Author Correction: Hybrid de novo whole-genome assembly and annotation of the model tapeworm Hymenolepis diminuta.


:An amendment to this paper has been published and can be accessed via a link at the top of the paper.


Sci Data


Scientific data


Nowak RM,Jastrzębski JP,Kuśmirek W,Sałamatin R,Rydzanicz M,Sobczyk-Kopcioł A,Sulima-Celińska A,Paukszto Ł,Makowczenko KG,Płoski R,Tkach VV,Basałaj K,Młocicki D




Has Abstract


2020-02-10 00:00:00












  • Optical motion capture dataset of selected techniques in beginner and advanced Kyokushin karate athletes.

    abstract::Human motion capture is commonly used in various fields, including sport, to analyze, understand, and synthesize kinematic and kinetic data. Specialized computer vision and marker-based optical motion capture techniques constitute the gold-standard for accurate and robust human motion capture. The dataset presented co...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Szczęsna A,Błaszczyszyn M,Pawlyta M

    更新日期:2021-01-18 00:00:00

  • A test-retest dataset for assessing long-term reliability of brain morphology and resting-state brain activity.

    abstract::We present a test-retest dataset for evaluation of long-term reliability of measures from structural and resting-state functional magnetic resonance imaging (sMRI and rfMRI) scans. The repeated scan dataset was collected from 61 healthy adults in two sessions using highly similar imaging parameters at an interval of 1...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Huang L,Huang T,Zhen Z,Liu J

    更新日期:2016-03-15 00:00:00

  • Construction of the REACHES climate database based on historical documents of China.

    abstract::This paper describes the methodology of an ongoing project of constructing an East Asian climate database REACHES based on Chinese historical documents. The record source is Compendium of Meteorological Records of China in the Last 3000 Years which collects meteorology and climate related records from mainly official ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Wang PK,Lin KE,Liao YC,Liao HM,Lin YS,Hsu CT,Hsu SM,Wan CW,Lee SY,Fan IC,Tan PH,Ting TT

    更新日期:2018-12-18 00:00:00

  • Draft genome of the big-headed turtle Platysternon megacephalum.

    abstract::The big-headed turtle, Platysternon megacephalum, as the sole member of the monotypic family Platysternidae, has a number of distinct characteristics including an extra-large head, long tail, flat carapace, and a preference for low water temperature environments. We performed whole genome sequencing, assembly, and gen...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Cao D,Wang M,Ge Y,Gong S

    更新日期:2019-05-16 00:00:00

  • Flow cytometry analysis of adrenoceptors expression in human adipose-derived mesenchymal stem/stromal cells.

    abstract::Mesenchymal stem/stromal cells (MSCs) were identified in most tissues of an adult organism. MSCs mediate physiological renewal, as well as regulation of tissue homeostasis, reparation and regeneration. Functions of MSCs are regulated by endocrine and neuronal signals, and noradrenaline is one of the most important MSC...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Tyurin-Kuzmin PA,Dyikanov DT,Fadeeva JI,Sysoeva VY,Kalinina NI

    更新日期:2018-10-02 00:00:00

  • Time series of heat demand and heat pump efficiency for energy system modeling.

    abstract::With electric heat pumps substituting for fossil-fueled alternatives, the temporal variability of their power consumption becomes increasingly important to the electricity system. To easily include this variability in energy system analyses, this paper introduces the "When2Heat" dataset comprising synthetic national t...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Ruhnau O,Hirth L,Praktiknjo A

    更新日期:2019-10-01 00:00:00

  • Arbovirus emergence in the temperate city of Córdoba, Argentina, 2009-2018.

    abstract::The distribution of arbovirus disease transmission is expanding from the tropics and subtropics into temperate regions worldwide. The temperate city of Córdoba, Argentina has been experiencing the emergence of dengue virus, transmitted by the mosquito Aedes aegypti, since 2009, when autochthonous transmission of the v...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Robert MA,Tinunin DT,Benitez EM,Ludueña-Almeida FF,Romero M,Stewart-Ibarra AM,Estallo EL

    更新日期:2019-11-21 00:00:00

  • Corrigendum: High-throughput RNAi screen for essential genes and drug synergistic combinations in colorectal cancer.

    abstract::This corrects the article DOI: 10.1038/sdata.2017.139. ...

    journal_title:Scientific data

    pub_type: 杂志文章,已发布勘误


    authors: Williams SP,Barthorpe AS,Lightfoot H,Garnett MJ,McDermott U

    更新日期:2018-10-09 00:00:00

  • Paired rRNA-depleted and polyA-selected RNA sequencing data and supporting multi-omics data from human T cells.

    abstract::Both poly(A) enrichment and ribosomal RNA depletion are commonly used for RNA sequencing. Either has its advantages and disadvantages that may lead to biases in the downstream analyses. To better access these effects, we carried out both ribosomal RNA-depleted and poly(A)-selected RNA-seq for CD4+ T naive cells isolat...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Chen L,Yang R,Kwan T,Tang C,Watt S,Zhang Y,Bourque G,Ge B,Downes K,Frontini M,Ouwehand WH,Lin JW,Soranzo N,Pastinen T,Chen L

    更新日期:2020-11-09 00:00:00

  • The pediatric template of brain perfusion.

    abstract::Magnetic resonance imaging (MRI) captures the dynamics of brain development with multiple modalities that quantify both structure and function. These measurements may yield valuable insights into the neural patterns that mark healthy maturation or that identify early risk for psychiatric disorder. The Pediatric Templa...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Avants BB,Duda JT,Kilroy E,Krasileva K,Jann K,Kandel BT,Tustison NJ,Yan L,Jog M,Smith R,Wang Y,Dapretto M,Wang DJ

    更新日期:2015-02-03 00:00:00

  • Transcriptome data of temporal and cingulate cortex in the Rett syndrome brain.

    abstract::Rett syndrome is an X-linked neurodevelopmental disorder caused by mutation in the methyl-CpG-binding protein 2 gene (MECP2) in the majority of cases. We describe an RNA sequencing dataset of postmortem brain tissue samples from four females clinically diagnosed with Rett syndrome and four age-matched female donors. T...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Aldinger KA,Timms AE,MacDonald JW,McNamara HK,Herstein JS,Bammler TK,Evgrafov OV,Knowles JA,Levitt P

    更新日期:2020-06-19 00:00:00

  • Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells.

    abstract::Ataxin-1 mutation, arising from a polyglutamine (polyQ) tract expansion, is the underlying genetic cause of the late-onset neurodegenerative disease Spinocerebellar ataxia type 1 (SCA1). To identify protein partners of polyQ-ataxin-1 in neuronal cells under control or stress conditions, here we report our complementar...

    journal_title:Scientific data



    authors: Zhang S,Williamson NA,Bogoyevitch MA

    更新日期:2018-11-20 00:00:00

  • One millennium of historical freshwater fish occurrence data for Portuguese rivers and streams.

    abstract::The insights that historical evidence of human presence and man-made documents provide are unique. For example, using historical data may be critical to adequately understand the ecological requirements of species. However, historical information about freshwater species distribution remains largely a knowledge gap. I...

    journal_title:Scientific data

    pub_type: 历史文章,杂志文章


    authors: Duarte G,Moreira M,Branco P,da Costa L,Ferreira MT,Segurado P

    更新日期:2018-08-14 00:00:00

  • Data for training and testing radiation detection algorithms in an urban environment.

    abstract::The detection, identification, and localization of illicit nuclear materials in urban environments is of utmost importance for national security. Most often, the process of performing these operations consists of a team of trained individuals equipped with radiation detection devices that have built-in algorithms to a...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Ghawaly JM Jr,Nicholson AD,Peplow DE,Anderson-Cook CM,Myers KL,Archer DE,Willis MJ,Quiter BJ

    更新日期:2020-10-05 00:00:00

  • Transcriptome dataset of human corneal endothelium based on ribosomal RNA-depleted RNA-Seq data.

    abstract::The corneal endothelium maintains corneal transparency; consequently, damage to this endothelium by a number of pathological conditions results in severe vision loss. Publicly available expression databases of human tissues are useful for investigating the pathogenesis of diseases and for developing new therapeutic mo...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Tokuda Y,Okumura N,Komori Y,Hanada N,Tashiro K,Koizumi N,Nakano M

    更新日期:2020-11-20 00:00:00

  • A database of marine larval fish assemblages in Australian temperate and subtropical waters.

    abstract::Larval fishes are a useful metric of marine ecosystem state and change, as well as species-specific patterns in phenology. The high level of taxonomic expertise required to identify larval fishes to species level, and the considerable effort required to collect samples, make these data very valuable. Here we collate 3...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Smith JA,Miskiewicz AG,Beckley LE,Everett JD,Garcia V,Gray CA,Holliday D,Jordan AR,Keane J,Lara-Lopez A,Leis JM,Matis PA,Muhling BA,Neira FJ,Richardson AJ,Smith KA,Swadling KM,Syahailatua A,Taylor MD,van Ruth PD,W

    更新日期:2018-10-16 00:00:00

  • Multiscale dynamic human mobility flow dataset in the U.S. during the COVID-19 epidemic.

    abstract::Understanding dynamic human mobility changes and spatial interaction patterns at different geographic scales is crucial for assessing the impacts of non-pharmaceutical interventions (such as stay-at-home orders) during the COVID-19 pandemic. In this data descriptor, we introduce a regularly-updated multiscale dynamic ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Kang Y,Gao S,Liang Y,Li M,Rao J,Kruse J

    更新日期:2020-11-12 00:00:00

  • Transcriptome sequencing, molecular markers, and transcription factor discovery of Platanus acerifolia in the presence of Corythucha ciliata.

    abstract::The London Planetree (Platanus acerifolia) are present throughout the world. The tree is considered a greening plant and is commonly planted in streets, parks, and courtyards. The Sycamore lace bug (Corythucha ciliata) is a serious pest of this tree. To determine the molecular mechanism behind the interaction between ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Li F,Wu C,Gao M,Jiao M,Qu C,Gonzalez-Uriarte A,Luo C

    更新日期:2019-07-22 00:00:00

  • De novo transcriptome assembly databases for the butterfly orchid Phalaenopsis equestris.

    abstract::Orchids are renowned for their spectacular flowers and ecological adaptations. After the sequencing of the genome of the tropical epiphytic orchid Phalaenopsis equestris, we combined Illumina HiSeq2000 for RNA-Seq and Trinity for de novo assembly to characterize the transcriptomes for 11 diverse P. equestris tissues r...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Niu SC,Xu Q,Zhang GQ,Zhang YQ,Tsai WC,Hsu JL,Liang CK,Luo YB,Liu ZJ

    更新日期:2016-09-27 00:00:00

  • If these data could talk.

    abstract::In the last few decades, data-driven methods have come to dominate many fields of scientific inquiry. Open data and open-source software have enabled the rapid implementation of novel methods to manage and analyze the growing flood of data. However, it has become apparent that many scientific fields exhibit distressin...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Pasquier T,Lau MK,Trisovic A,Boose ER,Couturier B,Crosas M,Ellison AM,Gibson V,Jones CR,Seltzer M

    更新日期:2017-09-05 00:00:00

  • The FLUXCOM ensemble of global land-atmosphere energy fluxes.

    abstract::Although a key driver of Earth's climate system, global land-atmosphere energy fluxes are poorly constrained. Here we use machine learning to merge energy flux measurements from FLUXNET eddy covariance towers with remote sensing and meteorological data to estimate global gridded net radiation, latent and sensible heat...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Jung M,Koirala S,Weber U,Ichii K,Gans F,Camps-Valls G,Papale D,Schwalm C,Tramontana G,Reichstein M

    更新日期:2019-05-27 00:00:00

  • De novo transcriptomes of 14 gammarid individuals for proteogenomic analysis of seven taxonomic groups.

    abstract::Gammarids are amphipods found worldwide distributed in fresh and marine waters. They play an important role in aquatic ecosystems and are well established sentinel species in ecotoxicology. In this study, we sequenced the transcriptomes of a male individual and a female individual for seven different taxonomic groups ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Cogne Y,Degli-Esposti D,Pible O,Gouveia D,François A,Bouchez O,Eché C,Ford A,Geffard O,Armengaud J,Chaumot A,Almunia C

    更新日期:2019-09-27 00:00:00

  • Epigenetic and transcriptional profiling of triple negative breast cancer.

    abstract::The human HCC1806 cell line is frequently used as a preclinical model for triple negative breast cancer (TNBC). Given that dysregulated epigenetic mechanisms are involved in cancer pathogenesis, emerging therapeutic strategies target chromatin regulators, such as histone deacetylases. A comprehensive understanding of ...

    journal_title:Scientific data



    authors: Perreault AA,Sprunger DM,Venters BJ

    更新日期:2019-03-05 00:00:00

  • Monitoring microbial responses to ocean deoxygenation in a model oxygen minimum zone.

    abstract::Today in Scientific Data, two compendia of geochemical and multi-omic sequence information (DNA, RNA, protein) generated over almost a decade of time series monitoring in a seasonally anoxic coastal marine setting are presented to the scientific community. These data descriptors introduce a model ecosystem for the stu...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Hallam SJ,Torres-Beltrán M,Hawley AK

    更新日期:2017-10-31 00:00:00

  • MIMIC-CXR, a de-identified publicly available database of chest radiographs with free-text reports.

    abstract::Chest radiography is an extremely powerful imaging modality, allowing for a detailed inspection of a patient's chest, but requires specialized training for proper interpretation. With the advent of high performance general purpose computer vision algorithms, the accurate automated analysis of chest radiographs is beco...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Johnson AEW,Pollard TJ,Berkowitz SJ,Greenbaum NR,Lungren MP,Deng CY,Mark RG,Horng S

    更新日期:2019-12-12 00:00:00

  • Building fault detection data to aid diagnostic algorithm creation and performance testing.

    abstract::It is estimated that approximately 4-5% of national energy consumption can be saved through corrections to existing commercial building controls infrastructure and resulting improvements to efficiency. Correspondingly, automated fault detection and diagnostics (FDD) algorithms are designed to identify the presence of ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Granderson J,Lin G,Harding A,Im P,Chen Y

    更新日期:2020-02-24 00:00:00

  • Corrigendum: Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.

    abstract::This corrects the article DOI: 10.1038/sdata.2017.37. ...

    journal_title:Scientific data

    pub_type: 杂志文章,已发布勘误


    authors: Jungbluth SP,Amend JP,Rappé MS

    更新日期:2017-07-04 00:00:00

  • Genome-wide siRNA screen of genes regulating the LPS-induced TNF-α response in human macrophages.

    abstract::The mammalian innate immune system senses many bacterial stimuli through the toll-like receptor (TLR) family. Activation of the TLR4 receptor by bacterial lipopolysaccharide (LPS) is the most widely studied TLR pathway due to its central role in host responses to gram-negative bacterial infection and its contribution ...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Sun J,Katz S,Dutta B,Wang Z,Fraser ID

    更新日期:2017-03-01 00:00:00

  • A comprehensive collection of systems biology data characterizing the host response to viral infection.

    abstract::The Systems Biology for Infectious Diseases Research program was established by the U.S. National Institute of Allergy and Infectious Diseases to investigate host-pathogen interactions at a systems level. This program generated 47 transcriptomic and proteomic datasets from 30 studies that investigate in vivo and in vi...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Aevermann BD,Pickett BE,Kumar S,Klem EB,Agnihothram S,Askovich PS,Bankhead A 3rd,Bolles M,Carter V,Chang J,Clauss TR,Dash P,Diercks AH,Eisfeld AJ,Ellis A,Fan S,Ferris MT,Gralinski LE,Green RR,Gritsenko MA,Hatta M

    更新日期:2014-10-14 00:00:00

  • An accurate registration of the BigBrain dataset with the MNI PD25 and ICBM152 atlases.

    abstract::Brain atlases that encompass detailed anatomical or physiological features are instrumental in the research and surgical planning of various neurological conditions. Magnetic resonance imaging (MRI) has played important roles in neuro-image analysis while histological data remain crucial as a gold standard to guide an...

    journal_title:Scientific data

    pub_type: 杂志文章


    authors: Xiao Y,Lau JC,Anderson T,DeKraker J,Collins DL,Peters T,Khan AR

    更新日期:2019-10-17 00:00:00