Genetic structure of Australian glass shrimp, Paratya australiensis, in relation to altitude.

Abstract:

:Paratya australiensis Kemp (Decapoda: Atyidae) is a widely distributed freshwater shrimp in eastern Australia. The species has been considered as an important stream organism for studying genetics, dispersal, biology, behaviour and evolution in atyids and is a major food source for stream dwelling fishes. Paratya australiensis is a cryptic species complex consisting of nine highly divergent mitochondrial DNA lineages. Previous studies in southeast Queensland showed that "lineage 4" favours upstream sites at higher altitudes, with cooler water temperatures. This study aims to identify putative selection and population structure between high elevation and low elevation populations of this lineage at relatively small spatial scales. Sample localities were selected from three streams: Booloumba Creek, Broken Bridge Creek and Obi Obi Creek in the Conondale Range, southeast Queensland. Six sample localities, consisting of 142 individuals in total were sequenced using double digest Restriction Site Associated DNA-sequencing (ddRAD-seq) technique. Among the 142 individuals, 131 individuals shared 213 loci. Outlier analysis on 213 loci showed that 27 loci were putatively under selection between high elevation and low elevation populations. Outlier analysis on individual streams was also done to test for parallel patterns of adaptation, but there was no evidence of a parallel pattern. Population structure was observed using both the 27 outliers and 186 neutral loci and revealed similar population structure in both cases. Therefore, we cannot differentiate between selection and drift here. The highest genetic differentiation was observed between high elevation and low elevation populations of Booloumba Creek, with small levels of differentiation in the other two streams.

journal_name

PeerJ

journal_title

PeerJ

authors

Rahman S,Schmidt D,Hughes JM

doi

10.7717/peerj.8139

subject

Has Abstract

pub_date

2020-01-09 00:00:00

pages

e8139

issn

2167-8359

pii

8139

journal_volume

8

pub_type

杂志文章

相关文献

PeerJ文献大全
  • Characteristics and outcomes of hemodialysis patients with COVID-19: a retrospective single center study.

    abstract:Background:The coronavirus 19 (COVID-19) pandemic has heightened the threat to the health and lives of patients with comorbid diseases. Infection by COVID-19 is especially detrimental to patients on hemodialysis. In this study, we evaluated the clinical characteristics, laboratory findings, treatments and prognoses of ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10459

    authors: Luo Y,Li J,Liu Z,Yu H,Peng X,Cao C

    更新日期:2020-11-26 00:00:00

  • Mesoscale spatiotemporal variability in a complex host-parasite system influenced by intermediate host body size.

    abstract:BACKGROUND:Parasites are essential components of natural communities, but the factors that generate skewed distributions of parasite occurrences and abundances across host populations are not well understood. METHODS:Here, we analyse at a seascape scale the spatiotemporal relationships of parasite exposure and host bo...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3675

    authors: Rodríguez SM,Valdivia N

    更新日期:2017-08-17 00:00:00

  • Effect of orienteering experience on walking and running in the absence of vision and hearing.

    abstract:Purpose:This study aimed to examine differences between track and field (T&F) runners and foot-orienteers (Foot-O) in the walking and running tests in the absence of vision and hearing. We attempted to determine whether experienced foot orienteers show better ability to maintain the indicated direction compared to trac...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7736

    authors: Machowska W,Cych P,Siemieński A,Migasiewicz J

    更新日期:2019-09-26 00:00:00

  • Population structure of Bathymodiolus manusensis, a deep-sea hydrothermal vent-dependent mussel from Manus Basin, Papua New Guinea.

    abstract::Deep-sea hydrothermal vents in the western Pacific are increasingly being assessed for their potential mineral wealth. To anticipate the potential impacts on biodiversity and connectivity among populations at these vents, environmental baselines need to be established. Bathymodiolus manusensis is a deep-sea mussel fou...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3655

    authors: Thaler AD,Saleu W,Carlsson J,Schultz TF,Van Dover CL

    更新日期:2017-08-21 00:00:00

  • Soymilk residue (okara) as a natural immobilization carrier for Lactobacillus plantarum cells enhances soymilk fermentation, glucosidic isoflavone bioconversion, and cell survival under simulated gastric and intestinal conditions.

    abstract::Cell immobilization is an alternative to microencapsulation for the maintenance of cells in a liquid medium. However, artificial immobilization carriers are expensive and pose a high safety risk. Okara, a food-grade byproduct from soymilk production, is rich in prebiotics. Lactobacilli could provide health enhancing e...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2701

    authors: Xiudong X,Ying W,Xiaoli L,Ying L,Jianzhong Z

    更新日期:2016-11-10 00:00:00

  • Bayesian estimation of diagnostic accuracy of fecal culture and PCR-based tests for the detection of Salmonella enterica in California cull dairy cattle.

    abstract::Epidemiological studies of low prevalence disease problems are often hindered by the high cost of diagnostic testing. The objective of this study was to evaluate PCR screening of both individual and pooled fecal samples from culled dairy cows for the invA gene of Salmonella followed by culture to determine if the sens...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8310

    authors: Adaska JM,Ekong PS,Clothier KA,Williams DR,Rossitto PV,Lehenbauer TW,Atwill ER,Li X,Aly SS

    更新日期:2020-01-15 00:00:00

  • Effects of various factors on Doppler flow ultrasonic radial and coccygeal artery systolic blood pressure measurements in privately-owned, conscious dogs.

    abstract:OBJECTIVE:The purpose of this study was to assess the effects of age, body condition score (BCS) and muscle condition score (MCS) on indirect radial and coccygeal Doppler systolic arterial blood pressure (SAP) measurements in dogs. METHODS:Sixty-two privately-owned dogs were enrolled between June and July 2016. The BC...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.3101

    authors: Mooney AP,Mawby DI,Price JM,Whittemore JC

    更新日期:2017-03-22 00:00:00

  • Baseline seabed habitat and biotope mapping for a proposed marine reserve.

    abstract::Seabed mapping can quantify the extent of benthic habitats that comprise marine ecosystems, and assess the impact of fisheries on an ecosystem. In this study, the distribution of seabed habitats in a proposed no-take Marine Reserve along the northeast coast of Great Barrier Island, New Zealand, was mapped using underw...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1446

    authors: Lee ST,Kelly M,Langlois TJ,Costello MJ

    更新日期:2015-12-10 00:00:00

  • The combined effects of light intensity, temperature, and water potential on wall deposition in regulating hypocotyl elongation of Brassica rapa.

    abstract::Hypocotyl elongation is a critical sign of seed germination and seedling growth, and it is regulated by multi-environmental factors. Light, temperature, and water potential are the major environmental stimuli, and their regulatory mechanism on hypocotyl growth has been extensively studied at molecular level. However, ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9106

    authors: Wang H,Shang Q

    更新日期:2020-05-26 00:00:00

  • Loss anticipation and outcome during the Monetary Incentive Delay Task: a neuroimaging systematic review and meta-analysis.

    abstract:Background:Reward seeking and avoidance of punishment are key motivational processes. Brain-imaging studies often use the Monetary Incentive Delay Task (MIDT) to evaluate motivational processes involved in maladaptive behavior. Although the bulk of research has been done on the MIDT reward events, little is known about...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4749

    authors: Dugré JR,Dumais A,Bitar N,Potvin S

    更新日期:2018-05-10 00:00:00

  • Fluctuation and diversity of Hydromedusae (Hydrozoa, Cnidaria) in a highly productive region of the Gulf of Mexico inferred from high frequency plankton sampling.

    abstract::Hydrozoa medusae undergo blooms and seasonal fluctuations; however the drivers of such fluctuations are unknown. To understand how medusa populations fluctuate in response to seasonal factors such as temperature, salinity, dissolved oxygen, and chlorophyll a, and to enhance our taxonomic knowledge of Hydrozoa in Galve...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7848

    authors: Pruski S,Miglietta MP

    更新日期:2019-10-08 00:00:00

  • Diminishing returns as a function of disturbance.

    abstract::According to Spearman's law of diminishing returns (SLODR), IQ test scores are more g saturated among those with low, compared to those with high, ability. The present simulation shows that such difference in saturation can be observed if test scores are affected by a disturbing factor, for example, low motivation, il...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9490

    authors: Sorjonen K,Melin B

    更新日期:2020-07-03 00:00:00

  • Genome-wide analysis of PRR gene family uncovers their roles in circadian rhythmic changes and response to drought stress in Gossypium hirsutum L.

    abstract:Background:The circadian clock not only participates in regulating various stages of plant growth, development and metabolism, but confers plant environmental adaptability to stress such as drought. Pseudo-Response Regulators (PRRs) are important component of the central oscillator (the core of circadian clock) and pla...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.9936

    authors: Wang J,Du Z,Huo X,Zhou J,Chen Y,Zhang J,Pan A,Wang X,Wang F,Zhang J

    更新日期:2020-09-25 00:00:00

  • BioWorkbench: a high-performance framework for managing and analyzing bioinformatics experiments.

    abstract::Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require high-performance computing techniques and can benefit from specialized technologies such ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5551

    authors: Mondelli ML,Magalhães T,Loss G,Wilde M,Foster I,Mattoso M,Katz D,Barbosa H,de Vasconcelos ATR,Ocaña K,Gadelha LMR Jr

    更新日期:2018-08-29 00:00:00

  • Causes of mortality across different immigrant groups in Northeastern Italy.

    abstract::Background. Despite massive immigration towards Southern Europe in the last two decades, data on mortality by cause among immigrants in Italy are scarce. The aim of this study was to investigate mortality from all and from specific causes of death among immigrants residing in the Veneto Region (Northeastern Italy). Me...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.975

    authors: Fedeli U,Ferroni E,Pigato M,Avossa F,Saugo M

    更新日期:2015-05-21 00:00:00

  • Changes in sprint performance and sagittal plane kinematics after heavy resisted sprint training in professional soccer players.

    abstract:Background:Sprint performance is an essential skill to target within soccer, which can be likely achieved with a variety of methods, including different on-field training options. One such method could be heavy resisted sprint training. However, the effects of such overload on sprint performance and the related kinetic...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.10507

    authors: Lahti J,Huuhka T,Romero V,Bezodis I,Morin JB,Häkkinen K

    更新日期:2020-12-15 00:00:00

  • Impacts of diarrhea on the immune system, intestinal environment, and expression of PGRPs in New Zealand rabbits.

    abstract::Diarrhea is a syndrome of digestive disorders in young rabbits and may lead to secondary infections resulting in reduced immunity and higher mortality in baby rabbits, with serious impacts on rabbit farming. In this study, we investigated the effects of diarrhea on the health of baby rabbits in terms of intestinal muc...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.4100

    authors: Chen Y,Zhao B,Wu Y,Hu S,Mu L,Zhu C,Pan Y,Wu X

    更新日期:2017-11-27 00:00:00

  • Sponge exhalent seawater contains a unique chemical profile of dissolved organic matter.

    abstract::Sponges are efficient filter feeders, removing significant portions of particulate and dissolved organic matter (POM, DOM) from the water column. While the assimilation and respiration of POM and DOM by sponges and their abundant microbial symbiont communities have received much attention, there is virtually no inform...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2870

    authors: Fiore CL,Freeman CJ,Kujawinski EB

    更新日期:2017-01-11 00:00:00

  • Identification of prognostic splicing factors and exploration of their potential regulatory mechanisms in pancreatic adenocarcinoma.

    abstract::Pancreatic adenocarcinoma (PAAD), the most common subtype of pancreatic cancer, is a highly lethal disease. In this study, we integrated the expression profiles of splicing factors (SFs) of PAAD from RNA-sequencing data to provide a comprehensive view of the clinical significance of SFs. A prognostic index (PI) based ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8380

    authors: Rong MH,Zhu ZH,Guan Y,Li MW,Zheng JS,Huang YQ,Wei DM,Li YM,Wu XJ,Bu HP,Peng HL,Wei XL,Li GS,Li MX,Chen MH,Huang SN

    更新日期:2020-02-11 00:00:00

  • Effect of acute eye fatigue on cognition for young females: a pilot study.

    abstract::The number of people suffering from eye fatigue induced by visual display terminal (VDT) viewing is expected to increase in the modern world. Eye dysfunction is suggested to induce a decrease in cognitive function, at least in the long term. Furthermore, considering other previous findings, it may be reasonable to thi...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7978

    authors: Akagi R,Tonotsuka M,Horie R,Hirata K,Ando S

    更新日期:2019-10-29 00:00:00

  • An investigation of the genus Mesacanthus (Chordata: Acanthodii) from the Orcadian Basin and Midland Valley areas of Northern and Central Scotland using traditional morphometrics.

    abstract::Mesacanthus is a common and speciose genus of acanthodian fish from Lower Old Red Sandstone and Middle Old Red Sandstone assemblages (representing the Lower Devonian and Middle Devonian respectively) and is well represented in many palaeoichthyology collections in the UK. Based upon descriptions given during the 19th ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1331

    authors: Baron MG

    更新日期:2015-10-29 00:00:00

  • Cell-wall-degrading enzymes produced in vitro and in vivo by Rhizoctonia solani, the causative fungus of peanut sheath blight.

    abstract::Rhizoctonia solani causes the disease peanut sheath blight, involving symptoms of maceration and necrosis of infected tissue, mainly caused by cell-wall-degrading enzymes (CWDEs). This study investigated the production of CWDEs including polygalacturonase (PG), polymethyl-galacturonase (PMG), cellulase (Cx) and β-gluc...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.5580

    authors: Xue CY,Zhou RJ,Li YJ,Xiao D,Fu JF

    更新日期:2018-09-05 00:00:00

  • miR-27b attenuates apoptosis induced by transmissible gastroenteritis virus (TGEV) infection via targeting runt-related transcription factor 1 (RUNX1).

    abstract::Transmissible gastroenteritis virus (TGEV), belonging to the coronaviridae family, is the key cause of the fatal diarrhea of piglets and results in many pathological processes. microRNAs (miRNAs) play a key role in the regulation of virus-induced apoptosis. During the process of apoptosis induced by TGEV infection in ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.1635

    authors: Zhao X,Song X,Bai X,Fei N,Huang Y,Zhao Z,Du Q,Zhang H,Zhang L,Tong D

    更新日期:2016-02-04 00:00:00

  • Enforced symmetry: the necessity of symmetric waxing and waning.

    abstract::A fundamental question in ecology is how the success of a taxon changes through time and what drives this change. This question is commonly approached using trajectories averaged over a group of taxa. Using results from probability theory, we show analytically and using examples that averaged trajectories will be more...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8011

    authors: Hohmann N,Jarochowska E

    更新日期:2019-11-06 00:00:00

  • Osteogenic cells form mineralized particles, a few μm in size, in a 3D collagen gel culture.

    abstract::Osteogenic cells form mineralized matrices in vitro, as well as in vivo. The formation and shape of the mineralized matrices are highly regulated by the cells. In vitro formation of mineralized matrices by osteogenic cells can be a model for in vivo osteogenesis. In this study, using a three-dimensional (3D) collagen ...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.7889

    authors: Kihara T,Umezu C,Sawada K,Furutani Y

    更新日期:2019-10-23 00:00:00

  • Dynamic changes in intestinal microbiota in young forest musk deer during weaning.

    abstract::Weaning is an important event for all mammals, including young forest musk deer. However, weaning stress may cause intestinal microbiota-related disorders. Therefore, high-throughput 16S rRNA gene sequencing was applied to study the dynamic changes in intestinal microbiota during pre-weaning (10 days before weaning) a...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.8923

    authors: Li Y,Shi M,Zhang T,Hu X,Zhang B,Xu S,Ding J,Hu D,Liu S

    更新日期:2020-04-13 00:00:00

  • CardioTF, a database of deconstructing transcriptional circuits in the heart system.

    abstract:BACKGROUND:Information on cardiovascular gene transcription is fragmented and far behind the present requirements of the systems biology field. To create a comprehensive source of data for cardiovascular gene regulation and to facilitate a deeper understanding of genomic data, the CardioTF database was constructed. The...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.2339

    authors: Zhen Y

    更新日期:2016-08-23 00:00:00

  • Underwater sound production varies within not between species in sympatric newts.

    abstract::Sound production is a widespread phenomenon among animals. Effective sound use for mate or species recognition requires some acoustic differentiation at an individual or species level. Several species of caudate amphibians produce underwater sounds, but information about intra- and interspecific variation in their aco...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6649

    authors: Hubáček J,Šugerková M,Gvoždík L

    更新日期:2019-03-28 00:00:00

  • Protein signatures using electrostatic molecular surfaces in harmonic space.

    abstract::We developed a novel method based on the Fourier analysis of protein molecular surfaces to speed up the analysis of the vast structural data generated in the post-genomic era. This method computes the power spectrum of surfaces of the molecular electrostatic potential, whose three-dimensional coordinates have been eit...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.185

    authors: Carvalho CS,Vlachakis D,Tsiliki G,Megalooikonomou V,Kossida S

    更新日期:2013-10-22 00:00:00

  • A large cockroach from the mesosaur-bearing Konservat-Lagerstätte (Mangrullo Formation), Late Paleozoic of Uruguay.

    abstract::Barona arcuata, n.gen et n.sp., a left forewing of a relatively large cockroach of the Order Blattaria, is described from mesosaur-bearing lagoonal shales of the Mangrullo Formation (north-eastern Uruguay). While most of the insect remains recovered from the Mangrullo Formation come from sandy limestones, associated t...

    journal_title:PeerJ

    pub_type: 杂志文章

    doi:10.7717/peerj.6289

    authors: Calisto V,Piñeiro G

    更新日期:2019-01-18 00:00:00