Abstract：
:Despite the relevance of complex root microbial communities for plant health, growth and productivity, the molecular basis of these plant-microbe interactions is not well understood. Verrucomicrobia are cosmopolitans in the rhizosphere, nevertheless their adaptations and functions are enigmatic since the proportion of cultured members is low. Here we report four cultivated Verrucomicrobia isolated from rice, putatively representing four novel species, and a novel subdivision. The aerobic strains were isolated from roots or rhizomes of Oryza sativa and O. longistaminata. Two of them are the first cultivated endophytes of Verrucomicrobia, as validated by confocal laser scanning microscopy inside rice roots after re-infection under sterile conditions. This extended known verrucomicrobial niche spaces. Two strains were promoting root growth of rice. Discovery of root compartment-specific Verrucomicrobia permitted an across-phylum comparison of the genomic conformance to life in soil, rhizoplane or inside roots. Genome-wide protein domain comparison with niche-specific reference bacteria from distant phyla revealed signature protein domains which differentiated lifestyles in these microhabitats. Our study enabled us to shed light into the dark microbial matter of root Verrucomicrobia, to define genetic drivers for niche adaptation of bacteria to plant roots, and provides cultured strains for revealing causal relationships in plant-microbe interactions by reductionist approaches.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Bünger W,Jiang X,Müller J,Hurek T,Reinhold-Hurek Bdoi
10.1038/s41598-020-65277-6subject
Has Abstractpub_date
2020-05-26 00:00:00pages
8692issue
1issn
2045-2322pii
10.1038/s41598-020-65277-6journal_volume
10pub_type
杂志文章abstract：:This paper portrays the dynamics of pine wilt disease. The specific formula for reproduction number is accomplished. Global behavior is completely demonstrated on the basis of the basic reproduction number [Formula: see text]. The disease-free equilibrium is globally asymptotically stable for [Formula: see text] and i...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-60088-1
更新日期：2020-02-26 00:00:00
abstract：:Estimating the potential distribution of invasive species has been primarily achieved by employing species distribution models (SDM). Recently introduced joint species distribution models (JSDM) that include species interactions are expected to improve model output. Here we compare the predictive ability of SDM and JS...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-019-52256-9
更新日期：2019-11-01 00:00:00
abstract：:Specific HPV genotypes have been recognized as risk factors inducing head and neck cancers (HNC). The aim of this study was to validate a real-time PCR assay to detect accurately High Risk HPV DNA in Formalin Fixed Paraffin Embedded (FFPE) and oral cytobrush samples and compare the results with conventional PCR. Repea...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-018-29790-z
更新日期：2018-07-27 00:00:00
abstract：:Climate change is expected to have profound, partly unforeseeable effects on the composition of functional traits of complex ecosystems, such as coral reefs, and some ecosystem properties are at risk of disappearing. This study applies a novel spatially explicit, individual-based model to explore three critical life h...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-019-38962-4
更新日期：2019-03-06 00:00:00
abstract：:Novel activated boron nitride (BN) as an effective adsorbent for pollutants in water and air has been reported in the present work. The activated BN was synthesized by a simple structure-directed method that enabled us to control the surface area, pore volume, crystal defects and surface groups. The obtained BN exhibi...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep03208
更新日期：2013-11-13 00:00:00
abstract：:Transient hepatic steatosis upon liver resection supposes functional relationships between lipid metabolism and liver regeneration. Repin1 has been suggested as candidate gene for obesity and dyslipidemia by regulating key genes of lipid metabolism and lipid storage. Herein, we characterized the regenerative potential...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-018-35325-3
更新日期：2018-11-15 00:00:00
abstract：:The benefits that physical exercise confers on cardiovascular health are well known, whereas the notion that physical exercise can also improve cognitive performance has only recently begun to be explored and has thus far yielded only controversial results. In the present study, we used a sample of young male subjects...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep25440
更新日期：2016-05-05 00:00:00
abstract：:By growing monolayer FeSe on SrTiO3(001) surface, researchers obtain the highest superconducting transition-temperature for iron-based superconductor. Here, we study the antiferromagnetic (AFM) checkerboard monolayer FeSe adsorbed on SrTiO3(001) surface. We show that the system has a considerable charge transfer from ...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep02213
更新日期：2013-01-01 00:00:00
abstract：:In this paper, for the first time, the switchable two-color quantum dot laser has been realized considering solution process technology, which has both simultaneous and lonely lasing capability exploiting selective energy contacts. Furthermore, both channels can be modulated independently, which is a significant featu...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-60859-w
更新日期：2020-03-24 00:00:00
abstract：:Huntington's disease (HD) is a monogenetic neurodegenerative disorder that is caused by the expansion of a polyglutamine region within the huntingtin (HTT) protein, but there is still an incomplete understanding of the molecular mechanisms that drive pathology. Expression of the mutant form of HTT is a key aspect of d...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-78790-5
更新日期：2020-12-17 00:00:00
abstract：:Radix Astragali is commonly used in traditional Chinese medicine, and its quality is closely related to ecological factors, such as climate and soil, in the production area. To provide high-quality Radix Astragali to Chinese and foreign markets, we used maximum entropy model and statistical analysis method, combined w...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-69391-3
更新日期：2020-07-27 00:00:00
abstract：:Hypoxia-related gene (HRG) expression is associated with survival outcomes of colorectal cancer (CRC). Our aim was developing a nomogram predicting CRC overall survival (OS) with HRGs and clinicopathological factors. The Cancer Genome Atlas (TCGA) database was used as discovery cohort and two Gene Expression Omnibus d...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-018-38116-y
更新日期：2019-02-12 00:00:00
abstract：:We introduce "sense, track and separate" approach for the removal of Hg(2+) ion from aqueous media using highly ordered and magnetic mesoporous ferrosilicate nanocages functionalised with rhodamine fluorophore derivative. These functionalised materials offer both fluorescent and magnetic properties in a single system ...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep21820
更新日期：2016-02-25 00:00:00
abstract：:Although the use of metabarcoding to identify taxa in DNA mixtures is widely approved, its reliability in quantifying taxon abundance is still the subject of debate. In this study we investigated the relationships between the amount of pollen grains in mock solutions and the abundance of high-throughput sequence reads...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-61198-6
更新日期：2020-03-06 00:00:00
abstract：:Geographical variation of diabetic emergencies attended by prehospital emergency medical services (EMS) and the relationship between area-level social and demographic factors and risk of a diabetic emergency were examined. All cases of hypoglycaemia and hyperglycaemia attended by Ambulance Victoria between 1/01/2009 a...
journal_title：Scientific reports
pub_type： 临床试验,杂志文章,多中心研究
doi：10.1038/s41598-018-23457-5
更新日期：2018-03-23 00:00:00
abstract：:We demonstrated modulation of charge carrier densities in all-solution-processed organic field-effect transistors (OFETs) by modifying the injection properties with self-assembled monolayers (SAMs). The all-solution-processed OFETs based on an n-type polymer with inkjet-printed Ag electrodes were fabricated as a test ...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep46365
更新日期：2017-04-12 00:00:00
abstract：:The effect of the surface area of palm kernel shell activated carbon (PKSAC) on the properties of n-octadecane-encapsulated shape stabilized phase change material (SSPCM) for thermal energy storage (TES) application were studied. Various surface areas of the PKSAC were prepared using different amounts of H3PO4 treatme...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-72019-1
更新日期：2020-09-14 00:00:00
abstract：:Patients with type 1 diabetes have lower bone mineral density and higher risk of fractures. The role of osteoblasts in diabetes-related osteoporosis is well acknowledged whereas the role of osteoclasts (OCLs) is still unclear. We hypothesize that OCLs participate in pathological bone remodeling. We conducted studies i...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep30639
更新日期：2016-07-29 00:00:00
abstract：:Detection of copy number variations (CNVs) is a first-tier clinical diagnostic test for children with neurodevelopmental disorders (NDD), which reveals the genetic cause of the disorder in more than 20%. These are mostly known microdeletion/microduplication syndromes, but variants of unknown clinical significance (VOU...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-018-27824-0
更新日期：2018-06-21 00:00:00
abstract：:The family Brassicaceae includes plants that are non-host for arbuscular mycorrhizal fungi (AMF) such as the model plant Arabidopsis thaliana (arabidopsis) and the economically important crop plant Brassica napus (rapeseed). It is well known that Trichoderma species have the ability to colonize the rhizosphere of Bras...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-019-48269-z
更新日期：2019-08-12 00:00:00
abstract：:Prolonged intake of excessive amounts of ethanol is known to have adverse effects on the central nervous system (CNS). Here we investigated the effects of acute and chronic ethanol exposure and withdrawal from chronic ethanol exposure on glymphatic function, which is a brain-wide metabolite clearance system connected ...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-018-20424-y
更新日期：2018-02-02 00:00:00
abstract：:The amygdala plays a critical role in emotion. Its functional coupling with the hippocampus and ventromedial prefrontal cortex extending to a portion of the anterior cingulate cortex (ACC) is implicated in anxiogenesis and hypothalamic-pituitary-adrenal (HPA) system regulation. However, it remains unclear how amygdala...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-017-08918-7
更新日期：2017-08-16 00:00:00
abstract：:Respiratory syncytial virus (RSV) is a significant cause of lower respiratory tract infection in infants and elderly. To understand the evolution of neutralizing epitopes on the RSV glycoprotein (G) and fusion (F) proteins, we conducted a multi-year surveillance program (OUTSMART-RSV) in the US. Analysis of 1,146 RSV ...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-019-40387-y
更新日期：2019-03-07 00:00:00
abstract：:Calcium ion is an intracellular messenger that plays a central role in signal transduction pathways. Calcineurin B-like proteins (CBLs) and CBL-interacting protein kinases (CIPKs) signal network have shown different functions in the Ca(2+) signaling process. In this work, we identified the entire soybean (Glycine max)...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep28225
更新日期：2016-06-17 00:00:00
abstract：:An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...
journal_title：Scientific reports
pub_type： 已发布勘误
doi：10.1038/s41598-020-62904-0
更新日期：2020-04-10 00:00:00
abstract：:Neurovascular unit (NVU) is a basic unit in the brain, including neurons, glial cells, blood vessels and extracellular matrix. This concept implies the importance of a three-dimensional (3D) culture model including these cell types for investigating brain functions. However, little is known about the construction of a...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-017-17411-0
更新日期：2017-12-11 00:00:00
abstract：:Rather than the conventional concept of viewing conductive carbon black (CB) to be chemically inert in microbial electrochemical cells (MECs), here we confirmed the redox activity of CB for its feasibility as an electron sink in the microbial battery (MB). Acting as the cathode of a MB, the solid-state CB electrode sh...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-017-07174-z
更新日期：2017-08-01 00:00:00
abstract：:Surface-mount techniques primarily depend on soldering. However, soldering techniques have encountered some challenges in recent years. These challenges include rare metal recycling, thermal problems, and Pb toxicity. We recently developed a metallic nanowire surface fastener (NSF) to resolve the abovementioned proble...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-018-37693-2
更新日期：2019-01-31 00:00:00
abstract：:Recent studies have shown that cellular metabolism plays an important role in regulating immune cell functions. In immune cell differentiation, both interleukin-17-producing T (Th17) cells and dendritic cells (DCs) exhibit increased glycolysis through the upregulation of glycolytic enzymes, such as hexokinase-2 (HK2)....
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/srep42412
更新日期：2017-02-10 00:00:00
abstract：:Successful recruitment of new individuals is essential for recovery of degraded coral reefs. Enhancing supply of coral larvae increases initial settlement, however post-settlement survival can be influenced by density-dependent processes. We investigated the influence of larval density on settlement, colony abundance ...
journal_title：Scientific reports
pub_type： 杂志文章
doi：10.1038/s41598-020-62366-4
更新日期：2020-03-26 00:00:00
