Author Correction: Hybrid de novo whole-genome assembly and annotation of the model tapeworm Hymenolepis diminuta.


:An amendment to this paper has been published and can be accessed via a link at the top of the paper.


Sci Data


Scientific data


Nowak RM,Jastrzębski JP,Kuśmirek W,Sałamatin R,Rydzanicz M,Sobczyk-Kopcioł A,Sulima-Celińska A,Paukszto Ł,Makowczenko KG,Płoski R,Tkach VV,Basałaj K,Młocicki D




Has Abstract


2020-02-10 00:00:00












  • One millennium of historical freshwater fish occurrence data for Portuguese rivers and streams.

    abstract::The insights that historical evidence of human presence and man-made documents provide are unique. For example, using historical data may be critical to adequately understand the ecological requirements of species. However, historical information about freshwater species distribution remains largely a knowledge gap. I...

    journal_title:Scientific data

    pub_type: 历史文章,杂志文章


    authors: Duarte G,Moreira M,Branco P,da Costa L,Ferreira MT,Segurado P

    更新日期:2018-08-14 00:00:00

  • CU-BEMS, smart building electricity consumption and indoor environmental sensor datasets.

    abstract::This paper describes the release of the detailed building operation data, including electricity consumption and indoor environmental measurements, of the seven-story 11,700-m2 office building located in Bangkok, Thailand. The electricity consumption data (kW) are that of individual air conditioning units, lighting, an...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Pipattanasomporn M,Chitalia G,Songsiri J,Aswakul C,Pora W,Suwankawin S,Audomvongseree K,Hoonchareon N

    更新日期:2020-07-20 00:00:00

  • Whole genome characterization of sequence diversity of 15,220 Icelanders.

    abstract::Understanding of sequence diversity is the cornerstone of analysis of genetic disorders, population genetics, and evolutionary biology. Here, we present an update of our sequencing set to 15,220 Icelanders who we sequenced to an average genome-wide coverage of 34X. We identified 39,020,168 autosomal variants passing G...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Jónsson H,Sulem P,Kehr B,Kristmundsdottir S,Zink F,Hjartarson E,Hardarson MT,Hjorleifsson KE,Eggertsson HP,Gudjonsson SA,Ward LD,Arnadottir GA,Helgason EA,Helgason H,Gylfason A,Jonasdottir A,Jonasdottir A,Rafnar T,Bes

    更新日期:2017-09-21 00:00:00

  • A draft genome assembly of spotted hyena, Crocuta crocuta.

    abstract::The spotted hyena (Crocuta crocuta), one of the largest terrestrial predators native to sub-Saharan Africa, is well known for its matriarchal social system and large-sized social group in which larger females dominate smaller males. Spotted hyenas are highly adaptable predators as they both actively hunt prey and scav...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Yang C,Li F,Xiong Z,Koepfli KP,Ryder O,Perelman P,Li Q,Zhang G

    更新日期:2020-04-28 00:00:00

  • Outlier analyses of the Protein Data Bank archive using a probability-density-ranking approach.

    abstract::Outlier analyses are central to scientific data assessments. Conventional outlier identification methods do not work effectively for Protein Data Bank (PDB) data, which are characterized by heavy skewness and the presence of bounds and/or long tails. We have developed a data-driven nonparametric method to identify out...

    journal_title:Scientific data



    authors: Shao C,Liu Z,Yang H,Wang S,Burley SK

    更新日期:2018-12-11 00:00:00

  • An annotated fluorescence image dataset for training nuclear segmentation methods.

    abstract::Fully-automated nuclear image segmentation is the prerequisite to ensure statistically significant, quantitative analyses of tissue preparations,applied in digital pathology or quantitative microscopy. The design of segmentation methods that work independently of the tissue type or preparation is complex, due to varia...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Kromp F,Bozsaky E,Rifatbegovic F,Fischer L,Ambros M,Berneder M,Weiss T,Lazic D,Dörr W,Hanbury A,Beiske K,Ambros PF,Ambros IM,Taschner-Mandl S

    更新日期:2020-08-11 00:00:00

  • Fractionation of parietal function in bistable perception probed with concurrent TMS-EEG.

    abstract::When visual input has conflicting interpretations, conscious perception can alternate spontaneously between these possible interpretations. This is called bistable perception. Previous neuroimaging studies have indicated the involvement of two right parietal areas in resolving perceptual ambiguity (ant-SPLr and post-S...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Schauer G,Chang A,Schwartzman D,Rae CL,Iriye H,Seth AK,Kanai R

    更新日期:2016-08-16 00:00:00

  • Viruses of the Nahant Collection, characterization of 251 marine Vibrionaceae viruses.

    abstract::Viruses are highly discriminating in their interactions with host cells and are thought to play a major role in maintaining diversity of environmental microbes. However, large-scale ecological and genomic studies of co-occurring virus-host pairs, required to characterize the mechanistic and genomic foundations of viru...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Kauffman KM,Brown JM,Sharma RS,VanInsberghe D,Elsherbini J,Polz M,Kelly L

    更新日期:2018-07-03 00:00:00

  • Impacts of elevated atmospheric CO₂ on nutrient content of important food crops.

    abstract::One of the many ways that climate change may affect human health is by altering the nutrient content of food crops. However, previous attempts to study the effects of increased atmospheric CO2 on crop nutrition have been limited by small sample sizes and/or artificial growing conditions. Here we present data from a me...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Dietterich LH,Zanobetti A,Kloog I,Huybers P,Leakey AD,Bloom AJ,Carlisle E,Fernando N,Fitzgerald G,Hasegawa T,Holbrook NM,Nelson RL,Norton R,Ottman MJ,Raboy V,Sakai H,Sartor KA,Schwartz J,Seneweera S,Usui Y,Yoshina

    更新日期:2015-07-21 00:00:00

  • An annual time series of weekly size-resolved aerosol properties in the megacity of Metro Manila, Philippines.

    abstract::Size-resolved aerosol samples were collected in Metro Manila between July 2018 and October 2019. Two Micro-Orifice Uniform Deposit Impactors (MOUDI) were deployed at Manila Observatory in Quezon City, Metro Manila with samples collected on a weekly basis for water-soluble speciation and mass quantification. Additional...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Stahl C,Cruz MT,Bañaga PA,Betito G,Braun RA,Aghdam MA,Cambaliza MO,Lorenzo GR,MacDonald AB,Pabroa PC,Yee JR,Simpas JB,Sorooshian A

    更新日期:2020-04-29 00:00:00

  • Long-term surveys of age structure in 13 ungulate and one ostrich species in the Serengeti, 1926-2018.

    abstract::The Serengeti ecosystem spans an extensive network of protected areas in Tanzania, eastern Africa, and a UNESCO Wold Heritage Site. It is home to some of the largest animal migrations on the planet. Here, we describe a dataset consisting of the sample counts of three age classes (infant, juvenile and adult) of 13 ungu...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Rogy P,Sinclair ARE

    更新日期:2020-10-21 00:00:00

  • If these data could talk.

    abstract::In the last few decades, data-driven methods have come to dominate many fields of scientific inquiry. Open data and open-source software have enabled the rapid implementation of novel methods to manage and analyze the growing flood of data. However, it has become apparent that many scientific fields exhibit distressin...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Pasquier T,Lau MK,Trisovic A,Boose ER,Couturier B,Crosas M,Ellison AM,Gibson V,Jones CR,Seltzer M

    更新日期:2017-09-05 00:00:00

  • A band-gap database for semiconducting inorganic materials calculated with hybrid functional.

    abstract::Semiconducting inorganic materials with band gaps ranging between 0 and 5 eV constitute major components in electronic, optoelectronic and photovoltaic devices. Since the band gap is a primary material property that affects the device performance, large band-gap databases are useful in selecting optimal materials in e...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Kim S,Lee M,Hong C,Yoon Y,An H,Lee D,Jeong W,Yoo D,Kang Y,Youn Y,Han S

    更新日期:2020-11-11 00:00:00

  • dbPSP 2.0, an updated database of protein phosphorylation sites in prokaryotes.

    abstract::In prokaryotes, protein phosphorylation plays a critical role in regulating a broad spectrum of biological processes and occurs mainly on various amino acids, including serine (S), threonine (T), tyrosine (Y), arginine (R), aspartic acid (D), histidine (H) and cysteine (C) residues of protein substrates. Through liter...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Shi Y,Zhang Y,Lin S,Wang C,Zhou J,Peng D,Xue Y

    更新日期:2020-05-29 00:00:00

  • Corrigendum: High-throughput RNAi screen for essential genes and drug synergistic combinations in colorectal cancer.

    abstract::This corrects the article DOI: 10.1038/sdata.2017.139. ...

    journal_title:Scientific data

    pub_type: 杂志文章,已发布勘误


    authors: Williams SP,Barthorpe AS,Lightfoot H,Garnett MJ,McDermott U

    更新日期:2018-10-09 00:00:00

  • Publisher Correction: The Scales Project, a cross-national dataset on the interpretation of thermal perception scales.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Scientific data

    pub_type: 杂志文章,已发布勘误


    authors: Schweiker M,Abdul-Zahra A,André M,Al-Atrash F,Al-Khatri H,Alprianti RR,Alsaad H,Amin R,Ampatzi E,Arsano AY,Azadeh M,Azar E,Bahareh B,Batagarawa A,Becker S,Buonocore C,Cao B,Choi JH,Chun C,Daanen H,Damiati SA,Dan

    更新日期:2020-01-06 00:00:00

  • flEECe, an energy use and occupant behavior dataset for net-zero energy affordable senior residential buildings.

    abstract::The behaviors of building occupants have continued to perplex scholars for years in our attempts to develop models for energy efficient housing. Building simulations, project delivery approaches, policies, and more have fell short of their optimistic goals due to the complexity of human behavior. As a part of a multip...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Paige F,Agee P,Jazizadeh F

    更新日期:2019-11-26 00:00:00

  • Genome-wide siRNA screen of genes regulating the LPS-induced TNF-α response in human macrophages.

    abstract::The mammalian innate immune system senses many bacterial stimuli through the toll-like receptor (TLR) family. Activation of the TLR4 receptor by bacterial lipopolysaccharide (LPS) is the most widely studied TLR pathway due to its central role in host responses to gram-negative bacterial infection and its contribution ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Sun J,Katz S,Dutta B,Wang Z,Fraser ID

    更新日期:2017-03-01 00:00:00

  • De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris.

    abstract::Orchids are renowned for their spectacular flowers and ecological adaptations. After the sequencing of the genome of the tropical epiphytic orchid Phalaenopsis equestris, we combined Illumina HiSeq2000 for RNA-Seq and Trinity for de novo assembly to characterize the transcriptomes for 11 diverse P. equestris tissues r...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Niu SC,Xu Q,Zhang GQ,Zhang YQ,Tsai WC,Hsu JL,Liang CK,Luo YB,Liu ZJ

    更新日期:2016-09-27 00:00:00

  • Survey-based socio-economic data from slums in Bangalore, India.

    abstract::In 2010, an estimated 860 million people were living in slums worldwide, with around 60 million added to the slum population between 2000 and 2010. In 2011, 200 million people in urban Indian households were considered to live in slums. In order to address and create slum development programmes and poverty alleviation...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Roy D,Palavalli B,Menon N,King R,Pfeffer K,Lees M,Sloot PMA

    更新日期:2018-01-09 00:00:00

  • Extended regions of suspected mis-assembly in the rat reference genome.

    abstract::We performed whole-genome sequencing for eight inbred rat strains commonly used in genetic mapping studies. They are the founders of the NIH heterogeneous stock (HS) outbred colony. We provide their sequences and variant calls to the rat genomics community. When analyzing the variant calls we identified regions with u...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Ramdas S,Ozel AB,Treutelaar MK,Holl K,Mandel M,Woods LCS,Li JZ

    更新日期:2019-04-23 00:00:00

  • The FLUXCOM ensemble of global land-atmosphere energy fluxes.

    abstract::Although a key driver of Earth's climate system, global land-atmosphere energy fluxes are poorly constrained. Here we use machine learning to merge energy flux measurements from FLUXNET eddy covariance towers with remote sensing and meteorological data to estimate global gridded net radiation, latent and sensible heat...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Jung M,Koirala S,Weber U,Ichii K,Gans F,Camps-Valls G,Papale D,Schwalm C,Tramontana G,Reichstein M

    更新日期:2019-05-27 00:00:00

  • The effects of sequencing platforms on phylogenetic resolution in 16 S rRNA gene profiling of human feces.

    abstract::High-quality and high-throughput sequencing technologies are required for therapeutic and diagnostic analyses of human gut microbiota. Here, we evaluated the advantages and disadvantages of the various commercial sequencing platforms for studying human gut microbiota. We generated fecal bacterial sequences from 170 Ko...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Whon TW,Chung WH,Lim MY,Song EJ,Kim PS,Hyun DW,Shin NR,Bae JW,Nam YD

    更新日期:2018-04-24 00:00:00

  • Construction of the REACHES climate database based on historical documents of China.

    abstract::This paper describes the methodology of an ongoing project of constructing an East Asian climate database REACHES based on Chinese historical documents. The record source is Compendium of Meteorological Records of China in the Last 3000 Years which collects meteorology and climate related records from mainly official ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Wang PK,Lin KE,Liao YC,Liao HM,Lin YS,Hsu CT,Hsu SM,Wan CW,Lee SY,Fan IC,Tan PH,Ting TT

    更新日期:2018-12-18 00:00:00

  • Multivariate time series dataset for space weather data analytics.

    abstract::We introduce and make openly accessible a comprehensive, multivariate time series (MVTS) dataset extracted from solar photospheric vector magnetograms in Spaceweather HMI Active Region Patch (SHARP) series. Our dataset also includes a cross-checked NOAA solar flare catalog that immediately facilitates solar flare pred...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Angryk RA,Martens PC,Aydin B,Kempton D,Mahajan SS,Basodi S,Ahmadzadeh A,Cai X,Filali Boubrahimi S,Hamdi SM,Schuh MA,Georgoulis MK

    更新日期:2020-07-10 00:00:00

  • Large-scale modeled contemporary and future water temperature estimates for 10774 Midwestern U.S. Lakes.

    abstract::Climate change has already influenced lake temperatures globally, but understanding future change is challenging. The response of lakes to changing climate drivers is complex due to the nature of lake-atmosphere coupling, ice cover, and stratification. To better understand the diversity of lake responses to climate ch...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Winslow LA,Hansen GJA,Read JS,Notaro M

    更新日期:2017-04-25 00:00:00

  • A high-content image-based drug screen of clinical compounds against cell transmission of adenovirus.

    abstract::Human adenoviruses (HAdVs) are fatal to immuno-suppressed individuals, but no effective anti-HAdV therapy is available. Here, we present a novel image-based high-throughput screening (HTS) platform, which scores the full viral replication cycle from virus entry to dissemination of progeny and second-round infections. ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Georgi F,Kuttler F,Murer L,Andriasyan V,Witte R,Yakimovich A,Turcatti G,Greber UF

    更新日期:2020-08-12 00:00:00

  • A database of human gait performance on irregular and uneven surfaces collected by wearable sensors.

    abstract::Gait analysis has traditionally relied on laborious and lab-based methods. Data from wearable sensors, such as Inertial Measurement Units (IMU), can be analyzed with machine learning to perform gait analysis in real-world environments. This database provides data from thirty participants (fifteen males and fifteen fem...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Luo Y,Coppola SM,Dixon PC,Li S,Dennerlein JT,Hu B

    更新日期:2020-07-08 00:00:00

  • Spatial and temporal dynamics of multidimensional well-being, livelihoods and ecosystem services in coastal Bangladesh.

    abstract::Populations in resource dependent economies gain well-being from the natural environment, in highly spatially and temporally variable patterns. To collect information on this, we designed and implemented a 1586-household quantitative survey in the southwest coastal zone of Bangladesh. Data were collected on material, ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Adams H,Adger WN,Ahmad S,Ahmed A,Begum D,Lázár AN,Matthews Z,Rahman MM,Streatfield PK

    更新日期:2016-11-08 00:00:00

  • MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports.

    abstract::Chest radiography is an extremely powerful imaging modality, allowing for a detailed inspection of a patient's chest, but requires specialized training for proper interpretation. With the advent of high performance general purpose computer vision algorithms, the accurate automated analysis of chest radiographs is beco...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Johnson AEW,Pollard TJ,Berkowitz SJ,Greenbaum NR,Lungren MP,Deng CY,Mark RG,Horng S

    更新日期:2019-12-12 00:00:00