Decoding the development of the human hippocampus.

Abstract:

:The hippocampus is an important part of the limbic system in the human brain that has essential roles in spatial navigation and the consolidation of information from short-term memory to long-term memory1,2. Here we use single-cell RNA sequencing and assay for transposase-accessible chromatin using sequencing (ATAC-seq) analysis to illustrate the cell types, cell linage, molecular features and transcriptional regulation of the developing human hippocampus. Using the transcriptomes of 30,416 cells from the human hippocampus at gestational weeks 16-27, we identify 47 cell subtypes and their developmental trajectories. We also identify the migrating paths and cell lineages of PAX6+ and HOPX+ hippocampal progenitors, and regional markers of CA1, CA3 and dentate gyrus neurons. Multiomic data have uncovered transcriptional regulatory networks of the dentate gyrus marker PROX1. We also illustrate spatially specific gene expression in the developing human prefrontal cortex and hippocampus. The molecular features of the human hippocampus at gestational weeks 16-20 are similar to those of the mouse at postnatal days 0-5 and reveal gene expression differences between the two species. Transient expression of the primate-specific gene NBPF1 leads to a marked increase in PROX1+ cells in the mouse hippocampus. These data provides a blueprint for understanding human hippocampal development and a tool for investigating related diseases.

journal_name

Nature

journal_title

Nature

authors

Zhong S,Ding W,Sun L,Lu Y,Dong H,Fan X,Liu Z,Chen R,Zhang S,Ma Q,Tang F,Wu Q,Wang X

doi

10.1038/s41586-019-1917-5

subject

Has Abstract

pub_date

2020-01-01 00:00:00

pages

531-536

issue

7791

eissn

0028-0836

issn

1476-4687

pii

10.1038/s41586-019-1917-5

journal_volume

577

pub_type

杂志文章

相关文献

NATURE文献大全
  • Identification of CMTM6 and CMTM4 as PD-L1 protein regulators.

    abstract::The clinical benefit for patients with diverse types of metastatic cancers that has been observed upon blockade of the interaction between PD-1 and PD-L1 has highlighted the importance of this inhibitory axis in the suppression of tumour-specific T-cell responses. Notwithstanding the key role of PD-L1 expression by ce...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature23669

    authors: Mezzadra R,Sun C,Jae LT,Gomez-Eerland R,de Vries E,Wu W,Logtenberg MEW,Slagter M,Rozeman EA,Hofland I,Broeks A,Horlings HM,Wessels LFA,Blank CU,Xiao Y,Heck AJR,Borst J,Brummelkamp TR,Schumacher TNM

    更新日期:2017-09-07 00:00:00

  • New cell lines from mouse epiblast share defining features with human embryonic stem cells.

    abstract::The application of human embryonic stem (ES) cells in medicine and biology has an inherent reliance on understanding the starting cell population. Human ES cells differ from mouse ES cells and the specific embryonic origin of both cell types is unclear. Previous work suggested that mouse ES cells could only be obtaine...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature05972

    authors: Tesar PJ,Chenoweth JG,Brook FA,Davies TJ,Evans EP,Mack DL,Gardner RL,McKay RD

    更新日期:2007-07-12 00:00:00

  • Ice-binding structure and mechanism of an antifreeze protein from winter flounder.

    abstract::Antifreeze proteins provide fish with protection against the freezing effect of polar environments by binding to ice surfaces and inhibiting growth of ice crystals. We present the X-ray crystal structure at 1.5 A resolution of a lone alpha-helical antifreeze protein from winter flounder, which provides a detailed look...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/375427a0

    authors: Sicheri F,Yang DS

    更新日期:1995-06-01 00:00:00

  • Thermolysis of fluoropolymers as a potential source of halogenated organic acids in the environment.

    abstract::Following the introduction of hydrochlorofluorocarbon (HCFCs) and hydrofluorocarbon (HFCs) gases as replacements for the ozone-destroying chlorofluorocarbons (CFCs), it has been discovered that HCFCs/HFCs can degrade in the atmosphere to produce trifluoroacetic acid, a compound with no known loss mechanisms in the env...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/35085548

    authors: Ellis DA,Mabury SA,Martin JW,Muir DC

    更新日期:2001-07-19 00:00:00

  • Genomic analyses inform on migration events during the peopling of Eurasia.

    abstract::High-coverage whole-genome sequence studies have so far focused on a limited number of geographically restricted populations, or been targeted at specific diseases, such as cancer. Nevertheless, the availability of high-resolution genomic data has led to the development of new methodologies for inferring population hi...

    journal_title:Nature

    pub_type: 历史文章,杂志文章

    doi:10.1038/nature19792

    authors: Pagani L,Lawson DJ,Jagoda E,Mörseburg A,Eriksson A,Mitt M,Clemente F,Hudjashov G,DeGiorgio M,Saag L,Wall JD,Cardona A,Mägi R,Wilson Sayres MA,Kaewert S,Inchley C,Scheib CL,Järve M,Karmin M,Jacobs GS,Antao T,Ilie

    更新日期:2016-10-13 00:00:00

  • Mfsd2a is critical for the formation and function of the blood-brain barrier.

    abstract::The central nervous system (CNS) requires a tightly controlled environment free of toxins and pathogens to provide the proper chemical composition for neural function. This environment is maintained by the 'blood-brain barrier' (BBB), which is composed of blood vessels whose endothelial cells display specialized tight...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature13324

    authors: Ben-Zvi A,Lacoste B,Kur E,Andreone BJ,Mayshar Y,Yan H,Gu C

    更新日期:2014-05-22 00:00:00

  • Decadal slowdown of a land-terminating sector of the Greenland Ice Sheet despite warming.

    abstract::Ice flow along land-terminating margins of the Greenland Ice Sheet (GIS) varies considerably in response to fluctuating inputs of surface meltwater to the bed of the ice sheet. Such inputs lubricate the ice-bed interface, transiently speeding up the flow of ice. Greater melting results in faster ice motion during summ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature15722

    authors: Tedstone AJ,Nienow PW,Gourmelen N,Dehecq A,Goldberg D,Hanna E

    更新日期:2015-10-29 00:00:00

  • Catalytic enantioselective 1,6-conjugate additions of propargyl and allyl groups.

    abstract::Conjugate (or 1,4-) additions of carbanionic species to α,β-unsaturated carbonyl compounds are vital to research in organic and medicinal chemistry, and there are several chiral catalysts that facilitate the catalytic enantioselective additions of nucleophiles to enoates. Nonetheless, catalytic enantioselective 1,6-co...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature19063

    authors: Meng F,Li X,Torker S,Shi Y,Shen X,Hoveyda AH

    更新日期:2016-09-15 00:00:00

  • Facilitated binding of TATA-binding protein to nucleosomal DNA.

    abstract::BINDING of the TATA-binding protein (TBP) to the TATA box is required for transcription from many eukaryotic promoters in gene expression. Regulation of this binding is therefore likely to be an important determinant of promoter activity. Incorporation of the TATA sequence into nucleosomes dramatically reduces transcr...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/370481a0

    authors: Imbalzano AN,Kwon H,Green MR,Kingston RE

    更新日期:1994-08-11 00:00:00

  • Three classical Cepheid variable stars in the nuclear bulge of the Milky Way.

    abstract::The nuclear bulge is a region with a radius of about 200 parsecs around the centre of the Milky Way. It contains stars with ages ranging from a few million years to over a billion years, yet its star-formation history and the triggering process for star formation remain to be resolved. Recently, episodic star formatio...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature10359

    authors: Matsunaga N,Kawadu T,Nishiyama S,Nagayama T,Kobayashi N,Tamura M,Bono G,Feast MW,Nagata T

    更新日期:2011-08-24 00:00:00

  • Regulation of DNA-replication origins during cell-cycle progression.

    abstract::We have shown previously that chromosome VI of Saccharomyces cerevisiae contains nine origins of DNA replication that differ in initiation frequency and replicate sequentially during the S phase of the cell cycle. Here we show that there are links between activation of these multiple origins and regulation of S-phase ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/27007

    authors: Shirahige K,Hori Y,Shiraishi K,Yamashita M,Takahashi K,Obuse C,Tsurimoto T,Yoshikawa H

    更新日期:1998-10-08 00:00:00

  • The perception of heading during eye movements.

    abstract::When a person walks through a rigid environment while holding eyes and head fixed, the pattern of retinal motion flows radially away from a point, the focus of expansion (Fig. 1a). Under such conditions of translation, heading corresponds to the focus of expansion and people identify it readily. But when making an eye...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/360583a0

    authors: Royden CS,Banks MS,Crowell JA

    更新日期:1992-12-10 00:00:00

  • Chaperonin-mediated protein folding at the surface of groEL through a 'molten globule'-like intermediate.

    abstract::Folding of two monomeric enzymes mediated by groE has been reconstituted in vitro. The groEL protein stabilizes the polypeptides in a conformation resembling the 'molten globule' state. Mg-ATP and groES then promote the acquisition of ordered tertiary structure at the surface of groEL. Folding requires the hydrolysis ...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/352036a0

    authors: Martin J,Langer T,Boteva R,Schramel A,Horwich AL,Hartl FU

    更新日期:1991-07-04 00:00:00

  • Male development of chromosomally female mice transgenic for Sry.

    abstract::The initiation of male development in mammals requires one or more genes on the Y chromosome. A recently isolated gene, termed SRY in humans and Sry in mouse, has many of the genetic and biological properties expected of a Y-located testis-determining gene. It is now shown that Sry on a 14-kilobase genomic DNA fragmen...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/351117a0

    authors: Koopman P,Gubbay J,Vivian N,Goodfellow P,Lovell-Badge R

    更新日期:1991-05-09 00:00:00

  • Terminal pattern elements in Drosophila embryo induced by the torso-like protein.

    abstract::The genes torso (tor) and torso-like (tsl) are two of the Drosophila maternal group genes implicated in a receptor tyrosine kinase signalling pathway that specifies terminal cell fate (reviewed in ref. 3). Loss-of-function mutations in these loci cause an identical phenotype in which pattern elements from the anterior...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/367741a0

    authors: Martin JR,Raibaud A,Ollo R

    更新日期:1994-02-24 00:00:00

  • A quantized microwave quadrupole insulator with topologically protected corner states.

    abstract::The theory of electric polarization in crystals defines the dipole moment of an insulator in terms of a Berry phase (geometric phase) associated with its electronic ground state. This concept not only solves the long-standing puzzle of how to calculate dipole moments in crystals, but also explains topological band str...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature25777

    authors: Peterson CW,Benalcazar WA,Hughes TL,Bahl G

    更新日期:2018-03-14 00:00:00

  • A visual motion detection circuit suggested by Drosophila connectomics.

    abstract::Animal behaviour arises from computations in neuronal circuits, but our understanding of these computations has been frustrated by the lack of detailed synaptic connection maps, or connectomes. For example, despite intensive investigations over half a century, the neuronal implementation of local motion detection in t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature12450

    authors: Takemura SY,Bharioke A,Lu Z,Nern A,Vitaladevuni S,Rivlin PK,Katz WT,Olbris DJ,Plaza SM,Winston P,Zhao T,Horne JA,Fetter RD,Takemura S,Blazek K,Chang LA,Ogundeyi O,Saunders MA,Shapiro V,Sigmund C,Rubin GM,Scheffe

    更新日期:2013-08-08 00:00:00

  • Apolipoprotein E controls cerebrovascular integrity via cyclophilin A.

    abstract::Human apolipoprotein E has three isoforms: APOE2, APOE3 and APOE4. APOE4 is a major genetic risk factor for Alzheimer's disease and is associated with Down's syndrome dementia and poor neurological outcome after traumatic brain injury and haemorrhage. Neurovascular dysfunction is present in normal APOE4 carriers and i...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature11087

    authors: Bell RD,Winkler EA,Singh I,Sagare AP,Deane R,Wu Z,Holtzman DM,Betsholtz C,Armulik A,Sallstrom J,Berk BC,Zlokovic BV

    更新日期:2012-05-16 00:00:00

  • Seismic evidence for convection-driven motion of the North American plate.

    abstract::Since the discovery of plate tectonics, the relative importance of driving forces of plate motion has been debated. Resolution of this issue has been hindered by uncertainties in estimates of basal traction, which controls the coupling between lithospheric plates and underlying mantle convection. Hotspot tracks preser...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature05675

    authors: Eaton DW,Frederiksen A

    更新日期:2007-03-22 00:00:00

  • Noise-resistant and synchronized oscillation of the segmentation clock.

    abstract::Periodic somite segmentation in vertebrate embryos is controlled by the 'segmentation clock', which consists of numerous cellular oscillators. Although the properties of a single oscillator, driven by a hairy negative-feedback loop, have been investigated, the system-level properties of the segmentation clock remain l...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature04861

    authors: Horikawa K,Ishimatsu K,Yoshimoto E,Kondo S,Takeda H

    更新日期:2006-06-08 00:00:00

  • Association of folding intermediates of glycoproteins with calnexin during protein maturation.

    abstract::Calnexin, an endoplasmic reticulum transmembrane protein, represents a new type of molecular chaperone that selectively associates in a transient fashion with newly synthesized monomeric glycoproteins in HepG2 cells. Calnexin only recognizes glycoproteins when they are incompletely folded. Dissociation of glycoprotein...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/364771a0

    authors: Ou WJ,Cameron PH,Thomas DY,Bergeron JJ

    更新日期:1993-08-26 00:00:00

  • BH1 and BH2 domains of Bcl-2 are required for inhibition of apoptosis and heterodimerization with Bax.

    abstract::Bcl-2 was isolated from the t(14;18) chromosomal breakpoint in follicular B-cell lymphoma. Bcl-2 has the unique oncogenic role of extending cell survival by inhibiting a variety of apoptotic deaths. An emerging family of Bcl-2-related proteins share two highly conserved regions referred to here as Bcl-2 homology 1 and...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/369321a0

    authors: Yin XM,Oltvai ZN,Korsmeyer SJ

    更新日期:1994-05-26 00:00:00

  • A natural variant and engineered mutation in a GPCR promote DEET resistance in C. elegans.

    abstract::DEET (N,N-diethyl-meta-toluamide) is a synthetic chemical identified by the US Department of Agriculture in 1946 in a screen for repellents to protect soldiers from mosquito-borne diseases1,2. Since its discovery, DEET has become the world's most widely used arthropod repellent and is effective against invertebrates s...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-018-0546-8

    authors: Dennis EJ,Dobosiewicz M,Jin X,Duvall LB,Hartman PS,Bargmann CI,Vosshall LB

    更新日期:2018-10-01 00:00:00

  • A salmonella protein antagonizes Rac-1 and Cdc42 to mediate host-cell recovery after bacterial invasion.

    abstract::An essential feature of the bacterial pathogen Salmonella spp. is its ability to enter cells that are normally non-phagocytic, such as those of the intestinal epithelium. The bacterium achieves entry by delivering effector proteins into the host-cell cytosol by means of a specialized protein-secretion system (termed t...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/45829

    authors: Fu Y,Galán JE

    更新日期:1999-09-16 00:00:00

  • Attosecond nonlinear polarization and light-matter energy transfer in solids.

    abstract::Electric-field-induced charge separation (polarization) is the most fundamental manifestation of the interaction of light with matter and a phenomenon of great technological relevance. Nonlinear optical polarization produces coherent radiation in spectral ranges inaccessible by lasers and constitutes the key to ultima...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature17650

    authors: Sommer A,Bothschafter EM,Sato SA,Jakubeit C,Latka T,Razskazovskaya O,Fattahi H,Jobst M,Schweinberger W,Shirvanyan V,Yakovlev VS,Kienberger R,Yabana K,Karpowicz N,Schultze M,Krausz F

    更新日期:2016-06-02 00:00:00

  • From the archive.

    abstract:: ...

    journal_title:Nature

    pub_type: 新闻

    doi:10.1038/d41586-018-07356-3

    authors:

    更新日期:2018-11-01 00:00:00

  • Neural circuits underlying a psychotherapeutic regimen for fear disorders.

    abstract::A psychotherapeutic regimen that uses alternating bilateral sensory stimulation (ABS) has been used to treat post-traumatic stress disorder. However, the neural basis that underlies the long-lasting effect of this treatment-described as eye movement desensitization and reprocessing-has not been identified. Here we des...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/s41586-019-0931-y

    authors: Baek J,Lee S,Cho T,Kim SW,Kim M,Yoon Y,Kim KK,Byun J,Kim SJ,Jeong J,Shin HS

    更新日期:2019-02-01 00:00:00

  • A dispersive morph in the naked mole-rat.

    abstract::Close inbreeding is known for a variety of small mammal species for which a high probability of mortality during dispersal makes helping and delayed maturation a relatively secure fitness option. Prolonged inbreeding, however, is usually associated with lowered fitness, and it has been shown that most highly inbred sm...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/380619a0

    authors: O'Riain MJ,Jarvis JU,Faulkes CG

    更新日期:1996-04-18 00:00:00

  • Direct control of shoot meristem activity by a cytokinin-activating enzyme.

    abstract::The growth of plants depends on continuous function of the meristems. Shoot meristems are responsible for all the post-embryonic aerial organs, such as leaves, stems and flowers. It has been assumed that the phytohormone cytokinin has a positive role in shoot meristem function. A severe reduction in the size of merist...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/nature05504

    authors: Kurakawa T,Ueda N,Maekawa M,Kobayashi K,Kojima M,Nagato Y,Sakakibara H,Kyozuka J

    更新日期:2007-02-08 00:00:00

  • Consecutive inactivation of both alleles of the pim-1 proto-oncogene by homologous recombination in embryonic stem cells.

    abstract::Specific genes can be inactivated or mutated in the mouse germ line. The phenotypic consequences of the mutation can provide pivotal information on the function of the gene in development and maintenance of the mammalian organism. The procedure entails homologous recombination in embryonic stem cells, which, on fusion...

    journal_title:Nature

    pub_type: 杂志文章

    doi:10.1038/348649a0

    authors: te Riele H,Maandag ER,Clarke A,Hooper M,Berns A

    更新日期:1990-12-13 00:00:00