Very high sensitivity of African rice to artificial ultraviolet-B radiation caused by genotype and quantity of cyclobutane pyrimidine dimer photolyase.

Abstract:

:Ultraviolet-B (UVB) radiation damages plants and decreases their growth and productivity. We previously demonstrated that UVB sensitivity varies widely among Asian rice (Oryza sativa L.) cultivars and that the activity of cyclobutane pyrimidine dimer (CPD) photolyase, which repairs UVB-induced CPDs, determines UVB sensitivity. Unlike Asian rice, African rice (Oryza glaberrima Steud. and Oryza barthii A. Chev.) has mechanisms to adapt to African climates and to protect itself against biotic and abiotic stresses. However, information about the UVB sensitivity of African rice species is largely absent. We showed that most of the African rice cultivars examined in this study were UVB-hypersensitive or even UVB-super-hypersensitive in comparison with the UVB sensitivity of Asian O. sativa cultivars. The difference in UVB resistance correlated with the total CPD photolyase activity, which was determined by its activity and its cellular content. The UVB-super-hypersensitive cultivars had low enzyme activity caused by newly identified polymorphisms and low cellular CPD photolyase contents. The new polymorphisms were only found in cultivars from West Africa, particularly in those from countries believed to be centres of O. glaberrima domestication. This study provides new tools for improving both Asian and African rice productivity.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Mmbando GS,Teranishi M,Hidema J

doi

10.1038/s41598-020-59720-x

subject

Has Abstract

pub_date

2020-02-21 00:00:00

pages

3158

issue

1

issn

2045-2322

pii

10.1038/s41598-020-59720-x

journal_volume

10

pub_type

杂志文章
  • The use of the NEDD8 inhibitor MLN4924 (Pevonedistat) in a cyclotherapy approach to protect wild-type p53 cells from MLN4924 induced toxicity.

    abstract::Targetting the ubiquitin pathway is an attractive strategy for cancer therapy. The inhibitor of the ubiquitin-like molecule NEDD8 pathway, MLN4924 (Pevonedistat) is in Phase II clinical trials. Protection of healthy cells from the induced toxicity of the treatment while preserving anticancer efficacy is a highly antic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37775

    authors: Malhab LJ,Descamps S,Delaval B,Xirodimas DP

    更新日期:2016-11-30 00:00:00

  • Quantitative and Fast Sterility Assurance Testing of Surfaces by Enumeration of Germinable Endospores.

    abstract::A fast Endospore Germinability Assay (EGA) was validated with traditional plate counts to enumerate single endospore germination events for monitoring surface sterilization. The assay is based on a time-gated luminescence microscopy technique enabling visualization and enumeration of individual germinating endospores....

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57175-3

    authors: Yung PT,Lester E,Ponce A

    更新日期:2020-01-16 00:00:00

  • Capillary isoelectric focusing after sample enrichment with immunoaffinity chromatography in a single capillary.

    abstract::For accurate micro-scale quantification of a specific protein in biological fluids, immunoaffinity chromatography (IAC) and isoelectric focusing (IEF) were combined in a single fused-silica capillary. The inner wall of the capillary was coated with an anti-E-tag antibody at the inlet side to form an IAC column, and po...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39221

    authors: Shimura K,Nagai T

    更新日期:2016-12-15 00:00:00

  • New Bicyclic Cembranoids from the South China Sea Soft Coral Sarcophyton trocheliophorum.

    abstract::Nine new bicyclic cembranoids, sarcophytrols M-U(1-9), were isolated from the South China Sea soft coral Sarcophyton trocheliophorum as minor components, along with one known related cembranoid 10. Their structures were elucidated by detailed spectroscopic analysis and chemical conversion. The chemical structures of t...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep46584

    authors: Liang LF,Chen WT,Li XW,Wang HY,Guo YW

    更新日期:2017-04-21 00:00:00

  • Expression profiles of cholesterol metabolism-related genes are altered during development of experimental autoimmune encephalomyelitis in the rat spinal cord.

    abstract::Increased evidence suggests that dysregulation of cholesterol metabolism may be a key event contributing to progression of multiple sclerosis (MS). Using an experimental autoimmune encephalomyelitis (EAE) model of MS we revealed specific changes in the mRNA and protein expression of key molecules involved in the maint...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02638-8

    authors: Lavrnja I,Smiljanic K,Savic D,Mladenovic-Djordjevic A,Tesovic K,Kanazir S,Pekovic S

    更新日期:2017-06-02 00:00:00

  • Nanofiber-expanded human CD34+ cells heal cutaneous wounds in streptozotocin-induced diabetic mice.

    abstract::Despite advances in diabetic wound care, the significant number of amputations that occur every year demands more effective therapeutics. Herein, we offer an aminated polyethersulfone nanofiber-expanded human umbilical cord blood-derived CD34+ cells (henceforth CD34+ cells) effective therapy, tested in cutaneous wound...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44932-7

    authors: Kanji S,Das M,Joseph M,Aggarwal R,Sharma SM,Ostrowski M,Pompili VJ,Mao HQ,Das H

    更新日期:2019-06-10 00:00:00

  • Testing the relationship between mimicry, trust and rapport in virtual reality conversations.

    abstract::People mimic each other's actions and postures during everyday interactions. It is widely believed this mimicry acts as a social glue, leading to increased rapport. We present two studies using virtual reality to rigorously test this hypothesis. In Study 1, 50 participants interacted with two avatars who either mimick...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35295

    authors: Hale J,Hamilton AF

    更新日期:2016-10-14 00:00:00

  • Improving vagal activity ameliorates cardiac fibrosis induced by angiotensin II: in vivo and in vitro.

    abstract::Cardiac remodeling is characterized by overactivity of the renin-angiotensin system (RAS) and withdrawal of vagal activity. We hypothesized that improving vagal activity could attenuate cardiac fibrosis induced by angiotensin II (Ang II) in vivo and in vitro. Rats were subjected to abdominal aorta constriction (AAC) w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17108

    authors: Liu JJ,Huang N,Lu Y,Zhao M,Yu XJ,Yang Y,Yang YH,Zang WJ

    更新日期:2015-11-24 00:00:00

  • Enhancing the methanol tolerance of platinum nanoparticles for the cathode reaction of direct methanol fuel cells through a geometric design.

    abstract::Mastery over the structure of nanoparticles might be an effective way to enhance their performance for a given application. Herein we demonstrate the design of cage-bell nanostructures to enhance the methanol tolerance of platinum (Pt) nanoparticles while remaining their catalytic activity for oxygen reduction reactio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep16219

    authors: Feng Y,Ye F,Liu H,Yang J

    更新日期:2015-11-18 00:00:00

  • γ-H2AX/53BP1/pKAP-1 foci and their linear tracks induced by in vitro exposure to radon and its progeny in human peripheral blood lymphocytes.

    abstract::The biodosimetric information is critical for evaluating the human health hazards caused by radon and its progeny. Here, we demonstrated that the formation of phosphorylated histone variant H2AX (γ-H2AX), p53-binding protein 1 (53BP1) and phosphorylated KRAB-associated protein 1 (pKAP-1) foci and their linear tracks i...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep38295

    authors: Ding D,Zhang Y,Wang J,Wang X,Fan D,He L,Zhang X,Gao Y,Li Q,Chen H

    更新日期:2016-12-06 00:00:00

  • Hybridizing salamanders experience accelerated diversification.

    abstract::Whether hybridization generates or erodes species diversity has long been debated, but to date most studies have been conducted at small taxonomic scales. Salamanders (order Caudata) represent a taxonomic order in which hybridization plays a prevalent ecological and evolutionary role. We employed a recently developed ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-63378-w

    authors: Patton AH,Margres MJ,Epstein B,Eastman J,Harmon LJ,Storfer A

    更新日期:2020-04-16 00:00:00

  • Ginsenoside Rh2 inhibits hepatocellular carcinoma through β-catenin and autophagy.

    abstract::Hepatocellular carcinoma (HCC) is the most common liver cancer, with a very poor prognosis. There is an urgent need for an effective therapy for HCC. Ginsenoside Rh2 (GRh2) has been shown to significantly inhibit growth of some types of cancer, whereas its effects on HCC have not been examined. Here, we treated human ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19383

    authors: Yang Z,Zhao T,Liu H,Zhang L

    更新日期:2016-01-19 00:00:00

  • SDE5, a putative RNA export protein, participates in plant innate immunity through a flagellin-dependent signaling pathway in Arabidopsis.

    abstract::In eukaryotes, RNA silencing, mediated by small interfering RNAs, is an evolutionarily widespread and versatile silencing mechanism that plays an important role in various biological processes. Increasing evidences suggest that various components of RNA silencing pathway are involved in plant defense machinery against...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-07918-x

    authors: Uddin MN,Akhter S,Chakraborty R,Baek JH,Cha JY,Park SJ,Kang H,Kim WY,Lee SY,Mackey D,Kim MG

    更新日期:2017-08-29 00:00:00

  • Quantitative comparison of tumor delivery for multiple targeted nanoparticles simultaneously by multiplex ICP-MS.

    abstract::Given the rapidly expanding library of disease biomarkers and targeting agents, the number of unique targeted nanoparticles is growing exponentially. The high variability and expense of animal testing often makes it unfeasible to examine this large number of nanoparticles in vivo. This often leads to the investigation...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep05840

    authors: Elias A,Crayton SH,Warden-Rothman R,Tsourkas A

    更新日期:2014-07-28 00:00:00

  • Topographic heterogeneity effect on the accumulation of Fukushima-derived radiocesium on forest floor driven by biologically mediated processes.

    abstract::The accident at the Fukushima Daiichi nuclear power plant caused serious radiocesium ((137)Cs) contamination of forest ecosystems located in mountainous and hilly regions with steep terrain. To understand topographic effects on the redistribution and accumulation of (137)Cs on forest floor, we investigated the distrib...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep06853

    authors: Koarashi J,Atarashi-Andoh M,Takeuchi E,Nishimura S

    更新日期:2014-10-31 00:00:00

  • Calmodulin is responsible for Ca2+-dependent regulation of TRPA1 Channels.

    abstract::TRPA1 is a Ca2+-permeable ion channel involved in many sensory disorders such as pain, itch and neuropathy. Notably, the function of TRPA1 depends on Ca2+, with low Ca2+ potentiating and high Ca2+ inactivating TRPA1. However, it remains unknown how Ca2+ exerts such contrasting effects. Here, we show that Ca2+ regulate...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45098

    authors: Hasan R,Leeson-Payne AT,Jaggar JH,Zhang X

    更新日期:2017-03-23 00:00:00

  • Induction of Germ Cell-like Cells from Porcine Induced Pluripotent Stem Cells.

    abstract::The ability to generate germ cells from pluripotent stem cells (PSCs) is valuable for human regenerative medicine and animal breeding. Germ cell-like cells (GCLCs) have been differentiated from mouse and human PSCs, but not from porcine PSCs, which are considered an ideal model for stem cell applications. Here, we dev...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27256

    authors: Wang H,Xiang J,Zhang W,Li J,Wei Q,Zhong L,Ouyang H,Han J

    更新日期:2016-06-06 00:00:00

  • Novel method for evaluating the indication for endoscopic papillectomy in patients with ampullary adenocarcinoma.

    abstract::This study aimed to determine the clinicopathological features of the subtypes of ampullary carcinoma (AC) to explore the indications for endoscopic papillectomy (EP) in early AC. Fifty-seven patients with AC who underwent curative resection were retrospectively reviewed. The 0/IA stages were significantly more common...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79836-4

    authors: Yamamoto K,Itoi T,Nagata N,Sofuni A,Tsuchiya T,Ishii K,Tanaka R,Tonozuka R,Honjo M,Mukai S,Asai Y,Matsunami Y,Yamaguchi H,Matsubayashi J,Joyama E,Nagakawa Y

    更新日期:2021-01-12 00:00:00

  • A Phospholipid Profile at 4 Months Predicts the Onset of Celiac Disease in at-Risk Infants.

    abstract::Celiac disease (CeD) is a multifactorial disease influenced by both genetic and environmental risk factors. CeD genetic components are mainly due to HLA class II genes, which account for approximately 40% of the disease heritability. The environmental factor is linked to gliadin ingestion. Despite genetic and epigenet...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50735-7

    authors: Auricchio R,Galatola M,Cielo D,Amoresano A,Caterino M,De Vita E,Illiano A,Troncone R,Greco L,Ruoppolo M

    更新日期:2019-10-04 00:00:00

  • The characteristic, antioxidative and multiple organ protective of acidic-extractable mycelium polysaccharides by Pleurotus eryngii var. tuoliensis on high-fat emulsion induced-hypertriglyceridemic mice.

    abstract::The antioxidant and multiple organ protection effects of acid- extracted mycelia polysaccharides (Ac-MPS) from Pleurotus eryngii var. tuoliensis on HFE-induced hypertriglyceridemic mice were investigated. The results showed that Ac-MPS have potential ability to relieve the hypertriglyceridemia and preventing oxidative...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-35706-8

    authors: Gao Z,Lai Q,Yang Q,Xu N,Liu W,Zhao F,Liu X,Zhang C,Zhang J,Jia L

    更新日期:2018-11-30 00:00:00

  • Manassantin B shows antiviral activity against coxsackievirus B3 infection by activation of the STING/TBK-1/IRF3 signalling pathway.

    abstract::Coxsackievirus B3 (CVB3) is an important human pathogen associated with the development of acute pancreatitis, myocarditis, and type 1 diabetes. Currently, no vaccines or antiviral therapeutics are approved for the prevention and treatment of CVB3 infection. We found that Saururus chinensis Baill extract showed critic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45868-8

    authors: Song JH,Ahn JH,Kim SR,Cho S,Hong EH,Kwon BE,Kim DE,Choi M,Choi HJ,Cha Y,Chang SY,Ko HJ

    更新日期:2019-06-28 00:00:00

  • Osteogenic impact of pro-apoptotic caspase inhibitors in MC3T3-E1 cells.

    abstract::Caspases are proteases traditionally associated with inflammation and cell death. Recently, they have also been shown to modulate cell proliferation and differentiation. The aim of the current research was to search for osteogenic molecules affected by caspase inhibition and to specify the individual caspases critical...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64294-9

    authors: Kratochvílová A,Veselá B,Ledvina V,Švandová E,Klepárník K,Dadáková K,Beneš P,Matalová E

    更新日期:2020-05-04 00:00:00

  • Conformational changes influence clogging behavior of micrometer-sized microgels in idealized multiple constrictions.

    abstract::Clogging of porous media by soft particles has become a subject of extensive research in the last years and the understanding of the clogging mechanisms is of great importance for process optimization. The rise in the utilization of microfluidic devices brought the possibility to simulate membrane filtration and perfo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45791-y

    authors: Bouhid de Aguiar I,Meireles M,Bouchoux A,Schroën K

    更新日期:2019-06-25 00:00:00

  • Fast Collisional Lipid Transfer Among Polymer-Bounded Nanodiscs.

    abstract::Some styrene/maleic acid (SMA) copolymers solubilise membrane lipids and proteins to form polymer-bounded nanodiscs termed SMA/lipid particles (SMALPs). Although SMALPs preserve a lipid-bilayer core, they appear to be more dynamic than other membrane mimics. We used time-resolved Förster resonance energy transfer and ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45875

    authors: Cuevas Arenas R,Danielczak B,Martel A,Porcar L,Breyton C,Ebel C,Keller S

    更新日期:2017-04-05 00:00:00

  • Fasting activates macroautophagy in neurons of Alzheimer's disease mouse model but is insufficient to degrade amyloid-beta.

    abstract::We developed a new technique to observe macroautophagy in the brain in vivo, and examined whether fasting induced macroautophagy in neurons and how the induction was different between Alzheimer's disease (AD) model and control mice. Lentivirus for EGFP-LC3 injected into the brain successfully visualized autophagosome ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12115

    authors: Chen X,Kondo K,Motoki K,Homma H,Okazawa H

    更新日期:2015-07-14 00:00:00

  • KANSL2 and MBNL3 are regulators of pancreatic ductal adenocarcinoma invasion.

    abstract::Pancreatic ductal adenocarcinoma (PDAC) is one of the most lethal forms of cancer. One major reason for this is that PDAC quickly metastasizes to other organs, thereby making its treatment difficult. The molecular machinery driving PDAC metastasis is still poorly understood. In this study, we applied an unbiased appro...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58448-y

    authors: Oladimeji PO,Bakke J,Wright WC,Chen T

    更新日期:2020-01-30 00:00:00

  • Contrasting seasonal patterns of telomere dynamics in response to environmental conditions in the ectothermic sand lizard, Lacerta agilis.

    abstract::Telomeres, the protective, terminal parts of the chromosomes erode during cell division and as a result of oxidative damage by reactive oxygen species (ROS). Ectotherms rely on the ambient temperature for maintaining temperature-dependent metabolic rate, regulated through behavioural thermoregulation. Their temperatur...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57084-5

    authors: Axelsson J,Wapstra E,Miller E,Rollings N,Olsson M

    更新日期:2020-01-13 00:00:00

  • Destination of apyrene sperm following migration from the bursa copulatrix in the monandrous swallowtail butterfly Byasa alcinous.

    abstract::Most male lepidopterans produce fertile eupyrene sperm and non-fertile apyrene sperm, both of which are transferred to the female in a spermatophore during mating. Apyrene sperm outnumbers eupyrene sperm and both sperm types migrate from the bursa copulatrix to the spermatheca after mating. While eupyrene sperm are ma...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77683-x

    authors: Konagaya T,Idogawa N,Watanabe M

    更新日期:2020-12-01 00:00:00

  • Multidecade Mortality and a Homolog of Hepatitis C Virus in Bald Eagles (Haliaeetus leucocephalus), the National Bird of the USA.

    abstract::The bald eagle (Haliaeetus leucocephalus) once experienced near-extinction but has since rebounded. For decades, bald eagles near the Wisconsin River, USA, have experienced a lethal syndrome with characteristic clinical and pathological features but unknown etiology. Here, we describe a novel hepacivirus-like virus (F...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50580-8

    authors: Goldberg TL,Sibley SD,Pinkerton ME,Dunn CD,Long LJ,White LC,Strom SM

    更新日期:2019-10-18 00:00:00

  • Differential binding affinity of tau repeat region R2 with neuronal-specific β-tubulin isotypes.

    abstract::Tau is a microtubule-associated protein whose C-terminal domain consisting of four repeat regions R1, R2, R3 and R4 binds to microtubules to stabilize them. In several neurodegenerative diseases, tau detaches from microtubules to form insoluble aggregates leading to tauopathy. Microtubules are made up of αβ tubulin su...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-47249-7

    authors: Bhandare VV,Kumbhar BV,Kunwar A

    更新日期:2019-07-25 00:00:00