Genome sequence analysis of a novel Enterobacter cloacae phage, Ec_L1, belonging to the genus Eclunavirus.

Abstract:

:Phages, viruses targeting bacteria, have potential therapeutic applications in the control of infections with antibiotic-resistant bacteria. In this study, an Enterobacter cloacae phage, Ec_L1, was isolated from sewage sludge samples collected from a hospital. The genome of phage Ec_L1 consists of 51,894 bp with 48.24% G+C content. Nineteen of the 85 putative proteins encoded by this phage have known functions, and no rRNA or tRNA genes were found. Comparative analysis of genome sequences suggested that phage Ec_L1 should be considered a member of the subfamily Tunavirinae, which includes T1-like phages. According to the International Committee on Taxonomy of Viruses (ICTV), phage Ec_L1 is the type member of the new genus "Eclunavirus", whose name was derived from Ec_L1.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Ren H,Li Z,Li X,Wang L,Xu Y

doi

10.1007/s00705-020-04672-w

subject

Has Abstract

pub_date

2020-08-01 00:00:00

pages

1929-1932

issue

8

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-020-04672-w

journal_volume

165

pub_type

杂志文章
  • Detection and genome characterization of a novel member of the genus Polerovirus from zucchini (Cucurbita pepo) in China.

    abstract::Here, we report a novel member of the genus Polerovirus, zucchini aphid-borne yellows virus (ZABYV), which was identified in zucchini grown for seed production in the Xinjiang Uygur Autonomous Region, China. The complete nucleotide sequence of the ZABYV genome was determined and found to be 5,792 nucleotides in length...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-019-04217-w

    authors: Peng B,Kang B,Wu H,Liu L,Liu L,Fei Z,Hong N,Gu Q

    更新日期:2019-08-01 00:00:00

  • Genetic grouping for the isolates of avian infectious bronchitis virus in Taiwan.

    abstract::In order to differentiate recent isolates of avian infectious bronchitis virus (IBV) in Taiwan, polymerase chain reaction (PCR), restriction fragment length polymorphism (RFLP), and direct sequencing methods were used to type 25 IBV Taiwan isolates. Two conserved sequences that flank the hypervariable region I (HVR I)...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01718291

    authors: Wang CH,Tsai CT

    更新日期:1996-01-01 00:00:00

  • Analysis of vaccine-virus-associated rabies cases in red foxes (Vulpes vulpes) after oral rabies vaccination campaigns in Germany and Austria.

    abstract::To eradicate rabies in foxes, almost 97 million oral rabies vaccine baits have been distributed in Germany and Austria since 1983 and 1986, respectively. Since 2007, no terrestrial cases have been reported in either country. The most widely used oral rabies vaccine viruses in these countries were SAD (Street Alabama D...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0408-7

    authors: Müller T,Bätza HJ,Beckert A,Bunzenthal C,Cox JH,Freuling CM,Fooks AR,Frost J,Geue L,Hoeflechner A,Marston D,Neubert A,Neubert L,Revilla-Fernández S,Vanek E,Vos A,Wodak E,Zimmer K,Mettenleiter TC

    更新日期:2009-01-01 00:00:00

  • Serotypic characterization of outer capsid spike protein VP4 of vervet monkey rotavirus SA11 strain.

    abstract::The vervet monkey rotavirus SA11, a prototype strain of group A rotaviruses, has been shown to possess VP7 serotype 3 specificity but its neutralization specificity with regard to the other outer capsid protein VP4 has not been elucidated. We thus determined its VP4 specificity by two-way cross-neutralization with gui...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050371

    authors: Hoshino Y,Jones RW,Kapikian AZ

    更新日期:1998-01-01 00:00:00

  • Spatial distribution of orally administered viral fusolin protein in the insect midgut and possible synergism between fusolin and digestive proteases to disrupt the midgut peritrophic matrix.

    abstract::Oral inoculation of entomopoxvirus spindles, microstructures composed of fusolin protein, causes disruption of the peritrophic matrix (PM), a physical barrier against microbe infection, in the insect midgut. Although the atomic structure of fusolin has been determined, little has been directly elucidated of the mechan...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-4013-5

    authors: Mitsuhashi W,Shimura S,Miyamoto K,Sugimoto TN

    更新日期:2019-01-01 00:00:00

  • The isolation and partial characterization of a highly pathogenic herpesvirus from the harbor seal (Phoca vitulina).

    abstract::This report describes the first isolation and partial characterization of a herpesvirus from the harbor seal (Phoca vitulina). The virus was isolated during a disease outbreak in a group of young seals nursed in a seal orphanage in The Netherlands. Almost half of the seals died with symptoms of acute pneumonia and foc...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309828

    authors: Osterhaus AD,Yang H,Spijkers HE,Groen J,Teppema JS,van Steenis G

    更新日期:1985-01-01 00:00:00

  • Comparison of the nucleoprotein genes of a chicken and a mink influenza A H 10 virus.

    abstract::The base sequences of the coding region of the nucleoprotein (NP) genes of two H 10 influenza A viruses, one avian (virus N) and one mink virus, have been determined by primer extension. When the NP genes and the NP sequences derived from the only open reading frame of the two H 10 viruses were compared with those of ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01319816

    authors: Reinhardt U,Scholtissek C

    更新日期:1988-01-01 00:00:00

  • Expression of a synthetic rust fungal virus cDNA in yeast.

    abstract::Mycoviruses are viruses that infect fungi. Recently, mycovirus-like RNAs were sequenced from the fungus Phakopsora pachyrhizi, the causal agent of soybean rust. One of the RNAs appeared to represent a novel mycovirus and was designated Phakopsora pachyrhizi virus 2383 (PpV2383). The genome of PpV2383 resembles Sacchar...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2639-0

    authors: Cooper B,Campbell KB,Garrett WM

    更新日期:2016-01-01 00:00:00

  • Efficacy of quantitative RT-PCR for detection of the nucleoprotein gene from different porcine rubulavirus strains.

    abstract::Blue-eye disease is an emergent viral swine infection caused by porcine rubulavirus (PoRV). We have developed a qRT-PCR method to detect and quantify expression of the nucleoprotein gene for different PoRV strains. The limit of detection for this assay was 10(2) copies of synthetic RNA. Viral RNA from PoRV was detecta...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-013-1672-0

    authors: Rivera-Benitez JF,García-Contreras Adel C,Reyes-Leyva J,Hernández J,Sánchez-Betancourt JI,Ramírez-Mendoza H

    更新日期:2013-09-01 00:00:00

  • Nucleotide sequences of the helper component-proteinase genes of aphid transmissible and non-transmissible isolates of turnip mosaic virus.

    abstract::We have compared nucleotide sequences of the helper component-proteinase (HC-Pro) coding region of aphid transmissible (isolate 1) and non-transmissible (isolate 31) isolates of turnip mosaic virus (TuMV). HC-Pro coding regions of both TuMV isolates 1 and 31 were 1,374 nucleotide long. The nucleotide sequence homology...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01379077

    authors: Nakashima H,Sako N,Hori K

    更新日期:1993-01-01 00:00:00

  • Development of a direct blood-based PCR system to detect BLV provirus using CoCoMo primers.

    abstract::Bovine leukemia virus (BLV), the etiologic agent of enzootic bovine leucosis, has caused pandemic outbreaks worldwide. Because transcription of the BLV is quickly blocked after infection, detecting integrated provirus at host genome is an important method of identifying whether an animal is infected. The aim of the pr...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2806-y

    authors: Takeshima SN,Watanuki S,Ishizaki H,Matoba K,Aida Y

    更新日期:2016-06-01 00:00:00

  • Electron microscopical study of initial and final stages of fowl plague virus-replication in chick embryo cells.

    abstract::Cellular uptake of fowl plague virus occurs 10-30 minutes after inoculation of chick embryo cells. The penetration of the virions is by pinocytosis (viropexis); fusion with the cellular membrane has not been observed. After pinocytosis the virions become gradually disintegrated. Budding of newly formed virions from th...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317537

    authors: Reinacher M,Weiss E

    更新日期:1975-01-01 00:00:00

  • Occurrence and role of an early antigen and evidence for transforming ability of porcine circovirus.

    abstract::By means of indirect immunofluorescence assay (IFA) using natural swine immune serum and hyperimmune serum from rabbits infected with porcine circovirus (PCV), a PCV antigen was detected present prior to the onset of viral and cellular DNA synthesis in nucleoli of cells of synchronized and growth stimulated infected P...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01384343

    authors: Tischer I,Peters D,Pociuli S

    更新日期:1995-01-01 00:00:00

  • The growth of African horse-sickness virus in embryonated hen eggs and the transmission of virus by Culicoides variipennis Coquillett (Diptera, Ceratopogonidae).

    abstract::Seven-day-old embryonated hen eggs were infected with African Horse Sickness virus by the yolk sac and intravenous routes. Virus reached a high titre in the blood of infected embryos. Culicoides variipennis midges which took a blood meal from infected eggs became infected with virus, and after 7 days at 26 degrees - 2...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01347975

    authors: Boorman J,Mellor PS,Penn M,Jennings M

    更新日期:1975-01-01 00:00:00

  • A single substitution in amino acid 184 of the NP protein alters the replication and pathogenicity of H5N1 avian influenza viruses in chickens.

    abstract::Changes in the NP gene of H5N1 highly pathogenic avian influenza (HPAI) viruses have previously been shown to affect viral replication, alter host gene expression levels and affect mean death times in infected chickens. Five amino acids at positions 22, 184, 400, 406, and 423 were different between the two recombinant...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0399-4

    authors: Wasilenko JL,Sarmento L,Pantin-Jackwood MJ

    更新日期:2009-01-01 00:00:00

  • Suppression of humoral antibody formation against sheep red blood cells by infections with HSV-2 and the influence of mouse cytomegalovirus. Brief report.

    abstract::HSV-2 infections suppress the antibody response to HSV-1 but do not impair the mouse cytomegalo virus (MCMV) antibody generating system. In contrast, the sheep red blood cell (SRBC) IgM response is impaired by preinfections with HSV-2 but not with HSV-1. From the time kinetics of this suppression it can be concluded t...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01310741

    authors: Nick S,Metzger B,Jonsić S,Falke D

    更新日期:1987-01-01 00:00:00

  • Complete genome sequence of a novel bromovirus infecting elderberry (Sambucus nigra L.) in the Czech Republic.

    abstract::The genus Bromovirus currently contains six species whose members have relatively narrow host ranges. In the present work, a new bromovirus infecting elderberry (Sambucus nigra L.) is reported. dsRNA was purified and sequenced by next-generation sequencing, and with minimal additional completion by Sanger sequencing, ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3629-1

    authors: Šafářová D,Candresse T,Navrátil M

    更新日期:2018-02-01 00:00:00

  • Genetic variability of the coat protein sequence of pea seed-borne mosaic virus isolates and the current relationship between phylogenetic placement and resistance groups.

    abstract::Nucleotide sequences of complete or partial coat protein (CP) genes were determined for 11 isolates of pea seed-borne mosaic virus (PSbMV) from Australia and one from China, and compared with known sequences of 20 other isolates. On phylogenetic analysis, the isolates from Australia and China grouped into 2 of 3 clade...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1002-3

    authors: Wylie SJ,Coutts BA,Jones RA

    更新日期:2011-07-01 00:00:00

  • Effect of amino acid sequence variations at position 149 on the fusogenic activity of the subtype B avian metapneumovirus fusion protein.

    abstract::The entry of enveloped viruses into host cells requires the fusion of viral and cell membranes. These membrane fusion reactions are mediated by virus-encoded glycoproteins. In the case of avian metapneumovirus (aMPV), the fusion (F) protein alone can mediate virus entry and induce syncytium formation in vitro. To inve...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2524-x

    authors: Yun B,Gao Y,Liu Y,Guan X,Wang Y,Qi X,Gao H,Liu C,Cui H,Zhang Y,Gao Y,Wang X

    更新日期:2015-10-01 00:00:00

  • Nanovirus-alphasatellite complex identified in Vicia cracca in the Rhône delta region of France.

    abstract::Nanoviruses are multi-component plant-infecting single-stranded DNA viruses. Using a viral metagenomics-informed approach, a new nanovirus and two associated alphasatellite molecules have been identified in an uncultivated asymptomatic Vicia cracca plant in the Rhône region of France. This novel nanovirus genome inclu...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3634-4

    authors: Gallet R,Kraberger S,Filloux D,Galzi S,Fontes H,Martin DP,Varsani A,Roumagnac P

    更新日期:2018-03-01 00:00:00

  • Pathogenicity and vaccine efficacy of a thymidine kinase-deficient mutant of feline herpesvirus type 1 in cats.

    abstract::We constructed a recombinant feline herpesvirus type 1 (FHV-1) which was deleted in a defined region (450 bp) within the thymidine kinase (TK) gene (C7301dlTK) [Yokoyama et al. (1995) J Vet Med Sci 57: 709-714]. In this report, we carried out two experiments to assess the pathogenicity and vaccine efficacy of the reco...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01718312

    authors: Yokoyama N,Maeda K,Tohya Y,Kawaguchi Y,Shin YS,Ono M,Ishiguro S,Fujikawa Y,Mikami T

    更新日期:1996-01-01 00:00:00

  • Distinct usage of three C-type lectins by Japanese encephalitis virus: DC-SIGN, DC-SIGNR, and LSECtin.

    abstract::Infection with West Nile virus and dengue virus, two mosquito-borne flaviviruses, is enhanced by two calcium-dependent lectins: dendritic cell-specific intercellular adhesion molecule-3-grabbing nonintegrin (DC-SIGN), and its related molecule (DC-SIGNR). The present study examined the relationship between Japanese enc...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-014-2042-2

    authors: Shimojima M,Takenouchi A,Shimoda H,Kimura N,Maeda K

    更新日期:2014-08-01 00:00:00

  • Humoral and secretory antibody responses to immunization with low and high dosage split influenza virus vaccine.

    abstract::Tri (n-butyl) phosphate (TNBP)-split vaccine containing 6400 CCA units of influenza virus A/Aichi/68 (H3N2) was given intramuscularly to a group of volunteers. The changes in serum haemagglutination-inhibiting (HI) and nasal wash neutralizing antibody were measured, and the results compared with that of volunteers giv...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01320555

    authors: Ruben FL,Potter CW,Stuart-Harris CH

    更新日期:1975-01-01 00:00:00

  • Bovine papular stomatitis virus and pseudocowpox virus coinfection in dairy calves in Japan.

    abstract::Two cases of coinfection with bovine papular stomatitis virus (BPSV) and pseudocowpox virus (PCPV) in dairy calves in Tochigi Prefecture, Japan, are reported. Sequences of BPSV and PCPV were simultaneously detected in the same polymerase chain reaction (PCR) amplicons, which were obtained from the DNA of two dairy cal...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-020-04792-3

    authors: Shimizu K,Badr Y,Okada A,Inoshima Y

    更新日期:2020-11-01 00:00:00

  • Double-stranded-RNA-specific adenosine deaminase 1 (ADAR1) is proposed to contribute to the adaptation of equine infectious anemia virus from horses to donkeys.

    abstract::Equine infectious anemia virus (EIAV) is a member of the genus Lentivirus of the family Retroviridae. Horses are the most susceptible equids to EIAV infection and are therefore the primary hosts of this virus. In contrast, infected donkeys do not develop clinically active equine infectious anemia (EIA). This phenomeno...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2951-3

    authors: Tang YD,Zhang X,Na L,Wang XF,Fu LH,Zhu CH,Wang X,Zhou JH

    更新日期:2016-10-01 00:00:00

  • Phylogenetic and geographic analysis of fowl adenovirus field strains isolated from poultry in Poland.

    abstract::Fowl adenoviruses (FAdVs) are widely distributed in chickens in Poland and throughout the world. FAdV infections have been reported in the United States, Australia, Europe, and the Mediterranean basin. Detection of FAdVs strains is very important from the epidemiological point of view and for monitoring disease outbre...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2635-4

    authors: Niczyporuk JS

    更新日期:2016-01-01 00:00:00

  • Bovine papillomavirus E5 oncogene stimulates DNA synthesis in C127 fibroblasts without general effects on growth factor responsive protein phosphorylations.

    abstract::The bovine papillomavirus (BPV) transforming gene E5 is thought to modulate growth factor receptor function leading to a stimulation of growth factor signal transduction pathways. However, the influence of E5 on the range of receptor mediated changes in protein phosphorylation has not been addressed. We looked for the...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050131

    authors: Wheeler TT,O'Banion MK,Colasurdo AM,Young DA

    更新日期:1997-01-01 00:00:00

  • A virus related to soybean mosaic virus from Pinellia ternata in China and its comparison with local soybean SMV isolates.

    abstract::A potyvirus isolated from Pinellia ternata in China was characterised and shown to be related to Soybean mosaic virus (SMV). The virus was pathogenic on P. ternata and some soybean cultivars, whereas the local soybean SMV isolate HH5 did not infect P. ternata. Western blot experiments demonstrated a serological relati...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0184-8

    authors: Chen J,Zheng HY,Lin L,Adams MJ,Antoniw JF,Zhao MF,Shang YF,Chen JP

    更新日期:2004-02-01 00:00:00

  • Proteomic analysis of monkey kidney LLC-MK2 cells infected with a Thai strain Zika virus.

    abstract::Zika virus (ZIKV) has been endemic in Southeast Asian countries for several years, but the presence of the virus has not been associated with significant outbreaks of infection unlike other countries around the world where the Asian lineage ZIKV was introduced recently. However, few studies have been undertaken using ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-04137-1

    authors: Diteepeng T,Khongwichit S,Paemanee A,Roytrakul S,Smith DR

    更新日期:2019-03-01 00:00:00

  • Blood-based gene expression profile of oxidative stress and antioxidant genes for identifying surrogate markers of liver tissue injury in chronic hepatitis C patients.

    abstract::Oxidative stress is the process by which reactive molecules and free radicals are formed in cells. In this study, we report the blood-based gene expression profile of oxidative stress and antioxidant genes for identifying surrogate markers of liver tissue in chronic hepatitis C (CHC) patients by using real-time PCR. A...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-020-04564-z

    authors: Shahid M,Idrees M,Butt AM,Raza SM,Amin I,Rasul A,Afzal S

    更新日期:2020-04-01 00:00:00