Hybridizing salamanders experience accelerated diversification.

Abstract:

:Whether hybridization generates or erodes species diversity has long been debated, but to date most studies have been conducted at small taxonomic scales. Salamanders (order Caudata) represent a taxonomic order in which hybridization plays a prevalent ecological and evolutionary role. We employed a recently developed model of trait-dependent diversification to test the hypothesis that hybridization impacts the diversification dynamics of species that are currently hybridizing. We find strong evidence supporting this hypothesis, showing that hybridizing salamander lineages have significantly greater net-diversification rates than non-hybridizing lineages. This pattern is driven by concurrently increased speciation rates and decreased extinction rates in hybridizing lineages. Our results support the hypothesis that hybridization can act as a generative force in macroevolutionary diversification.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Patton AH,Margres MJ,Epstein B,Eastman J,Harmon LJ,Storfer A

doi

10.1038/s41598-020-63378-w

subject

Has Abstract

pub_date

2020-04-16 00:00:00

pages

6566

issue

1

issn

2045-2322

pii

10.1038/s41598-020-63378-w

journal_volume

10

pub_type

杂志文章
  • Automatic choroidal segmentation in OCT images using supervised deep learning methods.

    abstract::The analysis of the choroid in the eye is crucial for our understanding of a range of ocular diseases and physiological processes. Optical coherence tomography (OCT) imaging provides the ability to capture highly detailed cross-sectional images of the choroid yet only a very limited number of commercial OCT instrument...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49816-4

    authors: Kugelman J,Alonso-Caneiro D,Read SA,Hamwood J,Vincent SJ,Chen FK,Collins MJ

    更新日期:2019-09-16 00:00:00

  • Nitrous Oxide Production in a Granule-based Partial Nitritation Reactor: A Model-based Evaluation.

    abstract::Sustainable wastewater treatment has been attracting increasing attentions over the past decades. However, the production of nitrous oxide (N2O), a potent GHG, from the energy-efficient granule-based autotrophic nitrogen removal is largely unknown. This study applied a previously established N2O model, which incorpora...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45609

    authors: Peng L,Sun J,Liu Y,Dai X,Ni BJ

    更新日期:2017-04-03 00:00:00

  • Laterals take it better - Emerging and young lateral roots survive lethal salinity longer than the primary root in Arabidopsis.

    abstract::Plant responses to salinity have been extensively studied over the last decades. Despite the vast accumulated knowledge, the ways Arabidopsis lateral roots (LR) cope with lethal salinity has not been fully resolved. Here we compared the primary root (PR) and the LR responses during events leading to lethal salinity (N...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60163-7

    authors: Ambastha V,Friedmann Y,Leshem Y

    更新日期:2020-02-24 00:00:00

  • Going Beyond Rate Changes as the Sole Indicator for Dynamic Triggering of Earthquakes.

    abstract::Remote earthquake triggering is a well-established phenomenon. Triggering is commonly identified from statistically significant increases in earthquake rate coincident with the passage of seismic energy. In establishing rate changes, short duration earthquake catalogs are commonly used, and triggered sequences are not...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60988-2

    authors: Pankow KL,Kilb D

    更新日期:2020-03-05 00:00:00

  • Distribution of Bathyarchaeota Communities Across Different Terrestrial Settings and Their Potential Ecological Functions.

    abstract::High abundance and widespread distribution of the archaeal phylum Bathyarchaeota in marine environment have been recognized recently, but knowledge about Bathyarchaeota in terrestrial settings and their correlation with environmental parameters is fairly limited. Here we reported the abundance of Bathyarchaeota member...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45028

    authors: Xiang X,Wang R,Wang H,Gong L,Man B,Xu Y

    更新日期:2017-03-21 00:00:00

  • Low-dimensional behavior of Kuramoto model with inertia in complex networks.

    abstract::Low-dimensional behavior of large systems of globally coupled oscillators has been intensively investigated since the introduction of the Ott-Antonsen ansatz. In this report, we generalize the Ott-Antonsen ansatz to second-order Kuramoto models in complex networks. With an additional inertia term, we find a low-dimens...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04783

    authors: Ji P,Peron TK,Rodrigues FA,Kurths J

    更新日期:2014-05-02 00:00:00

  • Moonlighting transcriptional activation function of a fungal sulfur metabolism enzyme.

    abstract::Moonlighting proteins, including metabolic enzymes acting as transcription factors (TF), are present in a variety of organisms but have not been described in higher fungi so far. In a previous genome-wide analysis of the TF repertoire of the plant-symbiotic fungus Tuber melanosporum, we identified various enzymes, inc...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25165

    authors: Levati E,Sartini S,Bolchi A,Ottonello S,Montanini B

    更新日期:2016-04-28 00:00:00

  • Comparing Sanger sequencing and high-throughput metabarcoding for inferring photobiont diversity in lichens.

    abstract::The implementation of HTS (high-throughput sequencing) approaches is rapidly changing our understanding of the lichen symbiosis, by uncovering high bacterial and fungal diversity, which is often host-specific. Recently, HTS methods revealed the presence of multiple photobionts inside a single thallus in several lichen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-26947-8

    authors: Paul F,Otte J,Schmitt I,Dal Grande F

    更新日期:2018-06-05 00:00:00

  • New limits of secondary β-relaxation.

    abstract::Glass is an ultraviscous liquid that ceases to flow on a laboratory timescale but continues to relax on a geological timescale. Quintessentially, it has become hopeless for humans to explore the equilibrium behavior of glass, although the technology of glass making witness a remarkable advance. In this work, we propos...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep43091

    authors: Tripathy SN,Rams-Baron M,Wojnarowska Z,Knapik-Kowalczuk J,Paluch M

    更新日期:2017-02-22 00:00:00

  • Corrigendum: The NAC-type transcription factor OsNAC2 regulates ABA-dependent genes and abiotic stress tolerance in rice.

    abstract::This corrects the article DOI: 10.1038/srep40641. ...

    journal_title:Scientific reports

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/srep46890

    authors: Shen J,Lv B,Luo L,He J,Mao C,Xi D,Ming F

    更新日期:2017-08-29 00:00:00

  • QTL mapping of cucumber fruit flesh thickness by SLAF-seq.

    abstract::Cucumber is an agriculturally and economically important vegetable crop worldwide. Fruit flesh thickness is an important trait for cucumber and also a central determinant of yield, yet little is known about the underlying mechanism of this trait. In this study, bulked segregant analysis (BSA) combined with specific le...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15829

    authors: Xu X,Lu L,Zhu B,Xu Q,Qi X,Chen X

    更新日期:2015-10-28 00:00:00

  • Elastin is Localised to the Interfascicular Matrix of Energy Storing Tendons and Becomes Increasingly Disorganised With Ageing.

    abstract::Tendon is composed of fascicles bound together by the interfascicular matrix (IFM). Energy storing tendons are more elastic and extensible than positional tendons; behaviour provided by specialisation of the IFM to enable repeated interfascicular sliding and recoil. With ageing, the IFM becomes stiffer and less fatigu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-09995-4

    authors: Godinho MSC,Thorpe CT,Greenwald SE,Screen HRC

    更新日期:2017-08-30 00:00:00

  • Identification of lncRNA functions in lung cancer based on associated protein-protein interaction modules.

    abstract::Long non-coding RNAs (lncRNAs) have been found to play important roles in various biological processes; however, many of their functions remain unclear. In this study, we present a novel approach to identify the lncRNA-associated protein-protein interaction (PPI) modules and ascertain their functions in human lung squ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35939

    authors: Wu CH,Hsu CL,Lu PC,Lin WC,Juan HF,Huang HC

    更新日期:2016-10-27 00:00:00

  • Early Postnatal Cardiomyocyte Proliferation Requires High Oxidative Energy Metabolism.

    abstract::Cardiac energy metabolism must cope with early postnatal changes in tissue oxygen tensions, hemodynamics, and cell proliferation to sustain development. Here, we tested the hypothesis that proliferating neonatal cardiomyocytes are dependent on high oxidative energy metabolism. We show that energy-related gene expressi...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15656-3

    authors: de Carvalho AETS,Bassaneze V,Forni MF,Keusseyan AA,Kowaltowski AJ,Krieger JE

    更新日期:2017-11-13 00:00:00

  • Importance of Zinc Transporter 8 Autoantibody in the Diagnosis of Type 1 Diabetes in Latin Americans.

    abstract::There is a scarcity of data of zinc transporter-8 autoantibody (ZnT8A) on mixed populations such as Brazilian. Therefore, we evaluated the relevance of ZnT8A for type 1 diabetes (T1D) diagnosis and the role of ZnT8 coding gene (SLC30A8) in T1D predisposition. Patients with T1D (n = 629; diabetes duration = 11 (6-16) y...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00307-4

    authors: Gomes KF,Semzezem C,Batista R,Fukui RT,Santos AS,Correia MR,Passos-Bueno MR,Silva ME

    更新日期:2017-03-16 00:00:00

  • Association between dental caries and adverse pregnancy outcomes.

    abstract::Poor oral health is not only associated with diabetes and cardiovascular disease but adverse pregnancy outcomes. However the influence of dental caries on pregnancy is unknown. The aim of this study was to evaluate the association between dental caries and adverse pregnancy outcomes and the effect of treatment for den...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62306-2

    authors: Cho GJ,Kim SY,Lee HC,Kim HY,Lee KM,Han SW,Oh MJ

    更新日期:2020-03-24 00:00:00

  • Association between Int7G24A rs334354 polymorphism and cancer risk: a meta-analysis of case-control studies.

    abstract::Accumulating evidences have suggested the potential association between Int7G24A (rs334354) polymorphism and cancer risk. However, results from epidemiological studies are controversial. We thus conducted this meta-analysis to clarify the association. Relevant studies were identified on electronic databases according ...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/srep11350

    authors: Wu W,Tong Y,Wei X,Zhao Q,Pan X,Yu G,Lu Q

    更新日期:2015-06-15 00:00:00

  • Rapid Regeneration and Reuse of Silica Columns from PCR Purification and Gel Extraction Kits.

    abstract::Silica columns from PCR purification and gel extraction kits are widely used in laboratories worldwide to assist in gene cloning. However, the use of these columns can generate plastic waste that has an environmental impact due to their one-off design and massive consumption. Thus, it is important to develop a novel m...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30316-w

    authors: Zhou Y,Zhang Y,He W,Wang J,Peng F,Huang L,Zhao S,Deng W

    更新日期:2018-08-27 00:00:00

  • Tick receptor for outer surface protein A from Ixodes ricinus - the first intrinsically disordered protein involved in vector-microbe recognition.

    abstract::The tick receptor for outer surface protein A (TROSPA) is the only identified factor involved in tick gut colonization by various Borrelia species. TROSPA is localized in the gut epithelium and can recognize and bind the outer surface bacterial protein OspA via an unknown mechanism. Based on earlier reports and our la...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25205

    authors: Urbanowicz A,Lewandowski D,Szpotkowski K,Figlerowicz M

    更新日期:2016-04-26 00:00:00

  • Novel phages of healthy skin metaviromes from South Africa.

    abstract::Recent skin metagenomic studies have investigated the harbored viral diversity and its possible influence on healthy skin microbial populations, and tried to establish global patterns of skin-phage evolution. However, the detail associated with the phages that potentially play a role in skin health has not been invest...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30705-1

    authors: van Zyl LJ,Abrahams Y,Stander EA,Kirby-McCollough B,Jourdain R,Clavaud C,Breton L,Trindade M

    更新日期:2018-08-16 00:00:00

  • An unexpected genetic diversity pattern and a complex demographic history of a rare medicinal herb, Chinese asparagus (Asparagus cochinchinensis) in Korea.

    abstract::Range-wide population studies of wide spread species are often associated with complex diversity patterns resulting from genetically divergent evolutionary significant units (ESUs). The compound evolutionary history creating such a pattern of diversity can be inferred through molecular analyses. Asparagus cochinchinen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46275-9

    authors: Lee SR,Park HS,Kim BY,Lee JH,Fan Q,Gaskin JF,Kim YD

    更新日期:2019-07-05 00:00:00

  • A marine inducible prophage vB_CibM-P1 isolated from the aerobic anoxygenic phototrophic bacterium Citromicrobium bathyomarinum JL354.

    abstract::A prophage vB_CibM-P1 was induced by mitomycin C from the epipelagic strain Citromicrobium bathyomarinum JL354, a member of the alpha-IV subcluster of marine aerobic anoxygenic phototrophic bacteria (AAPB). The induced bacteriophage vB_CibM-P1 had Myoviridae-like morphology and polyhedral heads (approximately capsid 6...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07118

    authors: Zheng Q,Zhang R,Xu Y,White RA 3rd,Wang Y,Luo T,Jiao N

    更新日期:2014-11-19 00:00:00

  • Direct Observation of Defect Range and Evolution in Ion-Irradiated Single Crystalline Ni and Ni Binary Alloys.

    abstract::Energetic ions have been widely used to evaluate the irradiation tolerance of structural materials for nuclear power applications and to modify material properties. It is important to understand the defect production, annihilation and migration mechanisms during and after collision cascades. In this study, single crys...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19994

    authors: Lu C,Jin K,Béland LK,Zhang F,Yang T,Qiao L,Zhang Y,Bei H,Christen HM,Stoller RE,Wang L

    更新日期:2016-02-01 00:00:00

  • Integrated Proteomic and Metabolomic prediction of Term Preeclampsia.

    abstract::Term preeclampsia (tPE), ≥37 weeks, is the most common form of PE and the most difficult to predict. Little is known about its pathogenesis. This study aims to elucidate the pathogenesis and assess early prediction of tPE using serial integrated metabolomic and proteomic systems biology approaches. Serial first- (11-1...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15882-9

    authors: Bahado-Singh R,Poon LC,Yilmaz A,Syngelaki A,Turkoglu O,Kumar P,Kirma J,Allos M,Accurti V,Li J,Zhao P,Graham SF,Cool DR,Nicolaides K

    更新日期:2017-11-23 00:00:00

  • Enabling Controlling Complex Networks with Local Topological Information.

    abstract::Complex networks characterize the nature of internal/external interactions in real-world systems including social, economic, biological, ecological, and technological networks. Two issues keep as obstacles to fulfilling control of large-scale networks: structural controllability which describes the ability to guide a ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-22655-5

    authors: Li G,Deng L,Xiao G,Tang P,Wen C,Hu W,Pei J,Shi L,Stanley HE

    更新日期:2018-03-15 00:00:00

  • Amygdala-centred functional connectivity affects daily cortisol concentrations: a putative link with anxiety.

    abstract::The amygdala plays a critical role in emotion. Its functional coupling with the hippocampus and ventromedial prefrontal cortex extending to a portion of the anterior cingulate cortex (ACC) is implicated in anxiogenesis and hypothalamic-pituitary-adrenal (HPA) system regulation. However, it remains unclear how amygdala...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08918-7

    authors: Hakamata Y,Komi S,Moriguchi Y,Izawa S,Motomura Y,Sato E,Mizukami S,Kim Y,Hanakawa T,Inoue Y,Tagaya H

    更新日期:2017-08-16 00:00:00

  • Plasma dipeptidyl-peptidase-4 activity is associated with left ventricular systolic function in patients with ST-segment elevation myocardial infarction.

    abstract::Plasma dipeptidyl-peptidase-4 activity (DPP4a) is inversely associated with left ventricular function in patients with heart failure (HF) or diabetes. However, the association between DPP4a and left ventricular function in ST-segment elevation myocardial infarction (STEMI) patients has not been reported. We studied th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06514-3

    authors: Li JW,Chen YD,Liu YQ,Wang JD,Chen WR,Zhang YQ,Ma Q

    更新日期:2017-07-21 00:00:00

  • Polarization tunable all-dielectric color filters based on cross-shaped Si nanoantennas.

    abstract::Polarization sensitive and insensitive color filters have important applications in the area of nano-spectroscopy and CCD imaging applications. Metallic nanostructures provide an efficient way to design and engineer ultrathin color filters. These nanostructures have capability to split the white light into fundamental...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07986-z

    authors: Vashistha V,Vaidya G,Gruszecki P,Serebryannikov AE,Krawczyk M

    更新日期:2017-08-14 00:00:00

  • Studies of the oligomerisation mechanism of a cystatin-based engineered protein scaffold.

    abstract::Engineered protein scaffolds are an alternative to monoclonal antibodies in research and drug design due to their small size, ease of production, versatility, and specificity for chosen targets. One key consideration when engineering such proteins is retaining the original scaffold structure and stability upon inserti...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45565-6

    authors: Zalar M,Indrakumar S,Levy CW,Tunnicliffe RB,Peters GHJ,Golovanov AP

    更新日期:2019-06-21 00:00:00

  • Probing tissue microstructure by diffusion skewness tensor imaging.

    abstract::Probing the cellular structure of in vivo biological tissue is a fundamental problem in biomedical imaging and medical science. This work introduces an approach for analyzing diffusion magnetic resonance imaging data acquired by the novel tensor-valued encoding technique for characterizing tissue microstructure. Our a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79748-3

    authors: Ning L,Szczepankiewicz F,Nilsson M,Rathi Y,Westin CF

    更新日期:2021-01-08 00:00:00