Next-generation sequencing of a human-animal reassortant G6P[14] rotavirus A strain from a child hospitalized with diarrhoea.


:We previously reported the VP4 and the VP7 genotypes of the first G6P[14] rotavirus strain (RVA/Human-wt/GHA/M0084/2010/G6P[14]) from the stool of an infant with diarrhoea in Ghana. In the current study, we obtained the complete genome sequences using Illumina MiSeq next-generation sequencing to enable us to determine the host species origin of the genes by phylogenetic analysis. The genotype constellation was G6-P[14]-I2-R2-C2-M2-A11-N2-T6-E2-H3. Phylogenetic analysis showed that M0084 was a reassortant strain from RVAs of both artiodactyl and human host species origin. The level of sequence identity of the individual genes of M0084 to other sequences in the GenBank ranged from 95.2 to 99.5%; however, there was no single strain from the GenBank database with a complete genome sequence that was highly similar to that of M0084. To help trace the source of such unique gene pools being introduced into human RVAs, it will be useful to examine RVA sequences from potential reservoirs such as sheep and goats, which are common domestic animals in this locality.


Arch Virol


Archives of virology


Damanka SA,Dennis FE,Lartey BL,Nyarko KM,Agbemabiese CA,Armah GE




Has Abstract


2020-04-01 00:00:00














  • Potential strategies for combating COVID-19.

    abstract::Coronavirus disease 2019, also known as COVID-19, is caused by a novel coronavirus named severe acute respiratory syndrome coronavirus 2, or SARS-CoV-2. The infection has now catapulted into a full-blown pandemic across the world, which has affected more than 2 million people and has led to approximately 150,000 fatal...

    journal_title:Archives of virology

    pub_type: 杂志文章,评审


    authors: Shamim S,Khan M,Kharaba ZJ,Ijaz M,Murtaza G

    更新日期:2020-11-01 00:00:00

  • Hepatitis E virus infection in chimpanzees: a retrospective analysis.

    abstract::Different patterns of disease were observed among 11 chimpanzees who were inoculated intravenously with hepatitis E virus (HEV) positive fecal specimens from four different outbreaks (Nepal 1981, Uzbekistan 1981, Pakistan 1985, and Mexico 1986). Five chimpanzees had marginal or no liver enzyme elevations within 70 day...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: McCaustland KA,Krawczynski K,Ebert JW,Balayan MS,Andjaparidze AG,Spelbring JE,Cook EH,Humphrey C,Yarbough PO,Favorov MO,Carson D,Bradley DW,Robertson BH

    更新日期:2000-01-01 00:00:00

  • Insertion of sequences into the 3' untranslated region of a replication-competent spleen necrosis virus vector disrupts env gene expression.

    abstract::The genomes of all replication-competent retroviruses contain cis-acting elements that regulate gene expression. However, the identities of many of these elements remain to be characterized. Inserting sequences into the 3' untranslated region of a replication-competent spleen necrosis virus (SNV) vector disrupted its ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Yin PD,Hu WS

    更新日期:1999-01-01 00:00:00

  • Reiterated sequences of herpes simplex virus type 1 (HSV-1) genome can serve as physical markers for the differentiation of HSV-1 strains.

    abstract::The stability of regions containing tandemly reiterated sequences in the S component of the herpes simplex virus type 1 (HSV-1) genome was determined, by comparing restriction fragments of the regions among sets of HSV-1 isolates derived from a single source. The 6 reiterations examined were grouped into three. Reiter...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Umene K,Yoshida M

    更新日期:1989-01-01 00:00:00

  • Cell-mediated infection of cervix derived epithelial cells with primary isolates of human immunodeficiency virus.

    abstract::We have previously demonstrated that HIV-infected transformed T-cells or monocytes adhere to monolayers of CD4-negative epithelial cells. Adhesion is soon followed by budding of HIV from infected mononuclear cells onto the surface of epithelial cells. Epithelial cells subsequently take up virus and become productively...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Tan X,Phillips DM

    更新日期:1996-01-01 00:00:00

  • Cassava Ivorian bacilliform virus is a member of the genus Anulavirus.

    abstract::The complete genomic sequence of Cassava Ivorian bacilliform virus (CIBV) is described. The virus has a genomic organization similar to that of pelargonium zonate spot virus (PZSV), the type member of the genus Anulavirus, but it is most closely related to a second, recently described, anulavirus, Amazon lily mild mot...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Scott SW,MacFarlane SA,McGavin WJ,Fargette D

    更新日期:2014-10-01 00:00:00

  • Homotypic interactions among bacteriophage phiKMV early proteins.

    abstract::Little is known about the bacteriophage proteins expressed immediately after infection of the host cell. Most of these early proteins are probably involved in bacteriophage-host interactions redirecting the bacterial metabolism to phage production. Interaction analysis of the first 16 phiKMV gene products (gp) identif...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Roucourt B,Chibeu A,Lecoutere E,Lavigne R,Volckaert G,Hertveldt K

    更新日期:2007-01-01 00:00:00

  • T-even-related bacteriophages as candidates for treatment of Escherichia coli urinary tract infections.

    abstract::Multidrug-resistant uropathogenic Escherichia coli (UPEC) is increasing gradually on a worldwide scale. We therefore examined the possibility of bacteriophage (phage) therapy for urinary tract infections (UTIs) caused by the UPEC strains as an alternative to chemotherapy. In addition to the well-known T4 phage, KEP10,...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Nishikawa H,Yasuda M,Uchiyama J,Rashel M,Maeda Y,Takemura I,Sugihara S,Ujihara T,Shimizu Y,Shuin T,Matsuzaki S

    更新日期:2008-01-01 00:00:00

  • Prevalence of human bocavirus 1 among people without gastroenteritis symptoms in South Korea between 2008 and 2010.

    abstract::To investigate the prevalence of human bocavirus (HBoV) among people without gastroenteritis symptoms in South Korea between 2008 and 2010, an epidemiological study was performed on fecal samples of 320 people aged 2 months to 91 years. The prevalence of HBoV-1 was 12.5 % (40/320) of the study population by PCR. Co-in...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Kim S

    更新日期:2014-10-01 00:00:00

  • Taxonomic position of sugarcane streak mosaic virus in the family Potyviridae.

    abstract::AcDNA library was generated from purified RNA of sugarcane streak mosaic virus--Andhra Pradesh (SCSMV-AP). Two overlapping clones covering 3160 nucleotides encoding partial CI, complete 6K2, VPg-NIa and NIb genes were sequenced. A comparison of this sequence along with the 3' terminal 1315 nucleotides of SCSMV-AP dete...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Hema M,Sreenivasulu P,Savithri HS

    更新日期:2002-10-01 00:00:00

  • Different trends of transmitted HIV-1 drug resistance in Madrid, Spain, among risk groups in the last decade.

    abstract::The presence of transmitted HIV drug resistance (TDR) threatens the efficacy of antiretroviral treatment. We aimed to assess the changes in TDR prevalence over the last decade in Madrid, Spain, to verify the role of the patients' risk groups in these changes. We analysed the trends of TDR between 2000 and 2011 in a co...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Yebra G,Delgado R,Pulido F,Rubio R,Galán JC,Moreno S,Holguín Á

    更新日期:2014-05-01 00:00:00

  • Evidence of apoptosis induced by viral protein 2 of chicken anaemia virus.

    abstract::Although viral protein 3 (VP3) of chicken anaemia virus (CAV) has been well recognised as an inducer of apoptosis, viral protein 2 (VP2) of the virus has only been speculated to have apoptotic activity. This has not been verified because the open reading frame (ORF) encoding VP2 completely encompasses that encoding VP...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Kaffashi A,Pagel CN,Noormohammadi AH,Browning GF

    更新日期:2015-10-01 00:00:00

  • Passive immunization of mice with monoclonal antibodies raised against tick-borne encephalitis virus. Brief report.

    abstract::Adult Balb/c mice were passively immunized with monoclonal antibodies (100 micrograms/mouse) raised against tick-borne encephalitis (TBE) virus then challenged 24 hours later s.c. with 10 LD50 of TBE virus (Nëudorfl isolate). None of the mice showed evidence of premature death although all except one of the monoclonal...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Phillpotts RJ,Stephenson JR,Porterfield JS

    更新日期:1987-01-01 00:00:00

  • Epidemical features of HAdV-3 and HAdV-7 in pediatric pneumonia in Chongqing, China.

    abstract::Human adenoviruses (HAdV) of species B, C, and E (HAdV-B, -C, -E) are frequent causative agents of acute respiratory infections worldwide. No specific analysis has been done on the epidemiological and clinical features of HAdV in pediatric pneumonia in China. Nasopharyngeal aspirates were collected from hospitalized c...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Wo Y,Lu QB,Huang DD,Li XK,Guo CT,Wang HY,Zhang XA,Liu W,Cao WC

    更新日期:2015-03-01 00:00:00

  • Sequence analysis of genome segments S4 and S8 of Mal de Río Cuarto virus (MRCV): evidence that the virus should be a separate Fijivirus species.

    abstract::This is the first sequence-based characterization of Mal de Río Cuarto virus (MRCV), currently classified as a variant of Maize rough dwarf virus (MRDV) and exclusively found in South America. We sequenced and analyzed genome segments S4 and S8. MRCV S4 coded for a putative 131.67 kDa protein while MRCV S8 coded for a...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Distéfano AJ,Conci LR,Muñoz Hidalgo M,Guzmán FA,Hopp HE,del Vas M

    更新日期:2002-09-01 00:00:00

  • Identification of two nucleotide sequence sub-groups within Potato mop-top virus.

    abstract::To evaluate the variation of Potato mop-top pomovirus from potato fields, 21 isolates were collected from different Danish locations. Reverse transcription-polymerase chain reaction-restriction fragment length polymorphism (RT-PCR-RFLP) of regions of RNA2 was performed for all 21 isolates resulting in the establishmen...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Nielsen SL,Nicolaisen M

    更新日期:2003-02-01 00:00:00

  • Analysis of the preS1 gene of hepatitis B virus (HBV) to define epidemiologically linked and un-linked infections in South Africa.

    abstract::Analysis of the preS1 gene of hepatitis B virus was used to define two nosocomial outbreaks of HBV infection. In an outbreak in an oncology unit we had previously shown by single stranded conformational polymorphism (SSCP) analysis of a 189 bp fragment of the preS1 gene, that 52 children were infected with HBV strains...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Hardie DR,Williamson C

    更新日期:1997-01-01 00:00:00

  • Abortive rabies in rabbits and white rats infected intracerebrally.

    abstract::Non-fatal rabies was successfully reproduced in rabbits infected intracerebrally with a highly pathogenic strain of street virus isolated from a man who had died of hydrophobia abter a dog bite and in white rats infected intracerebrally with the CVS strain of fixed virus. All the animals were pretreated with a subleth...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Gribencha SV

    更新日期:1975-01-01 00:00:00

  • Analysis of the complete genome sequence of euphorbia ringspot virus, an atypical member of the genus Potyvirus.

    abstract::The complete genome sequence of an isolate of euphorbia ringspot virus (EuRSV) was determined by deep sequencing and rapid amplification of cDNA ends (RACE) RT-PCR. It has an RNA genome of 10,154 nucleotides in size, excluding the poly(A) tail, and encodes a polyprotein of 3265 amino acids. Phylogenetic analysis from ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Knierim D,Menzel W,Winter S

    更新日期:2017-01-01 00:00:00

  • Genome characterization of novel lytic Myoviridae bacteriophage ϕVP-1 enhances its applicability against MDR-biofilm-forming Vibrio parahaemolyticus.

    abstract::A pathogen of significance in the aquaculture sector, the Gram-negative marine bacterium Vibrio parahaemolyticus causes gastroenteritis associated with consumption of improperly prepared seafood. This bacterium can be controlled using lytic bacteriophages as an alternative to antibiotics. ϕVP-1 is a lytic phage of V. ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Matamp N,Bhat SG

    更新日期:2020-02-01 00:00:00

  • Sequence analysis of minute amounts of viroid RNA using the polymerase chain reaction (PCR). Rapid communication.

    abstract::The amount of viroid RNA required for sequence analysis can be reduced by five to six orders of magnitude when a modified "polymerase chain reaction" (PCR) is used for the amplification of the reversely transcribed, overlapping viroid cDNAs. By applying this procedure it is possible to establish the molecular structur...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Puchta H,Sänger HL

    更新日期:1989-01-01 00:00:00

  • Integration of bovine leukaemia virus at all stages of enzootic bovine leukosis.

    abstract::Integration of bovine leukaemia virus DNA was investigated at all stages of infection in cattle. We report here the detection of integrated proviral DNA in the majority of antibody positive animals without lymphocytosis. In all but one case virus was integrated at a number of different sites. Hybridization analysis fa...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Coulston J,Daniel RC,Lavin MF

    更新日期:1991-01-01 00:00:00

  • The first complete genome sequence of narcissus latent virus from Narcissus.

    abstract::The complete sequence of a narcissus virus isolated from the Netherlands (Narv-NL) was determined to be 8172 nucleotides in length with an open reading frame encoding for 2624 amino acids. Phylogenetic analysis indicates that Narv-NL is clustered with high confidence among representative members from the genus Maclura...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Gao F,Shen J,Liao F,Cai W,Lin S,Yang H,Chen S

    更新日期:2018-05-01 00:00:00

  • Complete genome sequence of Buttiauxella phage vB_ButM_GuL6.

    abstract::We present here the results of the analysis of the complete genome sequence of a lytic bacteriophage, vB_ButM_GuL6, which is the first virus isolated from Buttiauxella. Electron microscopy revealed that vB_ButM_GuL6 belongs to the family Myoviridae, order Caudovirales. The genome of vB_ButM_GuL6 is a linear, circularl...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Noreika A,Meškys R,Lazutka J,Kaliniene L

    更新日期:2020-11-01 00:00:00

  • Molecular characterization of a new potyvirus infecting passion fruit.

    abstract::A potyvirus (isolate PFV-FJ) infecting passion fruit in China was identified by small-RNA sequencing. The complete genome sequence of PFV-FJ was determined to be 9974 nucleotides, excluding the poly(A) tail. PFV-FJ shares 70-72% nucleotide and 69-74% amino acid sequence identity at the polyprotein level with seven rep...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Xie L,Gao F,Zheng S,Zhang X,Zhang L,Li T

    更新日期:2019-07-01 00:00:00

  • Isolation of a recombinant influenza virus (Hsw 1 N2) from swine in Japan.

    abstract::Outbreaks of swine influenza were first observed in Japan in 1978. A number of influenza viruses were isolated from diseased swine. Almost all viruses isolated were swine influenza virus (Hsw 1 N1) but two viruses isolated from the nasal swabs of swine showing clinical signs of influenza in the Kanagawa prefecture wer...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Sugimura T,Yonemochi H,Ogawa T,Tanaka Y,Kumagai T

    更新日期:1980-01-01 00:00:00

  • Poliovirus modulates Bcl-xl expression in the human U937 promonocytic cell line.

    abstract::Poliovirus induces bcl-2-independent apoptosis in the human U937 promonocytic cell line [28]. Here we describe that this cell death, induced after viral infection, correlates with the modulation of the protooncoprotein Bcl-xl. Furthermore, poliovirus infection decreases the detected Bcl-xl in a U937 clone that overexp...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Calandria C,López-Guerrero JA

    更新日期:2002-12-01 00:00:00

  • Combinatory effects of vaccinia virus VG9 and the STAT3 inhibitor Stattic on cancer therapy.

    abstract::The recombinant vaccinia virus VG9 and the STAT3 inhibitor Stattic were combined to kill cancer cells via both oncolytic activity and inhibition of STAT3 phosphorylation in cells. The combinatory anti-tumour activity of these compounds was superior to the activity of VG9 or Stattic alone in vivo. The inhibition of tum...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Yang R,Wang L,Sheng J,Huang Q,Pan D,Xu Y,Yan J,Wang X,Dong Z,Yang M

    更新日期:2019-07-01 00:00:00

  • Abrupt emergence and predominance in Vietnam of rotavirus A strains possessing a bovine-like G8 on a DS-1-like background.

    abstract::An apparently single rotavirus A strain possessing a genotype constellation of G8-P[8]-I2-R2-C2-M2-A2-N2-T2-E2-H2 abruptly emerged, caused diarrhoea in children requiring hospitalisation, and increased to reach 27 % of strains detected during the first half of 2015 in Vietnam. ...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Hoa-Tran TN,Nakagomi T,Vu HM,Do LP,Gauchan P,Agbemabiese CA,Nguyen TT,Nakagomi O,Thanh NT

    更新日期:2016-02-01 00:00:00

  • Nucleotide sequence comparisons between several strains and isolates of human cytomegalovirus reveal alternate start codon usage.

    abstract::Mutations abound in all viral populations, which are thus rendered adaptable to changes in environmental conditions. Human cytomegalovirus (HCMV) is an important human pathogen for investigating nucleotide sequence variations because they can affect its potential to cause disease. We have determined part of the nucleo...

    journal_title:Archives of virology

    pub_type: 杂志文章


    authors: Brondke H,Schmitz B,Doerfler W

    更新日期:2007-01-01 00:00:00