of the diversity of a novel Campylobacter reservoir.

    abstract::The diversity of eukaryotic populations, in particular protozoa, in the water supplies of intensively reared broilers has not been previously studied. This important food-rearing environment was screened for the molecular diversity of eukaryotes by the analysis of PCR-amplified 18S rRNA. DNA was extracted from filtere...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-006-0119-3

    authors: Snelling WJ,McKenna JP,Hack CJ,Moore JE,Dooley JS

    更新日期:2006-07-01 00:00:00

  • Characterization and structural properties of the major biliproteins of Anabaena sp.

    abstract::Studies are presented of the biliproteins of Anabaena sp. This filamentous cyanobacterium contains three major biliproteins. Whereas two of these, C-phycocyanin and allophycocyanin, are common to all cyanobacteria, the third, phycoerythrocyanin (gammamax approximately 568 nm) has hitherto not been described and its di...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00416970

    authors: Bryant DA,Glazer AN,Eiserling FA

    更新日期:1976-10-11 00:00:00

  • Detailed biosynthetic pathway to decaprenoxanthin diglucoside in Corynebacterium glutamicum and identification of novel intermediates.

    abstract::Carotenogenic mutants of Corynebacterium glutamicum were analyzed for their carotenoid content. Mutant MV10 accumulated the same carotenoids as the wild-type, decaprenoxanthin, decaprenoxanthin monoglucoside, and (2R,6R,2'R,6'R)-decaprenoxanthin di-(beta-D)-glucoside, but in three-fold higher amounts. In addition, dec...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s002030100315

    authors: Krubasik P,Takaichi S,Maoka T,Kobayashi M,Masamoto K,Sandmann G

    更新日期:2001-09-01 00:00:00

  • Decoding the role of hypothetical protein All3255 of Anabaena PCC7120 in heavy metal stress management in Escherichia coli.

    abstract::Cadmium is a non-essential toxic heavy metal for organisms, including plants and cyanobacteria. Cadmium resistance transporters involved in resistance of cells against various toxicants such as drugs and effluxes cytotoxic compounds from cells. However, cadmium resistance-associated protein (CadD) has never been repor...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-017-1462-2

    authors: Singh PK,Tang M,Kumar S,Shrivastava AK

    更新日期:2018-04-01 00:00:00

  • Metabolic products of microorganisms. 185. The anthraquinones of the Aspergillus glaucus group. I. Occurrence, isolation, identification and antimicrobial activity.

    abstract::The occurrence of emodin, erythroglaucin, physcion, physcion-9-anthrone, questin, catenarin, and catenarin-8-methyl ether in different species of the Aspergillus glaucus group (genus Eurotium) was investigated. So far catenarin-8-methyl ether (1, 4, 6-trihydroxy-8-methoxy-3-methylanthraquinone) has not been described ...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00409924

    authors: Anke H,Kolthoum I,Zähner H,Laatsch H

    更新日期:1980-07-01 00:00:00

  • The occurrence of teichoic acids in streptomycetes.

    abstract::The presence of teichoic acids in a number of streptomycetes led to the conclusion that these biopolymers were widely spread in genus Streptomyces. The nature of the teichoic acid present in the mycelium was determined by extracting it with 10% trichloroacetic acid, precipitating it with ethanol and identifying the pr...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00421893

    authors: Naumova IB,Kuznetsov VD,Kudrina KS,Bezzubenkova AP

    更新日期:1980-05-01 00:00:00

  • Arginine catabolism in Aphanocapsa 6308.

    abstract::The catabolic products of arginine metabolism were observed in Aphanocapsa 6308, a unicellular cyanobacterium, by thin layer chromatography of growth media, by limiting growth conditions, and by enzymatic analysis. Of the organic, nitrogenous compounds examined, only arginine supported growth in CO2-free media. The ex...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/BF00406066

    authors: Weathers PJ,Chee HL,Allen MM

    更新日期:1978-07-01 00:00:00

  • Characterization of a mercury-reducing Bacillus cereus strain isolated from the Pulicat Lake sediments, south east coast of India.

    abstract::Pulicat Lake sediments are often severely polluted with the toxic heavy metal mercury. Several mercury-resistant strains of Bacillus species were isolated from the sediments and all the isolates exhibited broad spectrum resistance (resistance to both organic and inorganic mercuric compounds). Plasmid curing assay show...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-006-0088-6

    authors: Kannan SK,Mahadevan S,Krishnamoorthy R

    更新日期:2006-04-01 00:00:00

  • The complete mitochondrial genome of the entomopathogenic fungus Metarhizium anisopliae var. anisopliae: gene order and trn gene clusters reveal a common evolutionary course for all Sordariomycetes, while intergenic regions show variation.

    abstract::The mitochondrial genome (mtDNA) of the entomopathogenic fungus Metarhizium anisopliae var. anisopliae, with a total size of 24,673 bp, was one of the smallest known mtDNAs of Pezizomycotina. It contained the 14 typical genes coding for proteins related to oxidative phosphorylation, the two rRNA genes, a single intron...

    journal_title:Archives of microbiology

    pub_type: 杂志文章

    doi:10.1007/s00203-006-0104-x

    authors: Ghikas DV,Kouvelis VN,Typas MA

    更新日期:2006-06-01 00:00:00