Publisher Correction: MethCORR modelling of methylomes from formalin-fixed paraffin-embedded tissue enables characterization and prognostication of colorectal cancer.

Abstract:

:An amendment to this paper has been published and can be accessed via a link at the top of the paper.

journal_name

Nat Commun

journal_title

Nature communications

authors

Mattesen TB,Rasmussen MH,Sandoval J,Ongen H,Árnadóttir SS,Gladov J,Martinez-Cardus A,de Moura MC,Madsen AH,Laurberg S,Dermitzakis ET,Esteller M,Andersen CL,Bramsen JB

doi

10.1038/s41467-020-16538-5

subject

Has Abstract

pub_date

2020-06-03 00:00:00

pages

2880

issue

1

issn

2041-1723

pii

10.1038/s41467-020-16538-5

journal_volume

11

pub_type

杂志文章,已发布勘误
  • Correct determination of charge transfer state energy from luminescence spectra in organic solar cells.

    abstract::Generation and recombination of electrons and holes in organic solar cells occurs via charge transfer states located at the donor/acceptor interface. The energy of these charge transfer states is a crucial factor for the attainable open-circuit voltage and its correct determination is thus of utmost importance for a d...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-05987-8

    authors: List M,Sarkar T,Perkhun P,Ackermann J,Luo C,Würfel U

    更新日期:2018-09-07 00:00:00

  • Calculating with light using a chip-scale all-optical abacus.

    abstract::Machines that simultaneously process and store multistate data at one and the same location can provide a new class of fast, powerful and efficient general-purpose computers. We demonstrate the central element of an all-optical calculator, a photonic abacus, which provides multistate compute-and-store operation by int...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-01506-3

    authors: Feldmann J,Stegmaier M,Gruhler N,Ríos C,Bhaskaran H,Wright CD,Pernice WHP

    更新日期:2017-11-02 00:00:00

  • Universal structure of transmission eigenchannels inside opaque media.

    abstract::As the desire to explore opaque materials is ordinarily frustrated by multiple scattering of waves, attention has focused on the transmission matrix of the wave field. This matrix gives the fullest account of transmission and conductance and enables the control of the transmitted flux; however, it cannot address the f...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7893

    authors: Davy M,Shi Z,Park J,Tian C,Genack AZ

    更新日期:2015-04-20 00:00:00

  • Mutualism supports biodiversity when the direct competition is weak.

    abstract::A key question of theoretical ecology is which properties of ecosystems favour their stability and help maintaining biodiversity. This question recently reconsidered mutualistic systems, generating intense controversy about the role of mutualistic interactions and their network architecture. Here we show analytically ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14326

    authors: Pascual-García A,Bastolla U

    更新日期:2017-02-24 00:00:00

  • Pyruvate kinase type M2 promotes tumour cell exosome release via phosphorylating synaptosome-associated protein 23.

    abstract::Tumour cells secrete exosomes that are involved in the remodelling of the tumour-stromal environment and promoting malignancy. The mechanisms governing tumour exosome release, however, remain incompletely understood. Here we show that tumour cell exosomes secretion is controlled by pyruvate kinase type M2 (PKM2), whic...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms14041

    authors: Wei Y,Wang D,Jin F,Bian Z,Li L,Liang H,Li M,Shi L,Pan C,Zhu D,Chen X,Hu G,Liu Y,Zhang CY,Zen K

    更新日期:2017-01-09 00:00:00

  • Large meta-analysis of genome-wide association studies identifies five loci for lean body mass.

    abstract::Lean body mass, consisting mostly of skeletal muscle, is important for healthy aging. We performed a genome-wide association study for whole body (20 cohorts of European ancestry with n = 38,292) and appendicular (arms and legs) lean body mass (n = 28,330) measured using dual energy X-ray absorptiometry or bioelectric...

    journal_title:Nature communications

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41467-017-00031-7

    authors: Zillikens MC,Demissie S,Hsu YH,Yerges-Armstrong LM,Chou WC,Stolk L,Livshits G,Broer L,Johnson T,Koller DL,Kutalik Z,Luan J,Malkin I,Ried JS,Smith AV,Thorleifsson G,Vandenput L,Hua Zhao J,Zhang W,Aghdassi A,Åkesson

    更新日期:2017-07-19 00:00:00

  • Cobalt-centred boron molecular drums with the highest coordination number in the CoB16- cluster.

    abstract::The electron deficiency and strong bonding capacity of boron have led to a vast variety of molecular structures in chemistry and materials science. Here we report the observation of highly symmetric cobalt-centered boron drum-like structures of CoB16(-), characterized by photoelectron spectroscopy and ab initio calcul...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9654

    authors: Popov IA,Jian T,Lopez GV,Boldyrev AI,Wang LS

    更新日期:2015-10-12 00:00:00

  • Genetic tagging of active neurons in auditory cortex reveals maternal plasticity of coding ultrasonic vocalizations.

    abstract::Cortical neurons are often functionally heterogeneous even for molecularly defined subtypes. In sensory cortices, physiological responses to natural stimuli can be sparse and vary widely even for neighboring neurons. It is thus difficult to parse out circuits that encode specific stimuli for further experimentation. H...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03183-2

    authors: Tasaka GI,Guenthner CJ,Shalev A,Gilday O,Luo L,Mizrahi A

    更新日期:2018-02-28 00:00:00

  • Modular optimization of multi-gene pathways for fatty acids production in E. coli.

    abstract::Microbial fatty acid-derived fuels have emerged as promising alternatives to petroleum-based transportation fuels. Here we report a modular engineering approach that systematically removed metabolic pathway bottlenecks and led to significant titre improvements in a multi-gene fatty acid metabolic pathway. On the basis...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms2425

    authors: Xu P,Gu Q,Wang W,Wong L,Bower AG,Collins CH,Koffas MA

    更新日期:2013-01-01 00:00:00

  • Electron paramagnetic resonance microscopy using spins in diamond under ambient conditions.

    abstract::Magnetic resonance spectroscopy is one of the most important tools in chemical and bio-medical research. However, sensitivity limitations typically restrict imaging resolution to ~ 10 µm. Here we bring quantum control to the detection of chemical systems to demonstrate high-resolution electron spin imaging using the q...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-017-00466-y

    authors: Simpson DA,Ryan RG,Hall LT,Panchenko E,Drew SC,Petrou S,Donnelly PS,Mulvaney P,Hollenberg LCL

    更新日期:2017-09-06 00:00:00

  • CLIC4 regulates apical exocytosis and renal tube luminogenesis through retromer- and actin-mediated endocytic trafficking.

    abstract::Chloride intracellular channel 4 (CLIC4) is a mammalian homologue of EXC-4 whose mutation is associated with cystic excretory canals in nematodes. Here we show that CLIC4-null mouse embryos exhibit impaired renal tubulogenesis. In both developing and developed kidneys, CLIC4 is specifically enriched in the proximal tu...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms10412

    authors: Chou SY,Hsu KS,Otsu W,Hsu YC,Luo YC,Yeh C,Shehab SS,Chen J,Shieh V,He GA,Marean MB,Felsen D,Ding A,Poppas DP,Chuang JZ,Sung CH

    更新日期:2016-01-20 00:00:00

  • Author Correction: The future of Blue Carbon science.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature communications

    pub_type: 已发布勘误

    doi:10.1038/s41467-019-13126-0

    authors: Macreadie PI,Anton A,Raven JA,Beaumont N,Connolly RM,Friess DA,Kelleway JJ,Kennedy H,Kuwae T,Lavery PS,Lovelock CE,Smale DA,Apostolaki ET,Atwood TB,Baldock J,Bianchi TS,Chmura GL,Eyre BD,Fourqurean JW,Hall-Spencer J

    更新日期:2019-11-08 00:00:00

  • Arctic-Eurasian climate linkage induced by tropical ocean variability.

    abstract::Eurasian continent has experienced cold winters over the past two decades in contrast with Arctic warming. Previous studies have suggested that the cold Eurasian winters are associated with Arctic sea-ice loss, while others attributed them to atmospheric internal variability. However, here we show that the Arctic and ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11359-7

    authors: Matsumura S,Kosaka Y

    更新日期:2019-08-01 00:00:00

  • Behavior control of membrane-less protein liquid condensates with metal ion-induced phase separation.

    abstract::Phase separation of specific biomolecules into liquid droplet-like condensates is a key mechanism to form membrane-less organelles, which spatio-temporally organize diverse biochemical processes in cells. To investigate the working principles of these biomolecular condensates as dynamic reaction centers, precise contr...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-19391-8

    authors: Hong K,Song D,Jung Y

    更新日期:2020-11-03 00:00:00

  • Climate constrains the evolutionary history and biodiversity of crocodylians.

    abstract::The fossil record of crocodylians and their relatives (pseudosuchians) reveals a rich evolutionary history, prompting questions about causes of long-term decline to their present-day low biodiversity. We analyse climatic drivers of subsampled pseudosuchian biodiversity over their 250 million year history, using a comp...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms9438

    authors: Mannion PD,Benson RBJ,Carrano MT,Tennant JP,Judd J,Butler RJ

    更新日期:2015-09-24 00:00:00

  • Cooperative material transport during the early stage of sintering.

    abstract::The complex transport processes contributing to sintering are not yet fully understood, partially because in-situ observations of sintering in three dimensions (3D) are very difficult. Here we report a novel experiment in which monocrystalline copper spheres are first marked with microscopic boreholes drilled using a ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1300

    authors: Grupp R,Nöthe M,Kieback B,Banhart J

    更新日期:2011-01-01 00:00:00

  • Room-temperature superionic-phase nanocrystals synthesized with a twinned lattice.

    abstract::The engineering of nanoscale features enables the properties of solid-state materials to be tuned. Here, we show the tunable preparation of cuprous sulfide nanocrystals ranging in internal structures from single-domain to multi-domain. The synthetic method utilizes in-situ oxidation to grow nanocrystals with a control...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-11229-2

    authors: Gong J,Jain PK

    更新日期:2019-07-23 00:00:00

  • WNT5A is transported via lipoprotein particles in the cerebrospinal fluid to regulate hindbrain morphogenesis.

    abstract::WNTs are lipid-modified proteins that control multiple functions in development and disease via short- and long-range signaling. However, it is unclear how these hydrophobic molecules spread over long distances in the mammalian brain. Here we show that WNT5A is produced by the choroid plexus (ChP) of the developing hi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-09298-4

    authors: Kaiser K,Gyllborg D,Procházka J,Salašová A,Kompaníková P,Molina FL,Laguna-Goya R,Radaszkiewicz T,Harnoš J,Procházková M,Potěšil D,Barker RA,Casado ÁG,Zdráhal Z,Sedláček R,Arenas E,Villaescusa JC,Bryja V

    更新日期:2019-04-02 00:00:00

  • African-centric TP53 variant increases iron accumulation and bacterial pathogenesis but improves response to malaria toxin.

    abstract::A variant at amino acid 47 in human TP53 exists predominantly in individuals of African descent. P47S human and mouse cells show increased cancer risk due to defective ferroptosis. Here, we show that this ferroptotic defect causes iron accumulation in P47S macrophages. This high iron content alters macrophage cytokine...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-14151-9

    authors: Singh KS,Leu JI,Barnoud T,Vonteddu P,Gnanapradeepan K,Lin C,Liu Q,Barton JC,Kossenkov AV,George DL,Murphy ME,Dotiwala F

    更新日期:2020-01-24 00:00:00

  • Inbreeding causes early death in a passerine bird.

    abstract::Inbreeding typically reduces fitness. Related partners may fail to reproduce and any inbred offspring may die early or fail to reproduce themselves. Here we show that inbreeding causes early death in the zebra finch Taeniopygia guttata, and among inbred individuals of the same inbreeding coefficient (F), those that di...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms1870

    authors: Hemmings NL,Slate J,Birkhead TR

    更新日期:2012-05-29 00:00:00

  • Profiling immunoglobulin repertoires across multiple human tissues using RNA sequencing.

    abstract::Profiling immunoglobulin (Ig) receptor repertoires with specialized assays can be cost-ineffective and time-consuming. Here we report ImReP, a computational method for rapid and accurate profiling of the Ig repertoire, including the complementary-determining region 3 (CDR3), using regular RNA sequencing data such as t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16857-7

    authors: Mandric I,Rotman J,Yang HT,Strauli N,Montoya DJ,Van Der Wey W,Ronas JR,Statz B,Yao D,Petrova V,Zelikovsky A,Spreafico R,Shifman S,Zaitlen N,Rossetti M,Ansel KM,Eskin E,Mangul S

    更新日期:2020-06-19 00:00:00

  • Transposable element expression in tumors is associated with immune infiltration and increased antigenicity.

    abstract::Profound global loss of DNA methylation is a hallmark of many cancers. One potential consequence of this is the reactivation of transposable elements (TEs) which could stimulate the immune system via cell-intrinsic antiviral responses. Here, we develop REdiscoverTE, a computational method for quantifying genome-wide T...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-13035-2

    authors: Kong Y,Rose CM,Cass AA,Williams AG,Darwish M,Lianoglou S,Haverty PM,Tong AJ,Blanchette C,Albert ML,Mellman I,Bourgon R,Greally J,Jhunjhunwala S,Chen-Harris H

    更新日期:2019-11-19 00:00:00

  • Asymmetric assembly of high-value α-functionalized organic acids using a biocatalytic chiral-group-resetting process.

    abstract::The preparation of α-functionalized organic acids can be greatly simplified by adopting a protocol involving the catalytic assembly of achiral building blocks. However, the enzymatic assembly of small amino acids and aldehydes to form numerous α-functionalized organic acids is highly desired and remains a significant ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-06241-x

    authors: Song W,Wang JH,Wu J,Liu J,Chen XL,Liu LM

    更新日期:2018-09-19 00:00:00

  • Intertwined dipolar and multipolar order in the triangular-lattice magnet TmMgGaO4.

    abstract::A phase transition is often accompanied by the appearance of an order parameter and symmetry breaking. Certain magnetic materials exhibit exotic hidden-order phases, in which the order parameters are not directly accessible to conventional magnetic measurements. Thus, experimental identification and theoretical unders...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-019-12410-3

    authors: Shen Y,Liu C,Qin Y,Shen S,Li YD,Bewley R,Schneidewind A,Chen G,Zhao J

    更新日期:2019-10-08 00:00:00

  • A cell-based computational model of early embryogenesis coupling mechanical behaviour and gene regulation.

    abstract::The study of multicellular development is grounded in two complementary domains: cell biomechanics, which examines how physical forces shape the embryo, and genetic regulation and molecular signalling, which concern how cells determine their states and behaviours. Integrating both sides into a unified framework is cru...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms13929

    authors: Delile J,Herrmann M,Peyriéras N,Doursat R

    更新日期:2017-01-23 00:00:00

  • Insights into catalysis and regulation of non-canonical ubiquitination and deubiquitination by bacterial deamidase effectors.

    abstract::The bacterial effector MavC catalyzes non-canonical ubiquitination of host E2 enzyme UBE2N without engaging any of the conventional ubiquitination machinery, thereby abolishing UBE2N's function in forming K63-linked ubiquitin (Ub) chains and dampening NF-кB signaling. We now report the structures of MavC in complex wi...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-16587-w

    authors: Wang Y,Zhan Q,Wang X,Li P,Liu S,Gao G,Gao P

    更新日期:2020-06-02 00:00:00

  • Spatial expression analyses of the putative oncogene ciRS-7 in cancer reshape the microRNA sponge theory.

    abstract::Circular RNAs (circRNAs) have recently gained substantial attention in the cancer research field where most, including the putative oncogene ciRS-7 (CDR1as), have been proposed to function as competitive endogenous RNAs (ceRNAs) by sponging specific microRNAs. Here, we report the first spatially resolved cellular expr...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-020-18355-2

    authors: Kristensen LS,Ebbesen KK,Sokol M,Jakobsen T,Korsgaard U,Eriksen AC,Hansen TB,Kjems J,Hager H

    更新日期:2020-09-11 00:00:00

  • BRE/BRCC45 regulates CDC25A stability by recruiting USP7 in response to DNA damage.

    abstract::BRCA2 is essential for maintaining genomic integrity. BRCA2-deficient primary cells are either not viable or exhibit severe proliferation defects. Yet, BRCA2 deficiency contributes to tumorigenesis. It is believed that mutations in genes such as TRP53 allow BRCA2 heterozygous cells to overcome growth arrest when they ...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/s41467-018-03020-6

    authors: Biswas K,Philip S,Yadav A,Martin BK,Burkett S,Singh V,Babbar A,North SL,Chang S,Sharan SK

    更新日期:2018-02-07 00:00:00

  • ROW1 maintains quiescent centre identity by confining WOX5 expression to specific cells.

    abstract::The quiescent centre (QC) in the Arabidopsis root apical meristem is essential for stem cell organization. Here we show that the loss of REPRESSOR OF WUSCHEL1 (ROW1), a PHD domain-containing protein, leads to QC failure, defects in cell differentiation and ectopic expression of WUSCHEL-RELATED HOMEOBOX 5 (WOX5) in cel...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms7003

    authors: Zhang Y,Jiao Y,Liu Z,Zhu YX

    更新日期:2015-01-29 00:00:00

  • Chemical control over the energy-level alignment in a two-terminal junction.

    abstract::The energy-level alignment of molecular transistors can be controlled by external gating to move molecular orbitals with respect to the Fermi levels of the source and drain electrodes. Two-terminal molecular tunnelling junctions, however, lack a gate electrode and suffer from Fermi-level pinning, making it difficult t...

    journal_title:Nature communications

    pub_type: 杂志文章

    doi:10.1038/ncomms12066

    authors: Yuan L,Franco C,Crivillers N,Mas-Torrent M,Cao L,Sangeeth CSS,Rovira C,Veciana J,Nijhuis CA

    更新日期:2016-07-26 00:00:00