Multimodal Long Noncoding RNA Interaction Networks: Control Panels for Cell Fate Specification.

Abstract:

:Lineage specification in early development is the basis for the exquisitely precise body plan of multicellular organisms. It is therefore critical to understand cell fate decisions in early development. Moreover, for regenerative medicine, the accurate specification of cell types to replace damaged/diseased tissue is strongly dependent on identifying determinants of cell identity. Long noncoding RNAs (lncRNAs) have been shown to regulate cellular plasticity, including pluripotency establishment and maintenance, differentiation and development, yet broad phenotypic analysis and the mechanistic basis of their function remains lacking. As components of molecular condensates, lncRNAs interact with almost all classes of cellular biomolecules, including proteins, DNA, mRNAs, and microRNAs. With functions ranging from controlling alternative splicing of mRNAs, to providing scaffolding upon which chromatin modifiers are assembled, it is clear that at least a subset of lncRNAs are far from the transcriptional noise they were once deemed. This review highlights the diversity of lncRNA interactions in the context of cell fate specification, and provides examples of each type of interaction in relevant developmental contexts. Also highlighted are experimental and computational approaches to study lncRNAs.

journal_name

Genetics

journal_title

Genetics

authors

Smith KN,Miller SC,Varani G,Calabrese JM,Magnuson T

doi

10.1534/genetics.119.302661

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

1093-1110

issue

4

eissn

0016-6731

issn

1943-2631

pii

genetics.119.302661

journal_volume

213

pub_type

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