Biological and statistical interpretation of size-at-age, mixed-effects models of growth.

Abstract:

:The differences in life-history traits and processes between organisms living in the same or different populations contribute to their ecological and evolutionary dynamics. We developed mixed-effect model formulations of the popular size-at-age von Bertalanffy and Gompertz growth functions to estimate individual and group variation in body growth, using as a model system four freshwater fish populations, where tagged individuals were sampled for more than 10 years. We used the software Template Model Builder to estimate the parameters of the mixed-effect growth models. Tests on data that were not used to estimate model parameters showed good predictions of individual growth trajectories using the mixed-effects models and starting from one single observation of body size early in life; the best models had R2 > 0.80 over more than 500 predictions. Estimates of asymptotic size from the Gompertz and von Bertalanffy models were not significantly correlated, but their predictions of size-at-age of individuals were strongly correlated (r > 0.99), which suggests that choosing between the best models of the two growth functions would have negligible effects on the predictions of size-at-age of individuals. Model results pointed to size ranks that are largely maintained throughout the lifetime of individuals in all populations.

journal_name

R Soc Open Sci

authors

Vincenzi S,Jesensek D,Crivelli AJ

doi

10.1098/rsos.192146

subject

Has Abstract

pub_date

2020-04-08 00:00:00

pages

192146

issue

4

issn

2054-5703

pii

rsos192146

journal_volume

7

pub_type

杂志文章
  • Investigation of growth kinetics and partial denitrification performance in strain Acinetobacter johnsonii under different environmental conditions.

    abstract::A denitrifying strain ZY04 with a high nitrite-accumulating rate was isolated and purified from activated sludge in a laboratory-scale A2/O reactor. The strain was characterized and identified as Acinetobacter johnsonii by 16S rDNA phylogenetic analysis. The sequences of the key functional genes (napA, nirB, nirD) inv...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.191275

    authors: Zhang Y,Wang X,Wang W,Sun Z,Li J

    更新日期:2019-12-04 00:00:00

  • Studies on chain shuttling polymerization reaction of nonbridged half-titanocene and bis(phenoxy-imine) Zr binary catalyst system.

    abstract::In this contribution, olefin block copolymers were produced via chain shuttling polymerization (CSP), using a new combination of catalysts and a chain shuttling agent (CSA) diethylzinc (ZnEt2). The binary catalyst system included nonbridged half-titanocene catalyst, Cp*TiCl2(O-2,6-iPr2C6H3) (Cat A) and bis(phenoxy-imi...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.182007

    authors: Xu Q,Gao R,Liu D

    更新日期:2019-04-10 00:00:00

  • Synthesis and structure/properties characterizations of four polyurethane model hard segments.

    abstract::Four model polyurethane (PU) hard segments were synthesized by reaction of butanol with four typical diisocyanates. The four diisocyanates were aromatic 4,4'-diphenylmethane diisocyanate (4,4'-MDI) and MDI-50 (50% mixture of 2,4'-MDI and 4,4'-MDI), cycloaliphatic 4,4'-dicyclohexylmethane diisocyanate (HMDI) and linear...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.180536

    authors: Jiang L,Ren Z,Zhao W,Liu W,Liu H,Zhu C

    更新日期:2018-07-25 00:00:00

  • Pseudo-enantiomeric chiral components and formation of the helical micro- and nanostructures in charge-transfer complexes.

    abstract::Helical organic micro- and nanostructures are formed by a charge-transfer complex, cinchonidine-TCNQ. These unusual forms result from the chirality, the steric structure and specific interactions of cinchonidine molecules. These materials are semiconductors (10-4 S cm-1), with the typical absorption spectra in IR and ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.171499

    authors: Langer JJ,Hreczycho G

    更新日期:2018-03-14 00:00:00

  • Limiting stochastic processes of shift-periodic dynamical systems.

    abstract::A shift-periodic map is a one-dimensional map from the real line to itself which is periodic up to a linear translation and allowed to have singularities. It is shown that iterative sequences xn+1 = F(x n ) generated by such maps display rich dynamical behaviour. The intege...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.191423

    authors: Stadlmann J,Erban R

    更新日期:2019-11-27 00:00:00

  • Effect of the second-step voltages on the structural and corrosion properties of silicon-calcium-phosphate (Si-CaP) coatings on Mg-Zn-Ca alloy.

    abstract::The applications of magnesium (Mg) alloys as biodegradable orthopedic implants are mainly restricted due to their rapid degradation rate in the physiological environment. In this study, Si-CaP micro-arc oxidation (MAO) coatings were prepared on a Mg-Zn-Ca alloy by a second-step MAO process at different voltages in ord...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.172410

    authors: Dou J,Zhao Y,Lu L,Gu G,Yu H,Chen C

    更新日期:2018-10-10 00:00:00

  • Dust evolution, a global view: III. Core/mantle grains, organic nano-globules, comets and surface chemistry.

    abstract::Within the framework of The Heterogeneous dust Evolution Model for Interstellar Solids (THEMIS), this work explores the surface processes and chemistry relating to core/mantle interstellar and cometary grain structures and their influence on the nature of these fascinating particles. It appears that a realistic consid...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.160224

    authors: Jones AP

    更新日期:2016-12-14 00:00:00

  • Numerical techniques for design calculations of longitudinal bending in buried steel pipes subjected to lateral Earth movements.

    abstract::This paper presents simplified finite-element analysis procedures based on geometrical nonlinearity and ductile Mohr-Coulomb-Davis plasticity for analysis of bending behaviour of steel pipes subjected to lateral soil loading. A simple, and easy to implement, user-defined subroutine to represent soil stiffness using th...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.181550

    authors: Almahakeri M,Moore ID,Fam A

    更新日期:2019-07-10 00:00:00

  • Migratory passage structures at hydropower plants as potential physiological and behavioural selective agents.

    abstract::Anthropogenic activities affect fish populations worldwide. River dams have profound impacts on ecosystems by changing habitats and hindering migration. In an effort to counteract such effects, a range of mitigation measures have been installed at hydroelectric power plants. However, not all individuals in a populatio...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.190989

    authors: Haraldstad T,Haugen TO,Kroglund F,Olsen EM,Höglund E

    更新日期:2019-11-13 00:00:00

  • Detection and perception of generic host volatiles by mosquitoes modulate host preference: context dependence of (R)-1-octen-3-ol.

    abstract::Natural selection favours a restricted host breadth in disease vector mosquitoes, indicating that there is an adaptive value associated with maintaining plasticity in host preference. One mechanism to maintain such plasticity is via the detection of generic cues by conserved peripheral olfactory pathways, which when p...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.160467

    authors: Majeed S,Hill SR,Birgersson G,Ignell R

    更新日期:2016-11-09 00:00:00

  • Enhanced visible-light photocatalytic activity of anatase-rutile mixed-phase nano-size powder given by high-temperature heat treatment.

    abstract::Nano-size EVONIK AEROXIDE® P25 titanium dioxide, TiO2, powder was heat-treated at temperatures, 700-900°C, in air. An X-ray diffraction study showed that the P25 powder is composed of approximately 20 and approximately 80 mass% of rutile and anatase phases, respectively. It was also shown that the transformation from ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.191539

    authors: Ishigaki T,Nakada Y,Tarutani N,Uchikoshi T,Tsujimoto Y,Isobe M,Ogata H,Zhang C,Hao D

    更新日期:2020-01-15 00:00:00

  • How water availability influences morphological and biomechanical properties in the one-leaf plant Monophyllaea horsfieldii.

    abstract::In its natural habitat, the one-leaf plant Monophyllaea horsfieldii (Gesneriaceae) shows striking postural changes and dramatic loss of stability in response to intermittently occurring droughts. As the morphological, anatomical and biomechanical bases of these alterations are as yet unclear, we examined the influence...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.171076

    authors: Kampowski T,Mylo MD,Poppinga S,Speck T

    更新日期:2018-01-03 00:00:00

  • Parallel diversifications of Cremastosperma and Mosannona (Annonaceae), tropical rainforest trees tracking Neogene upheaval of South America.

    abstract::Much of the immense present day biological diversity of Neotropical rainforests originated from the Miocene onwards, a period of geological and ecological upheaval in South America. We assess the impact of the Andean orogeny, drainage of Lake Pebas and closure of the Panama isthmus on two clades of tropical trees (Cre...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.171561

    authors: Pirie MD,Maas PJM,Wilschut RA,Melchers-Sharrott H,Chatrou LW

    更新日期:2018-01-31 00:00:00

  • Novel elucidation and treatment of pancreatic chronic graft-versus-host disease in mice.

    abstract::Chronic graft-versus-host disease (cGVHD) is a severe complication of allogeneic haematopoietic stem cell transplantation. There is a growing understanding of cGVHD, and several effective therapies for cGVHD have been reported. However, pancreatic cGVHD is a potentially untapped study field. Our thought-provoking stud...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.181067

    authors: Mukai S,Ogawa Y,Urano F,Kawakami Y,Tsubota K

    更新日期:2018-10-17 00:00:00

  • Calculating mutual information for spike trains and other data with distances but no coordinates.

    abstract::Many important data types, such as the spike trains recorded from neurons in typical electrophysiological experiments, have a natural notion of distance or similarity between data points, even though there is no obvious coordinate system. Here, a simple Kozachenko-Leonenko estimator is derived for calculating the mutu...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.140391

    authors: Houghton C

    更新日期:2015-05-13 00:00:00

  • Family ties: the multilevel effects of households and kinship on the networks of individuals.

    abstract::Among social mammals, humans uniquely organize themselves into communities of households that are centred around enduring, predominantly monogamous unions of men and women. As a consequence of this social organization, individuals maintain social relationships both within and across households, and potentially there i...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.172159

    authors: Koster J

    更新日期:2018-04-18 00:00:00

  • Contradicting habitat type-extinction risk relationships between living and fossil amphibians.

    abstract::Trait analysis has become a crucial tool for assessing the extinction risk of species. While some extinction risk-trait relationships have been often identical between different living taxa, a temporal comparison of fossil taxa with related current taxa was rarely considered. However, we argue that it is important to ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.170051

    authors: Tietje M,Rödel MO

    更新日期:2017-05-10 00:00:00

  • On complex systems of adaptive frugal products.

    abstract::Frugal products possess a proper mix of features including minimal consumption of resources, good functionality under nominal conditions and low cost. Therefore, increasing use of frugal products, that are designed and also fabricated systematically, is crucial to all-round sustainable development. However, their low ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.192057

    authors: Rao BC

    更新日期:2020-07-08 00:00:00

  • Simultaneous estimation of seasonal population density, habitat preference and catchability of wild boars based on camera data and harvest records.

    abstract::Analyses of life history and population dynamics are essential for effective population control of wild mammals. We developed a model for the simultaneous estimation of seasonal changes in three parameters-population density, habitat preference and trap catchability of target animals-based on camera-trapping data and ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.200579

    authors: Yokoyama Y,Nakashima Y,Yajima G,Miyashita T

    更新日期:2020-08-19 00:00:00

  • Dichlorobenzene: an effective solvent for epoxy/graphene nanocomposites preparation.

    abstract::It is generally recognized that dimethylformamide (DMF) and ethanol are good media to uniformly disperse graphene, and therefore have been used widely in the preparation of epoxy/graphene nanocomposites. However, as a solvent to disperse graphene, dichlorobenzene (DCB) has not been fully realized by the polymer commun...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.170778

    authors: Wei J,Saharudin MS,Vo T,Inam F

    更新日期:2017-10-11 00:00:00

  • Graphic kinematics, visual virtual work and elastographics.

    abstract::In this paper, recent progress in graphic statics is combined with Williot displacement diagrams to create a graphical description of both statics and kinematics for two- and three-dimensional pin-jointed trusses. We begin with reciprocal form and force diagrams. The force diagram is dissected into its component cells...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.170202

    authors: McRobie A,Konstantatou M,Athanasopoulos G,Hannigan L

    更新日期:2017-05-24 00:00:00

  • Climbing adaptations, locomotory disparity and ecological convergence in ancient stem 'kangaroos'.

    abstract::Living kangaroos, wallabies and rat-kangaroos (Macropodoidea) constitute the most ecologically diverse radiation of Australasian marsupials. Indeed, even their hallmark bipedal hopping gait has been variously modified for bounding, walking and climbing. However, the origins of this locomotory adaptability are uncertai...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.181617

    authors: Den Boer W,Campione NE,Kear BP

    更新日期:2019-02-06 00:00:00

  • Comprehensive diagnosis of PCDD/F emission from three hazardous waste incinerators.

    abstract::Comprehensive diagnosis of polychlorinated dibenzo-p-dioxin and dibenzofuran (PCDD/F) emissions was systematically conducted on three hazardous waste incinerators (HWIs). Results indicated that PCDD/F mainly existed in the solid phase before the bag filter. This was especially true for higher chlorinated dioxin and fu...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.172056

    authors: Cao X,Ji L,Lin X,Stevens WR,Tang M,Shang F,Tang S,Lu S

    更新日期:2018-07-11 00:00:00

  • Frozen verses: Antarctic minke whales (Balaenoptera bonaerensis) call predominantly during austral winter.

    abstract::The recent identification of the bio-duck call as Antarctic minke whale (AMW) vocalization allows the use of passive acoustic monitoring to retrospectively investigate year-round spatial-temporal patterns in minke whale occurrence in ice-covered areas. Here, we present an analysis of AMW occurrence patterns based on a...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.192112

    authors: Filun D,Thomisch K,Boebel O,Brey T,Širović A,Spiesecke S,Van Opzeeland I

    更新日期:2020-10-07 00:00:00

  • Erratum: Atomic scale modelling of hexagonal structured metallic fission product alloys.

    abstract::[This corrects the article DOI: 10.1098/rsos.140292.]. ...

    journal_title:Royal Society open science

    pub_type: 已发布勘误

    doi:10.1098/rsos.150193

    authors: Middleburgh SC,King DM,Lumpkin GR

    更新日期:2015-06-03 00:00:00

  • Nest defence behavioural reaction norms: testing life-history and parental investment theory predictions.

    abstract::Predation is the primary source of reproductive failure in many avian taxa and nest defence behaviour against predators is hence an important aspect of parental investment. Nest defence is a complex trait that might consistently differ among individuals (personality), while simultaneously vary within individuals (plas...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.182180

    authors: Thys B,Lambreghts Y,Pinxten R,Eens M

    更新日期:2019-04-10 00:00:00

  • A new insight into the evolution and functional divergence of FRK genes in Pyrus bretschneideri.

    abstract::In plants, plant fructokinases (FRKs) are considered to be the main gateway of fructose metabolism as they can phosphorylate fructose to fructose-6-phosphate. Chinese white pears (Pyrus bretschneideri) are one of the popular fruits in the world market; sugar content is an important factor affecting the quality of the ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.171463

    authors: Cao Y,Li S,Han Y,Meng D,Jiao C,Abdullah M,Li D,Jin Q,Lin Y,Cai Y

    更新日期:2018-07-18 00:00:00

  • Functions of innate and acquired immune system are reduced in domestic pigeons (Columba livia domestica) given a low protein diet.

    abstract::Racing pigeons are exposed to and act as carriers of diseases. Dietary protein requirement for their maintenance has not been determined experimentally despite their being domesticated for over 7000 years. A maintenance nitrogen (protein) requirement (MNR) for pigeons was determined in a balance study using diets cont...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.150408

    authors: Mabuchi Y,Frankel TL

    更新日期:2016-03-23 00:00:00

  • Multi-robot replication of ant collective towing behaviours.

    abstract::In this work, teams of small mobile robots are used to test hypotheses about cooperative transport by ants. This study attempts to explain a decrease in steady-state transport speed with increasing team size that was previously observed in the ant Novomessor cockerelli. Two models of one-dimensional collective towing ...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.180409

    authors: Wilson S,Buffin A,Pratt SC,Berman S

    更新日期:2018-10-17 00:00:00

  • A dwarf walrus from the Miocene of Baja California Sur, Mexico.

    abstract::Here, we describe the odobenid Nanodobenus arandai gen. et sp. nov., based on a nearly complete left mandible from the mid to late Miocene Tortugas Formation in Baja California Sur. Nanodobenus is distinguished among odobenids by displaying a unique combination of plesiomorphic and derived characters, such as narrow m...

    journal_title:Royal Society open science

    pub_type: 杂志文章

    doi:10.1098/rsos.180423

    authors: Velez-Juarbe J,Salinas-Márquez FM

    更新日期:2018-08-08 00:00:00