Next-generation sequencing of a human-animal reassortant G6P[14] rotavirus A strain from a child hospitalized with diarrhoea.

Abstract:

:We previously reported the VP4 and the VP7 genotypes of the first G6P[14] rotavirus strain (RVA/Human-wt/GHA/M0084/2010/G6P[14]) from the stool of an infant with diarrhoea in Ghana. In the current study, we obtained the complete genome sequences using Illumina MiSeq next-generation sequencing to enable us to determine the host species origin of the genes by phylogenetic analysis. The genotype constellation was G6-P[14]-I2-R2-C2-M2-A11-N2-T6-E2-H3. Phylogenetic analysis showed that M0084 was a reassortant strain from RVAs of both artiodactyl and human host species origin. The level of sequence identity of the individual genes of M0084 to other sequences in the GenBank ranged from 95.2 to 99.5%; however, there was no single strain from the GenBank database with a complete genome sequence that was highly similar to that of M0084. To help trace the source of such unique gene pools being introduced into human RVAs, it will be useful to examine RVA sequences from potential reservoirs such as sheep and goats, which are common domestic animals in this locality.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Damanka SA,Dennis FE,Lartey BL,Nyarko KM,Agbemabiese CA,Armah GE

doi

10.1007/s00705-020-04543-4

subject

Has Abstract

pub_date

2020-04-01 00:00:00

pages

1003-1005

issue

4

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-020-04543-4

journal_volume

165

pub_type

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