Retrocopying expands the functional repertoire of APOBEC3 antiviral proteins in primates.

Abstract:

:Host-virus arms races are inherently asymmetric; viruses evolve much more rapidly than host genomes. Thus, there is high interest in discovering mechanisms by which host genomes keep pace with rapidly evolving viruses. One family of restriction factors, the APOBEC3 (A3) cytidine deaminases, has undergone positive selection and expansion via segmental gene duplication and recombination. Here, we show that new copies of A3 genes have also been created in primates by reverse transcriptase-encoding elements like LINE-1 or endogenous retroviruses via a process termed retrocopying. First, we discovered that all simian primate genomes retain the remnants of an ancient A3 retrocopy: A3I. Furthermore, we found that some New World monkeys encode up to ten additional APOBEC3G (A3G) retrocopies. Some of these A3G retrocopies are transcribed in a variety of tissues and able to restrict retroviruses. Our findings suggest that host genomes co-opt retroelement activity in the germline to create new host restriction factors as another means to keep pace with the rapid evolution of viruses. (163).

journal_name

Elife

journal_title

eLife

authors

Yang L,Emerman M,Malik HS,McLaughlin RN Jnr

doi

10.7554/eLife.58436

subject

Has Abstract

pub_date

2020-06-01 00:00:00

issn

2050-084X

pii

58436

journal_volume

9

pub_type

杂志文章

相关文献

eLife文献大全
  • Evolution: Oxygen and early animals.

    abstract::The biology of sponges provides clues about how early animals may have dealt with low levels of oxygen. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.34756

    authors: Rytkönen KT

    更新日期:2018-02-06 00:00:00

  • Excitatory and inhibitory synapse reorganization immediately after critical sensory experience in a vocal learner.

    abstract::Excitatory and inhibitory synapses are the brain's most abundant synapse types. However, little is known about their formation during critical periods of motor skill learning, when sensory experience defines a motor target that animals strive to imitate. In songbirds, we find that exposure to tutor song leads to elimi...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.37571

    authors: Huang Z,Khaled HG,Kirschmann M,Gobes SM,Hahnloser RH

    更新日期:2018-10-25 00:00:00

  • The discovery and importance of genomic imprinting.

    abstract::The discovery of genomic imprinting by Davor Solter, Azim Surani and co-workers in the mid-1980s has provided a foundation for the study of epigenetic inheritance and the epigenetic control of gene activity and repression, especially during development. It also has shed light on a range of diseases, including both rar...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.42368

    authors: Ferguson-Smith AC,Bourc'his D

    更新日期:2018-10-22 00:00:00

  • Monosynaptic tracing maps brain-wide afferent oligodendrocyte precursor cell connectivity.

    abstract::Neurons form bona fide synapses with oligodendrocyte precursor cells (OPCs), but the circuit context of these neuron to OPC synapses remains incompletely understood. Using monosynaptically-restricted rabies virus tracing of OPC afferents, we identified extensive afferent synaptic inputs to OPCs residing in secondary m...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.49291

    authors: Mount CW,Yalçın B,Cunliffe-Koehler K,Sundaresh S,Monje M

    更新日期:2019-10-18 00:00:00

  • Rat behavior and dopamine release are modulated by conspecific distress.

    abstract::Rats exhibit 'empathy' making them a model to understand the neural underpinnings of such behavior. We show data consistent with these findings, but also that behavior and dopamine (DA) release reflects subjective rather than objective evaluation of appetitive and aversive events that occur to another. We recorded DA ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.38090

    authors: Lichtenberg NT,Lee B,Kashtelyan V,Chappa BS,Girma HT,Green EA,Kantor S,Lagowala DA,Myers MA,Potemri D,Pecukonis MG,Tesfay RT,Walters MS,Zhao AC,Blair RJR,Cheer JF,Roesch MR

    更新日期:2018-11-28 00:00:00

  • Structured inhibitory activity dynamics in new virtual environments.

    abstract::Inhibition plays a powerful role in regulating network excitation and plasticity; however, the activity of defined interneuron types during spatial exploration remain poorly understood. Using two-photon calcium imaging, we recorded hippocampal CA1 somatostatin- and parvalbumin-expressing interneurons as mice performed...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.47611

    authors: Arriaga M,Han EB

    更新日期:2019-10-08 00:00:00

  • Sensorimotor pathway controlling stopping behavior during chemotaxis in the Drosophila melanogaster larva.

    abstract::Sensory navigation results from coordinated transitions between distinct behavioral programs. During chemotaxis in the Drosophila melanogaster larva, the detection of positive odor gradients extends runs while negative gradients promote stops and turns. This algorithm represents a foundation for the control of sensory...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.38740

    authors: Tastekin I,Khandelwal A,Tadres D,Fessner ND,Truman JW,Zlatic M,Cardona A,Louis M

    更新日期:2018-11-22 00:00:00

  • Distinct contributions of the thin and thick filaments to length-dependent activation in heart muscle.

    abstract::The Frank-Starling relation is a fundamental auto-regulatory property of the heart that ensures the volume of blood ejected in each heartbeat is matched to the extent of venous filling. At the cellular level, heart muscle cells generate higher force when stretched, but despite intense efforts the underlying molecular ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.24081

    authors: Zhang X,Kampourakis T,Yan Z,Sevrieva I,Irving M,Sun YB

    更新日期:2017-02-23 00:00:00

  • Individual recognition and the 'face inversion effect' in medaka fish (Oryzias latipes).

    abstract::Individual recognition (IR) is essential for maintaining various social interactions in a group, and face recognition is one of the most specialised cognitive abilities in IR. We used both a mating preference system and an electric shock conditioning experiment to test IR ability in medaka, and found that signals near...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.24728

    authors: Wang MY,Takeuchi H

    更新日期:2017-07-11 00:00:00

  • AMPAR/TARP stoichiometry differentially modulates channel properties.

    abstract::AMPARs control fast synaptic communication between neurons and their function relies on auxiliary subunits, which importantly modulate channel properties. Although it has been suggested that AMPARs can bind to TARPs with variable stoichiometry, little is known about the effect that this stoichiometry exerts on certain...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.53946

    authors: Miguez-Cabello F,Sánchez-Fernández N,Yefimenko N,Gasull X,Gratacòs-Batlle E,Soto D

    更新日期:2020-05-26 00:00:00

  • Patched1 and Patched2 inhibit Smoothened non-cell autonomously.

    abstract::Smoothened (Smo) inhibition by Patched (Ptch) is central to Hedgehog (Hh) signaling. Ptch, a proton driven antiporter, is required for Smo inhibition via an unknown mechanism. Hh ligand binding to Ptch reverses this inhibition and activated Smo initiates the Hh response. To determine whether Ptch inhibits Smo strictly...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.17634

    authors: Roberts B,Casillas C,Alfaro AC,Jägers C,Roelink H

    更新日期:2016-08-23 00:00:00

  • Surface color and predictability determine contextual modulation of V1 firing and gamma oscillations.

    abstract::The integration of direct bottom-up inputs with contextual information is a core feature of neocortical circuits. In area V1, neurons may reduce their firing rates when their receptive field input can be predicted by spatial context. Gamma-synchronized (30-80 Hz) firing may provide a complementary signal to rates, ref...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.42101

    authors: Peter A,Uran C,Klon-Lipok J,Roese R,van Stijn S,Barnes W,Dowdall JR,Singer W,Fries P,Vinck M

    更新日期:2019-02-04 00:00:00

  • Zebrafish macrophage developmental arrest underlies depletion of microglia and reveals Csf1r-independent metaphocytes.

    abstract::Macrophages derive from multiple sources of hematopoietic progenitors. Most macrophages require colony-stimulating factor 1 receptor (CSF1R), but some macrophages persist in the absence of CSF1R. Here, we analyzed mpeg1:GFP-expressing macrophages in csf1r-deficient zebrafish and report that embryonic macrophages emerg...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.53403

    authors: Kuil LE,Oosterhof N,Ferrero G,Mikulášová T,Hason M,Dekker J,Rovira M,van der Linde HC,van Strien PM,de Pater E,Schaaf G,Bindels EM,Wittamer V,van Ham TJ

    更新日期:2020-05-05 00:00:00

  • A survey-based analysis of the academic job market.

    abstract::Many postdoctoral researchers apply for faculty positions knowing relatively little about the hiring process or what is needed to secure a job offer. To address this lack of knowledge about the hiring process we conducted a survey of applicants for faculty positions: the survey ran between May 2018 and May 2019, and r...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.54097

    authors: Fernandes JD,Sarabipour S,Smith CT,Niemi NM,Jadavji NM,Kozik AJ,Holehouse AS,Pejaver V,Symmons O,Bisson Filho AW,Haage A

    更新日期:2020-06-12 00:00:00

  • MicroRNAs down-regulate homologous recombination in the G1 phase of cycling cells to maintain genomic stability.

    abstract::Homologous recombination (HR)-mediated repair of DNA double-strand break (DSB)s is restricted to the post-replicative phases of the cell cycle. Initiation of HR in the G1 phase blocks non-homologous end joining (NHEJ) impairing DSB repair. Completion of HR in G1 cells can lead to the loss-of-heterozygosity (LOH), whic...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.02445

    authors: Choi YE,Pan Y,Park E,Konstantinopoulos P,De S,D'Andrea A,Chowdhury D

    更新日期:2014-04-30 00:00:00

  • Lineage commitment of embryonic cells involves MEK1-dependent clearance of pluripotency regulator Ventx2.

    abstract::During early embryogenesis, cells must exit pluripotency and commit to multiple lineages in all germ-layers. How this transition is operated in vivo is poorly understood. Here, we report that MEK1 and the Nanog-related transcription factor Ventx2 coordinate this transition. MEK1 was required to make Xenopus pluripoten...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.21526

    authors: Scerbo P,Marchal L,Kodjabachian L

    更新日期:2017-06-27 00:00:00

  • Multi-phosphorylation reaction and clustering tune Pom1 gradient mid-cell levels according to cell size.

    abstract::Protein concentration gradients pattern developing organisms and single cells. In Schizosaccharomyces pombe rod-shaped cells, Pom1 kinase forms gradients with maxima at cell poles. Pom1 controls the timing of mitotic entry by inhibiting Cdr2, which forms stable membrane-associated nodes at mid-cell. Pom1 gradients rel...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.45983

    authors: Gerganova V,Floderer C,Archetti A,Michon L,Carlini L,Reichler T,Manley S,Martin SG

    更新日期:2019-05-03 00:00:00

  • Shorter cortical adaptation in dyslexia is broadly distributed in the superior temporal lobe and includes the primary auditory cortex.

    abstract::Studies of the performance of individuals with dyslexia in perceptual tasks suggest that their implicit inference of sound statistics is impaired. Previously, using two-tone frequency discrimination, we found that the effect of previous trials' frequencies on the judgments of individuals with dyslexia decays faster th...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.30018

    authors: Jaffe-Dax S,Kimel E,Ahissar M

    更新日期:2018-02-28 00:00:00

  • Correction: Salt-inducible kinase 3 regulates the mammalian circadian clock by destabilizing PER2 protein.

    abstract:: ...

    journal_title:eLife

    pub_type: 已发布勘误

    doi:10.7554/eLife.66683

    authors: Hayasaka N,Hirano A,Miyoshi Y,Tokuda IT,Yoshitane H,Matsuda J,Fukada Y

    更新日期:2021-01-25 00:00:00

  • Magnesium efflux from Drosophila Kenyon cells is critical for normal and diet-enhanced long-term memory.

    abstract::Dietary magnesium (Mg2+) supplementation can enhance memory in young and aged rats. Memory-enhancing capacity was largely ascribed to increases in hippocampal synaptic density and elevated expression of the NR2B subunit of the NMDA-type glutamate receptor. Here we show that Mg2+ feeding also enhances long-term memory ...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.61339

    authors: Wu Y,Funato Y,Meschi E,Jovanoski KD,Miki H,Waddell S

    更新日期:2020-11-26 00:00:00

  • Sex-specific effects of cooperative breeding and colonial nesting on prosociality in corvids.

    abstract::The investigation of prosocial behavior is of particular interest from an evolutionary perspective. Comparisons of prosociality across non-human animal species have, however, so far largely focused on primates, and their interpretation is hampered by the diversity of paradigms and procedures used. Here, we present the...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.58139

    authors: Horn L,Bugnyar T,Griesser M,Hengl M,Izawa EI,Oortwijn T,Rössler C,Scheer C,Schiestl M,Suyama M,Taylor AH,Vanhooland LC,von Bayern AM,Zürcher Y,Massen JJ

    更新日期:2020-10-20 00:00:00

  • Metabolic profiling during malaria reveals the role of the aryl hydrocarbon receptor in regulating kidney injury.

    abstract::Systemic metabolic reprogramming induced by infection exerts profound, pathogen-specific effects on infection outcome. Here, we detail the host immune and metabolic response during sickness and recovery in a mouse model of malaria. We describe extensive alterations in metabolism during acute infection, and identify in...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.60165

    authors: Lissner MM,Cumnock K,Davis NM,Vilches-Moure JG,Basak P,Navarrete DJ,Allen JA,Schneider D

    更新日期:2020-10-06 00:00:00

  • Shining light on spindle positioning.

    abstract::Optogenetic approaches are leading to a better understanding of the forces that determine the plane of cell division. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.38748

    authors: Serra-Marques A,Dumont S

    更新日期:2018-07-09 00:00:00

  • Externally induced frontoparietal synchronization modulates network dynamics and enhances working memory performance.

    abstract::Cognitive functions such as working memory (WM) are emergent properties of large-scale network interactions. Synchronisation of oscillatory activity might contribute to WM by enabling the coordination of long-range processes. However, causal evidence for the way oscillatory activity shapes network dynamics and behavio...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.22001

    authors: Violante IR,Li LM,Carmichael DW,Lorenz R,Leech R,Hampshire A,Rothwell JC,Sharp DJ

    更新日期:2017-03-14 00:00:00

  • All about the RNA after all.

    abstract::RNA molecules cause the proteins involved in the formation of germ granules to coalesce into liquid droplets. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.24106

    authors: Trcek T,Lehmann R

    更新日期:2017-01-24 00:00:00

  • A gut feeling about arthritis.

    abstract::The gut microbiota of patients recently diagnosed with rheumatoid arthritis is enriched in microbes belonging to the Prevotella genus. ...

    journal_title:eLife

    pub_type: 评论,杂志文章

    doi:10.7554/eLife.01608

    authors: Mathis D

    更新日期:2013-11-05 00:00:00

  • Mechanistic signs of double-barreled structure in a fluoride ion channel.

    abstract::The Fluc family of F(-) ion channels protects prokaryotes and lower eukaryotes from the toxicity of environmental F(-). In bacteria, these channels are built as dual-topology dimers whereby the two subunits assemble in antiparallel transmembrane orientation. Recent crystal structures suggested that Fluc channels conta...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.18767

    authors: Last NB,Kolmakova-Partensky L,Shane T,Miller C

    更新日期:2016-07-23 00:00:00

  • Engineering induction of singular neural rosette emergence within hPSC-derived tissues.

    abstract::Human pluripotent stem cell (hPSC)-derived neural organoids display unprecedented emergent properties. Yet in contrast to the singular neuroepithelial tube from which the entire central nervous system (CNS) develops in vivo, current organoid protocols yield tissues with multiple neuroepithelial units, a.k.a. neural ro...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.37549

    authors: Knight GT,Lundin BF,Iyer N,Ashton LM,Sethares WA,Willett RM,Ashton RS

    更新日期:2018-10-29 00:00:00

  • Deep sampling of Hawaiian Caenorhabditis elegans reveals high genetic diversity and admixture with global populations.

    abstract::Hawaiian isolates of the nematode species Caenorhabditis elegans have long been known to harbor genetic diversity greater than the rest of the worldwide population, but this observation was supported by only a small number of wild strains. To better characterize the niche and genetic diversity of Hawaiian C. elegans a...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.50465

    authors: Crombie TA,Zdraljevic S,Cook DE,Tanny RE,Brady SC,Wang Y,Evans KS,Hahnel S,Lee D,Rodriguez BC,Zhang G,van der Zwagg J,Kiontke K,Andersen EC

    更新日期:2019-12-03 00:00:00

  • Longitudinal analysis of Plasmodium sporozoite motility in the dermis reveals component of blood vessel recognition.

    abstract::Malaria infection starts with injection of Plasmodium sporozoites by an Anopheles mosquito into the skin of the mammalian host. How sporozoites locate and enter a blood vessel is a critical, but poorly understood process. In this study, we examine sporozoite motility and their interaction with dermal blood vessels, us...

    journal_title:eLife

    pub_type: 杂志文章

    doi:10.7554/eLife.07789

    authors: Hopp CS,Chiou K,Ragheb DR,Salman AM,Khan SM,Liu AJ,Sinnis P

    更新日期:2015-08-13 00:00:00