Abstract：
:Sorghum is one of the world's major crops, expresses traits for resilience to climate change, and can be used for several purposes including food and clean fuels. Multiple-trait genomic prediction and selection models were implemented using genotyping-by-sequencing single nucleotide polymorphism markers and phenotypic data information. We demonstrated for the first time the efficiency genomic selection modelling of index selection including biofuel traits such as aboveground biomass yield, plant height, and dry mass fraction of the fresh material. This work also sheds light, for the first time, on the promising potential of using the information from the populations grown from seed to predict the performance of the populations regrown from the rhizomes-even two winter seasons after the original trial was sown. Genomic selection modelling of the optimum index selection including the three traits of interest (plant height, aboveground dry biomass yield, and dry mass fraction of fresh mass material) was the most promising. Since the plant characteristics evaluated herein are routinely measured in cereal and other plant species of agricultural interest, it can be inferred that the findings can be transferred in other major crops.
journal_name
Genes (Basel)journal_title
Genesauthors
Habyarimana E,Lopez-Cruz M,Baloch FSdoi
10.3390/genes11010061subject
Has Abstractpub_date
2020-01-05 00:00:00issue
1issn
2073-4425pii
genes11010061journal_volume
11pub_type
杂志文章相关文献
Genes文献大全abstract：:Background: The C34T polymorphism (rs 17602729) in adenosine monophosphate deaminase 1 gene (AMPD1) is associated with muscular energy metabolism in exercise. However, the role of its potential modifying impact on exercise-induced changes in obesity related parameters is unknown. The aim of the study was to determine ...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11050558
更新日期：2020-05-16 00:00:00
abstract：:Root nodule symbioses (nodulation) and whole genome duplication (WGD, polyploidy) are both important phenomena in the legume family (Leguminosae). Recently, it has been proposed that polyploidy may have played a critical role in the origin or refinement of nodulation. However, while nodulation and polyploidy have been...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes8120357
更新日期：2017-11-30 00:00:00
abstract：:Neural stem cells (NSCs) are capable of producing a variety of neural cell types, and are indispensable for the development of the mammalian brain. NSCs can be induced in vitro from pluripotent stem cells, including embryonic stem cells and induced-pluripotent stem cells. Although the transplantation of these exogenou...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes2010107
更新日期：2011-01-14 00:00:00
abstract：:Transcriptional regulation of the genome arguably provides the basis for the anatomical elaboration and dynamic operation of the human brain. It logically follows that genetic variations affecting gene transcription contribute to mental health disorders, including autism spectrum disorder (ASD). A number of recent stu...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11050535
更新日期：2020-05-11 00:00:00
abstract：:This article explores the mechanism of miR-194 on the proliferation and apoptosis of Aβ1-42-transduced hippocampal neurons. Aβ1-42-transduced hippocampal neuron model was established by inducing hippocampal neurons with Aβ1-42. MTT assay and flow cytometry were used to detect the viability and apoptosis of hippocampal...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes10040313
更新日期：2019-04-21 00:00:00
abstract：:Transfer RNAs (tRNAs) are essential adaptors that mediate translation of the genetic code. These molecules undergo a variety of post-transcriptional modifications, which expand their chemical reactivity while influencing their structure, stability, and functionality. Chemical modifications to tRNA ensure translational...
journal_title：Genes
pub_type： 杂志文章,评审
doi：10.3390/genes11080907
更新日期：2020-08-07 00:00:00
abstract：:Telomere maintenance mechanisms (TMM) are used by cancer cells to avoid apoptosis, 85-90% reactivate telomerase, while 10-15% use the alternative lengthening of telomeres (ALT). Due to anti-telomerase-based treatments, some tumors switch from a telomerase-dependent mechanism to ALT; in fact, the co-existence between b...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11070834
更新日期：2020-07-21 00:00:00
abstract：:Single-cell RNA-seq (scRNA-seq) is quite prevalent in studying transcriptomes, but it suffers from excessive zeros, some of which are true, but others are false. False zeros, which can be seen as missing data, obstruct the downstream analysis of single-cell RNA-seq data. How to distinguish true zeros from false ones i...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11050532
更新日期：2020-05-11 00:00:00
abstract：:Wnt is a complex signaling pathway involved in the regulation of crucial biological functions such as development, proliferation, differentiation and migration of cells, mainly stem cells, which are virtually present in all embryonic and adult tissues. Conversely, dysregulation of Wnt signal is implicated in developme...
journal_title：Genes
pub_type： 杂志文章,评审
doi：10.3390/genes9020105
更新日期：2018-02-17 00:00:00
abstract：:Pleurotus tuoliensis (Pt) and P. eryngii var. eryngii (Pe) are important edible mushrooms. The epigenetic and gene expression signatures characterizing major developmental transitions in these two mushrooms remain largely unknown. Here, we report global analyses of DNA methylation and gene expression in both mushrooms...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes10060465
更新日期：2019-06-17 00:00:00
abstract：:Anti-Müllerian hormone (AMH) is a reliable and easily detectable reproductive marker for the fertility competence of many farm animal species. AMH is also a good predictor of superovulation in cattle, sheep, and mares. In this review, we have summarized the recent findings related to AMH and its predictive reliability...
journal_title：Genes
pub_type： 杂志文章,评审
doi：10.3390/genes10121009
更新日期：2019-12-04 00:00:00
abstract：:Lactobacillus ruminis is a commensal motile lactic acid bacterium living in the intestinal tract of humans and animals. Although a few genomes of L. ruminis were published, most of them were animal derived. To explore the genetic diversity and potential niche-specific adaptation changes of L. ruminis, in the current w...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11010070
更新日期：2020-01-08 00:00:00
abstract：:Prader-Willi syndrome (PWS) is a complex multisystemic condition caused by a lack of paternal expression of imprinted genes from the 15q11.2-q13 region. Limited literature exists on the association between molecular classes, growth hormone use, and the prevalence of psychiatric phenotypes in PWS. In this study, we ana...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11111250
更新日期：2020-10-23 00:00:00
abstract：:Shiga toxin-producing Escherichia coli (STEC) are foodborne pathogens associated with outbreaks and hemolytic-uremic syndrome. Cattle and meat foods are the main reservoir and infection source, respectively. Pathogenicity islands (PAIs) play an important role in STEC pathogenicity, and non-locus of the enterocyte effa...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes9020081
更新日期：2018-02-10 00:00:00
abstract：:Transfer RNAs (tRNAs) are abundant small non-coding RNAs that are crucially important for decoding genetic information. Besides fulfilling canonical roles as adaptor molecules during protein synthesis, tRNAs are also the source of a heterogeneous class of small RNAs, tRNA-derived small RNAs (tsRNAs). Occurrence and th...
journal_title：Genes
pub_type： 杂志文章,评审
doi：10.3390/genes9120607
更新日期：2018-12-05 00:00:00
abstract：:The Muraenidae is one of the largest and most complex anguilliform families. Despite their abundance and important ecological roles, morays are little studied, especially cytogenetically, and both their phylogenetic relationships and the taxonomy of their genera are controversial. With the aim of extending the karyolo...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11111319
更新日期：2020-11-06 00:00:00
abstract：:Mitochondrial dynamics are known to have an important role in so-called age-related diseases, including cancer. Mitochondria is an organelle involved in many key cellular functions and responds to physiologic or stress stimuli by adapting its structure and function. Perhaps the most important structural changes involv...
journal_title：Genes
pub_type： 杂志文章,评审
doi：10.3390/genes9020115
更新日期：2018-02-21 00:00:00
abstract：:White Spot Syndrome Virus (WSSV) is one of the main threats to farming Litopenaeus vannamei, the most important crustacean commercialized in aquaculture worldwide. Here, we performed RNA-seq analyses in hepatopancreas and muscle from WSSV-negative (healthy) and WSSV-positive (unhealthy) L. vannamei, previously exposed...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11070805
更新日期：2020-07-16 00:00:00
abstract：:The anaerobic degradation of benzoate in bacteria involves the benzoyl-CoA central pathway. Azoarcus/Aromatoleum strains are a major group of anaerobic benzoate degraders, and the transcriptional regulation of the bzd genes was extensively studied in Azoarcus sp. CIB. In this work, we show that the bzdR regulatory gen...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes10070489
更新日期：2019-06-27 00:00:00
abstract：:A major technological shift in the research community in the past decade has been the adoption of high throughput (HT) technologies to interrogate the genome, epigenome, transcriptome, and proteome in a massively parallel fashion [...]. ...
journal_title：Genes
pub_type： 社论
doi：10.3390/genes11030245
更新日期：2020-02-26 00:00:00
abstract：:Several transcription factors (TFs) coordinate to regulate expression of specific genes at the transcriptional level. In Arabidopsis thaliana it is estimated that approximately 10% of all genes encode TFs or TF-like proteins. It is important to identify target genes that are directly regulated by TFs in order to under...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes5041115
更新日期：2014-12-19 00:00:00
abstract：:Maize kernel development is a complex biological process that involves the temporal and spatial expression of many genes and fine gene regulation at a transcriptional and post-transcriptional level, and microRNAs (miRNAs) play vital roles during this process. To gain insight into miRNA-mediated regulation of maize ker...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes8120385
更新日期：2017-12-14 00:00:00
abstract：:The homeodomain-leucine zipper (HD-Zip) gene family, as plant-specific transcription factors, plays an important role in plant development and growth as well as in the response to diverse stresses. Although HD-Zip genes have been extensively studied in many plants, they had not yet been studied in wheat, especially th...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes9020070
更新日期：2018-02-01 00:00:00
abstract：:White mold (WM) is a devastating fungal disease affecting common bean (Phaseolus vulgaris L.). In this research, a genome-wide association study (GWAS) for WM resistance was conducted using 294 lines of the Spanish diversity panel. One single-locus method and six multi-locus methods were used in the GWAS. Response to ...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11121496
更新日期：2020-12-12 00:00:00
abstract：:Functional and folding constraints impose interdependence between interacting sites along the protein chain that are envisaged through protein sequence evolution. Studying the influence of structure in phylogenetic models requires detailed and reliable structural models. Polysaccharide deacetylases (PDAs), members of ...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes9080386
更新日期：2018-07-31 00:00:00
abstract：:Bupleurum falcatum, which belongs to the family Apiaceae, has long been applied for curative treatments, especially as a liver tonic, in herbal medicine. The chloroplast (cp) genome has been an ideal model to perform the evolutionary and comparative studies because of its highly conserved features and simple structure...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes7050020
更新日期：2016-05-13 00:00:00
abstract：:Almost all eukaryotes have transposable elements (TEs) against which they have developed defense mechanisms. In the Drosophila germline, the main transposable element (TE) regulation pathway is mediated by specific Piwi-interacting small RNAs (piRNAs). Nonetheless, for unknown reasons, TEs sometimes escape cellular co...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11020215
更新日期：2020-02-19 00:00:00
abstract：:During speciation-with-gene-flow, a transition from single-locus to multi-locus processes can occur, as strong coupling of multiple loci creates a barrier to gene flow. Testing predictions about such transitions with empirical data requires building upon past theoretical work and the continued development of quantitat...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes9060274
更新日期：2018-05-24 00:00:00
abstract：:Multidrug-resistant (MDR; resistance to >3 antimicrobial classes) Salmonella enterica serovar I 4,[5],12:i:- strains were linked to a 2015 foodborne outbreak from pork. Strain USDA15WA-1, associated with the outbreak, harbors an MDR module and the metal tolerance element Salmonella Genomic Island 4 (SGI-4). Characteri...
journal_title：Genes
pub_type： 杂志文章
doi：10.3390/genes11111291
更新日期：2020-10-30 00:00:00
abstract：:Living organisms are usually exposed to various DNA damaging agents so the mechanisms to detect and repair diverse DNA lesions have developed in all organisms with the result of maintaining genome integrity. Defects in DNA repair machinery contribute to cancer, certain diseases, and aging. Therefore, conserving the ge...
journal_title：Genes
pub_type： 杂志文章,评审
doi：10.3390/genes8110299
更新日期：2017-10-30 00:00:00
