Structural Biology and Electron Microscopy of the Autophagy Molecular Machinery.

Abstract:

:Autophagy is a highly regulated bulk degradation process that plays a key role in the maintenance of cellular homeostasis. During autophagy, a double membrane-bound compartment termed the autophagosome is formed through de novo nucleation and assembly of membrane sources to engulf unwanted cytoplasmic components and targets them to the lysosome or vacuole for degradation. Central to this process are the autophagy-related (ATG) proteins, which play a critical role in plant fitness, immunity, and environmental stress response. Over the past few years, cryo-electron microscopy (cryo-EM) and single-particle analysis has matured into a powerful and versatile technique for the structural determination of protein complexes at high resolution and has contributed greatly to our current understanding of the molecular mechanisms underlying autophagosome biogenesis. Here we describe the plant-specific ATG proteins and summarize recent structural and mechanistic studies on the protein machinery involved in autophagy initiation with an emphasis on those by single-particle analysis.

journal_name

Cells

journal_title

Cells

authors

Lai LTF,Ye H,Zhang W,Jiang L,Lau WCY

doi

10.3390/cells8121627

subject

Has Abstract

pub_date

2019-12-12 00:00:00

issue

12

issn

2073-4409

pii

cells8121627

journal_volume

8

pub_type

杂志文章,评审

相关文献

Cells文献大全
  • Nicotinamide Supplementation during the In Vitro Maturation of Oocytes Improves the Developmental Competence of Preimplantation Embryos: Potential Link to SIRT1/AKT Signaling.

    abstract::Nicotinamide (NAM), the amide form of vitamin B3, plays pivotal roles in regulating various cellular processes including energy production and maintenance of genomic stability. The current study aimed at deciphering the effect of NAM, when administered during in vitro maturation (IVM), on the developmental competence ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9061550

    authors: El Sheikh M,Mesalam AA,Idrees M,Sidrat T,Mesalam A,Lee KL,Kong IK

    更新日期:2020-06-25 00:00:00

  • Use of a Hybrid Adeno-Associated Viral Vector Transposon System to Deliver the Insulin Gene to Diabetic NOD Mice.

    abstract::Previously, we used a lentiviral vector to deliver furin-cleavable human insulin (INS-FUR) to the livers in several animal models of diabetes using intervallic infusion in full flow occlusion (FFO), with resultant reversal of diabetes, restoration of glucose tolerance and pancreatic transdifferentiation (PT), due to t...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9102227

    authors: La QT,Ren B,Logan GJ,Cunningham SC,Khandekar N,Nassif NT,O'Brien BA,Alexander IE,Simpson AM

    更新日期:2020-10-02 00:00:00

  • The Intrinsically Disordered C-Terminal Domain Triggers Nucleolar Localization and Function Switch of PARN in Response to DNA Damage.

    abstract::Poly(A)-specific ribonuclease (PARN), a multifunctional multi-domain deadenylase, is crucial to the regulation of mRNA turnover and the maturation of various non-coding RNAs. Despite extensive studies of the well-folding domains responsible for PARN catalysis, the structure and function of the C-terminal domain (CTD) ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8080836

    authors: Duan TL,He GJ,Hu LD,Yan YB

    更新日期:2019-08-05 00:00:00

  • DNA Damage Changes Distribution Pattern and Levels of HP1 Protein Isoforms in the Nucleolus and Increases Phosphorylation of HP1β-Ser88.

    abstract::The family of heterochromatin protein 1 (HP1) isoforms is essential for chromatin packaging, regulation of gene expression, and repair of damaged DNA. Here we document that γ-radiation reduced the number of HP1α-positive foci, but not HP1β and HP1γ foci, located in the vicinity of the fibrillarin-positive region of th...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8091097

    authors: Legartová S,Lochmanová G,Zdráhal Z,Kozubek S,Šponer J,Krepl M,Pokorná P,Bártová E

    更新日期:2019-09-17 00:00:00

  • Receptor Tyrosine Kinase Ubiquitination and De-Ubiquitination in Signal Transduction and Receptor Trafficking.

    abstract::Receptor tyrosine kinases (RTKs) are membrane-based sensors that enable rapid communication between cells and their environment. Evidence is now emerging that interdependent regulatory mechanisms, such as membrane trafficking, ubiquitination, proteolysis and gene expression, have substantial effects on RTK signal tran...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells7030022

    authors: Critchley WR,Pellet-Many C,Ringham-Terry B,Harrison MA,Zachary IC,Ponnambalam S

    更新日期:2018-03-15 00:00:00

  • Nevoid Basal Cell Carcinoma Syndrome: PTCH1 Mutation Profile and Expression of Genes Involved in the Hedgehog Pathway in Argentinian Patients.

    abstract::Nevoid basal cell carcinoma syndrome (NBCCS) is an autosomal dominant disorder characterized by multiple basal cell carcinomas (BCC), mainly caused by PTCH1 gene mutations. Our current study aimed to establish (1) PTCH1 germinal and somatic mutational status, (2) component and Hedgehog (HH) pathway targets gene expres...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8020144

    authors: Martinez MF,Romano MV,Martinez AP,González A,Muchnik C,Stengel FM,Mazzuoccolo LD,Azurmendi PJ

    更新日期:2019-02-11 00:00:00

  • Decreased Equilibrative Nucleoside Transporter 1 (ENT1) Activity Contributes to the High Extracellular Adenosine Levels in Mesenchymal Glioblastoma Stem-Like Cells.

    abstract::Glioblastoma multiforme is one of the most malignant types of cancer. This is mainly due to a cell subpopulation with an extremely aggressive potential, called glioblastoma stem-like cells (GSCs). These cells produce high levels of extracellular adenosine which has been associated with increased chemoresistance, migra...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9081914

    authors: Alarcón S,Toro MLÁ,Villarreal C,Melo R,Fernández R,Ayuso Sacido A,Uribe D,San Martín R,Quezada C

    更新日期:2020-08-18 00:00:00

  • Hyperglycemia-Induced Aberrant Cell Proliferation; A Metabolic Challenge Mediated by Protein O-GlcNAc Modification.

    abstract::Chronic hyperglycemia has been associated with an increased prevalence of pathological conditions including cardiovascular disease, cancer, or various disorders of the immune system. In some cases, these associations may be traced back to a common underlying cause, but more often, hyperglycemia and the disturbance in ...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells8090999

    authors: Nagy T,Fisi V,Frank D,Kátai E,Nagy Z,Miseta A

    更新日期:2019-08-28 00:00:00

  • An Immediate and Long-Term Complication of COVID-19 May Be Type 2 Diabetes Mellitus: The Central Role of β-Cell Dysfunction, Apoptosis and Exploration of Possible Mechanisms.

    abstract::The novel coronavirus disease 2019 (COVID-19) caused by the severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) was declared a pandemic by the WHO on 19 March 2020. This pandemic is associated with markedly elevated blood glucose levels and a remarkable degree of insulin resistance, which suggests pancreatic ...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells9112475

    authors: Hayden MR

    更新日期:2020-11-13 00:00:00

  • Circulating Non-Coding RNAs in Head and Neck Cancer: Roles in Diagnosis, Prognosis, and Therapy Monitoring.

    abstract::Head and neck cancer (HNC), the seventh most common form of cancer worldwide, is a group of epithelial malignancies affecting sites in the upper aerodigestive tract. The 5-year overall survival for patients with HNC has stayed around 40-50% for decades, with mortality being attributable mainly to late diagnosis and re...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells10010048

    authors: Diez-Fraile A,Ceulaer J,Derpoorter C,Spaas C,Backer T,Lamoral P,Abeloos J,Lammens T

    更新日期:2020-12-31 00:00:00

  • Diagnostic and Therapeutic Potential of TSPO Studies Regarding Neurodegenerative Diseases, Psychiatric Disorders, Alcohol Use Disorders, Traumatic Brain Injury, and Stroke: An Update.

    abstract::Neuroinflammation and cell death are among the common symptoms of many central nervous system diseases and injuries. Neuroinflammation and programmed cell death of the various cell types in the brain appear to be part of these disorders, and characteristic for each cell type, including neurons and glia cells. Concerni...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells9040870

    authors: Dimitrova-Shumkovska J,Krstanoski L,Veenman L

    更新日期:2020-04-02 00:00:00

  • Increased Expression of Meteorin-Like Hormone in Type 2 Diabetes and Obesity and Its Association with Irisin.

    abstract::Type 2 diabetes (T2D) is a growing pandemic associated with metabolic dysregulation and chronic inflammation. Meteorin-like hormone (METRNL) is an adipomyokine that is linked to T2D. Our objective was to evaluate the changes in METRNL levels in T2D and obesity and assess the association of METRNL levels with irisin. O...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8101283

    authors: AlKhairi I,Cherian P,Abu-Farha M,Madhoun AA,Nizam R,Melhem M,Jamal M,Al-Sabah S,Ali H,Tuomilehto J,Al-Mulla F,Abubaker J

    更新日期:2019-10-19 00:00:00

  • Quantitative In-Depth Analysis of the Mouse Mast Cell Transcriptome Reveals Organ-Specific Mast Cell Heterogeneity.

    abstract::Mast cells (MCs) are primarily resident hematopoietic tissue cells that are localized at external and internal surfaces of the body where they act in the first line of defense. MCs are found in all studied vertebrates and have also been identified in tunicates, an early chordate. To obtain a detailed insight into the ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9010211

    authors: Akula S,Paivandy A,Fu Z,Thorpe M,Pejler G,Hellman L

    更新日期:2020-01-14 00:00:00

  • Leukocyte-Derived Extracellular Vesicles in Blood with and without EpCAM Enrichment.

    abstract::Large tumor-derived Extracellular Vesicles (tdEVs) detected in blood of metastatic prostate, breast, colorectal, and non-small cell lung cancer patients after enrichment for Epithelial Cell Adhesion Molecule (EpCAM) expression and labeling with 4',6-diamidino-2-phenylindole (DAPI), phycoerythrin-conjugated antibodies ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8080937

    authors: Nanou A,Zeune LL,Terstappen LWMM

    更新日期:2019-08-20 00:00:00

  • Autophagy Modulators Profoundly Alter the Astrocyte Cellular Proteome.

    abstract::Autophagy is a key cellular process that involves constituent degradation and recycling during cellular development and homeostasis. Autophagy also plays key roles in antimicrobial host defense and numerous pathogenic organisms have developed strategies to take advantage of and/or modulate cellular autophagy. Several ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9040805

    authors: Sher AA,Gao A,Coombs KM

    更新日期:2020-03-26 00:00:00

  • Reading between the (Genetic) Lines: How Epigenetics is Unlocking Novel Therapies for Type 1 Diabetes.

    abstract::Type 1 diabetes (T1D) is an autoimmune condition where the body's immune cells destroy their insulin-producing pancreatic beta cells leading to dysregulated glycaemia. Individuals with T1D control their blood glucose through exogenous insulin replacement therapy, often using multiple daily injections or pumps. However...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells9112403

    authors: Akil AA,Jerman LF,Yassin E,Padmajeya SS,Al-Kurbi A,Fakhro KA

    更新日期:2020-11-03 00:00:00

  • Deficiency of GABARAP but not its Paralogs Causes Enhanced EGF-induced EGFR Degradation.

    abstract::The γ-aminobutyric acid type A receptor-associated protein (GABARAP) and its close paralogs GABARAPL1 and GABARAPL2 constitute a subfamily of the autophagy-related 8 (Atg8) protein family. Being associated with a variety of dynamic membranous structures of autophagic and non-autophagic origin, Atg8 proteins functional...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9051296

    authors: Dobner J,Simons IM,Rufinatscha K,Hänsch S,Schwarten M,Weiergräber OH,Abdollahzadeh I,Gensch T,Bode JG,Hoffmann S,Willbold D

    更新日期:2020-05-22 00:00:00

  • An Epistatic Interaction between Pnpla2 and Lipe Reveals New Pathways of Adipose Tissue Lipolysis.

    abstract::White adipose tissue (WAT) lipolysis contributes to energy balance during fasting. Lipolysis can proceed by the sequential hydrolysis of triglycerides (TGs) by adipose triglyceride lipase (ATGL), then of diacylglycerols (DGs) by hormone-sensitive lipase (HSL). We showed that the combined genetic deficiency of ATGL and...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8050395

    authors: Zhang X,Zhang CC,Yang H,Soni KG,Wang SP,Mitchell GA,Wu JW

    更新日期:2019-04-29 00:00:00

  • Prediction of Potential miRNA-Disease Associations Through a Novel Unsupervised Deep Learning Framework with Variational Autoencoder.

    abstract::The important role of microRNAs (miRNAs) in the formation, development, diagnosis, and treatment of diseases has attracted much attention among researchers recently. In this study, we present an unsupervised deep learning model of the variational autoencoder for MiRNA-disease association prediction (VAEMDA). Through c...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8091040

    authors: Zhang L,Chen X,Yin J

    更新日期:2019-09-06 00:00:00

  • Melatonin's Antineoplastic Potential Against Glioblastoma.

    abstract::Glioblastoma (GBM) is one of the most intransigent and aggressive brain tumors, and its treatment is extremely challenging and ineffective. To improve patients' expectancy and quality of life, new therapeutic approaches were investigated. Melatonin is an endogenous indoleamine with an incredible variety of properties....

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells9030599

    authors: Moretti E,Favero G,Rodella LF,Rezzani R

    更新日期:2020-03-03 00:00:00

  • Neuron-Glia Interactions in Tuberous Sclerosis Complex Affect the Synaptic Balance in 2D and Organoid Cultures.

    abstract::Tuberous sclerosis complex (TSC) is a genetic disease affecting the brain. Neurological symptoms like epilepsy and neurodevelopmental issues cause a significant burden on patients. Both neurons and glial cells are affected by TSC mutations. Previous studies have shown changes in the excitation/inhibition balance (E/I ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells10010134

    authors: Dooves S,van Velthoven AJH,Suciati LG,Heine VM

    更新日期:2021-01-12 00:00:00

  • Molecular Mechanisms Associated with ROR1-Mediated Drug Resistance: Crosstalk with Hippo-YAP/TAZ and BMI-1 Pathways.

    abstract::Signaling via the Wnt-related receptor tyrosine kinase-like orphan receptor 1 (ROR1) triggers tumorigenic features associated with cancer stem cells (CSCs) and epithelial-mesenchymal transition (EMT), while aberrant expression of ROR1 is strongly linked to advanced disease progression and chemoresistance. Several rece...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells8080812

    authors: Karvonen H,Barker H,Kaleva L,Niininen W,Ungureanu D

    更新日期:2019-08-02 00:00:00

  • Evolution of Regulated Transcription.

    abstract::The genomes of all organisms abound with various cis-regulatory elements, which control gene activity. Transcriptional enhancers are a key group of such elements in eukaryotes and are DNA regions that form physical contacts with gene promoters and precisely orchestrate gene expression programs. Here, we follow gradual...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells9071675

    authors: Bylino OV,Ibragimov AN,Shidlovskii YV

    更新日期:2020-07-12 00:00:00

  • Differential Mechanisms of Cell Death Induced by HDAC Inhibitor SAHA and MDM2 Inhibitor RG7388 in MCF-7 Cells.

    abstract::Gene expression is often altered by epigenetic modifications that can significantly influence the growth ability and progression of cancers. SAHA (Suberoylanilide hydroxamic acid, also known as Vorinostat), a well-known Histone deacetylase (HDAC) inhibitor, can stop cancer growth and metastatic processes through epige...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8010008

    authors: Natarajan U,Venkatesan T,Radhakrishnan V,Samuel S,Rathinavelu A

    更新日期:2018-12-22 00:00:00

  • Fibronectin Regulation of Integrin B1 and SLUG in Circulating Tumor Cells.

    abstract::Metastasis is the leading cause of cancer death worldwide. Circulating tumor cells (CTCs) are a critical step in the metastatic cascade and a good tool to study this process. We isolated CTCs from a syngeneic mouse model of hepatocellular carcinoma (HCC) and a human xenograft mouse model of castration-resistant prosta...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8060618

    authors: Huaman J,Naidoo M,Zang X,Ogunwobi OO

    更新日期:2019-06-20 00:00:00

  • Circulating Brain Injury Exosomal Proteins following Moderate-To-Severe Traumatic Brain Injury: Temporal Profile, Outcome Prediction and Therapy Implications.

    abstract::Brain injury exosomal proteins are promising blood biomarker candidates in traumatic brain injury (TBI). A better understanding of their role in the diagnosis, characterization, and management of TBI is essential for upcoming clinical implementation. In the current investigation, we aimed to explore longitudinal traje...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9040977

    authors: Mondello S,Guedes VA,Lai C,Czeiter E,Amrein K,Kobeissy F,Mechref Y,Jeromin A,Mithani S,Martin C,Wagner CL,Czigler A,Tóth L,Fazekas B,Buki A,Gill J

    更新日期:2020-04-15 00:00:00

  • Limited Proteolysis-Coupled Mass Spectrometry Identifies Phosphatidylinositol 4,5-Bisphosphate Effectors in Human Nuclear Proteome.

    abstract::Specific nuclear sub-compartments that are regions of fundamental processes such as gene expression or DNA repair, contain phosphoinositides (PIPs). PIPs thus potentially represent signals for the localization of specific proteins into different nuclear functional domains. We performed limited proteolysis followed by ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells10010068

    authors: Sztacho M,Šalovská B,Červenka J,Balaban C,Hoboth P,Hozák P

    更新日期:2021-01-04 00:00:00

  • Different Calculation Strategies Are Congruent in Determining Chemotherapy Resistance of Brain Tumors In Vitro.

    abstract::In cancer pharmacology, a drug candidate's therapeutic potential is typically expressed as its ability to suppress cell growth. Different methods in assessing the cell phenotype and calculating the drug effect have been established. However, inconsistencies in drug response outcomes have been reported, and it is still...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells9122689

    authors: Fischer I,Nickel AC,Qin N,Taban K,Pauck D,Steiger HJ,Kamp M,Muhammad S,Hänggi D,Fritsche E,Remke M,Kahlert UD

    更新日期:2020-12-15 00:00:00

  • Therapeutic Application of Micellar Solubilized Xanthohumol in a Western-Type Diet-Induced Mouse Model of Obesity, Diabetes and Non-Alcoholic Fatty Liver Disease.

    abstract::Xanthohumol (XN), a prenylated chalcone from hops, has been reported to exhibit a variety of health-beneficial effects. However, poor bioavailability may limit its application in the prevention and therapy of diseases. The objective of this study was to determine whether a micellar solubilization of xanthohumol could ...

    journal_title:Cells

    pub_type: 杂志文章

    doi:10.3390/cells8040359

    authors: Mahli A,Seitz T,Freese K,Frank J,Weiskirchen R,Abdel-Tawab M,Behnam D,Hellerbrand C

    更新日期:2019-04-17 00:00:00

  • The Endothelium as a Driver of Liver Fibrosis and Regeneration.

    abstract::Liver fibrosis is a common feature of sustained liver injury and represents a major public health problem worldwide. Fibrosis is an active research field and discoveries in the last years have contributed to the development of new antifibrotic drugs, although none of them have been approved yet. Liver sinusoidal endot...

    journal_title:Cells

    pub_type: 杂志文章,评审

    doi:10.3390/cells9040929

    authors: Lafoz E,Ruart M,Anton A,Oncins A,Hernández-Gea V

    更新日期:2020-04-10 00:00:00