Are personalities genetically determined? Inferences from subsocial spiders.

Abstract:

BACKGROUND:Recent research has revealed that polymorphic behavioral strategies shape intra-and interspecific interactions and contribute to fitness in many animal species. A better understanding of the proximate mechanisms underlying these behavioral syndromes will enhance our grasp this phenomenon. Spiders in the genus Anelosimus exhibit inter-individual behavioral variation on several axes: individuals have consistent responses to stimuli (e.g. bold vs. shy individuals) and they are subsocial (exhibiting extended maternal care and sibling cooperation) across most of their range, but they sometimes form permanent social groups in northern temperate regions. Here, we seek genetic variants associated with boldness and with social structure in a socially polymorphic population of the spider Anelosimus studiosus. We also develop preliminary genomic resources, including a genome assembly and linkage map, that support this and future genomic research on this group. RESULTS:Remarkably, we identify a small genomic scaffold (~ 1200 bp) that harbors seven single nucleotide polymorphisms (SNPs) associated with boldness. Moreover, heterozygotes are less common than expected based on Hardy-Weinberg equilibrium, suggesting that either assortative mating or selection against heterozygotes may be occurring in this system. We find no loci significantly associated with social organization. Our draft genome assembly allows us to localize SNPs of interest in this study and to carry out genetic comparisons with other published genomes, although it remains highly fragmented. CONCLUSIONS:By identifying a locus associated with a well-studied animal personality trait, this study opens up avenues for future research to link behavioral studies of animal personality with genotype and fitness.

journal_name

BMC Genomics

journal_title

BMC genomics

authors

Purcell J,Pruitt JN

doi

10.1186/s12864-019-6172-5

subject

Has Abstract

pub_date

2019-11-22 00:00:00

pages

867

issue

1

issn

1471-2164

pii

10.1186/s12864-019-6172-5

journal_volume

20

pub_type

杂志文章
  • In silico identification of genes involved in selenium metabolism: evidence for a third selenium utilization trait.

    abstract:BACKGROUND:Selenium (Se) is a trace element that occurs in proteins in the form of selenocysteine (Sec) and in tRNAs in the form of selenouridine (SeU). Selenophosphate synthetase (SelD) is required for both utilization traits. However, previous research also revealed SelDs in two organisms lacking Sec and SeU, suggest...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-9-251

    authors: Zhang Y,Turanov AA,Hatfield DL,Gladyshev VN

    更新日期:2008-05-29 00:00:00

  • Expansion of the Bactericidal/Permeability Increasing-like (BPI-like) protein locus in cattle.

    abstract:BACKGROUND:Cattle and other ruminants have evolved the ability to derive most of their metabolic energy requirement from otherwise indigestible plant matter through a symbiotic relationship with plant fibre degrading microbes within a specialised fermentation chamber, the rumen. The genetic changes underlying the evolu...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-8-75

    authors: Wheeler TT,Hood KA,Maqbool NJ,McEwan JC,Bingle CD,Zhao S

    更新日期:2007-03-15 00:00:00

  • Correction to: Comparative transcriptomics reveals PrrABmediated control of metabolic, respiration, energy-generating, and dormancy pathways in Mycobacterium smegmatis.

    abstract::Following the publication of the original article [1], the authors reported an error in Fig. 2 of the PDF version of their article. ...

    journal_title:BMC genomics

    pub_type: 杂志文章,已发布勘误

    doi:10.1186/s12864-019-6419-1

    authors: Maarsingh JD,Yang S,Park JG,Haydel SE

    更新日期:2019-12-31 00:00:00

  • Transcriptional effects of a positive feedback circuit in Drosophila melanogaster.

    abstract:BACKGROUND:Synthetic systems that use positive feedback have been developed to control human disease vectors and crop pests. The tTAV system, which has been deployed in several insect species, relies on a positive feedback circuit that can be inhibited via dietary tetracycline. Although insects carrying tTAV fail to su...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-017-4385-z

    authors: Bryk J,Reeves RG,Reed FA,Denton JA

    更新日期:2017-12-28 00:00:00

  • Five distinct biological processes and 14 differentially expressed genes characterize TEL/AML1-positive leukemia.

    abstract:BACKGROUND:The t(12;21)(p13;q22) translocation is found in 20 to 25% of cases of childhood B-lineage acute lymphoblastic leukemia (B-ALL). This rearrangement results in the fusion of ETV6 (TEL) and RUNX1 (AML1) genes and defines a relatively uniform category, although only some patients suffer very late relapse. TEL/AM...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-8-385

    authors: Gandemer V,Rio AG,de Tayrac M,Sibut V,Mottier S,Ly Sunnaram B,Henry C,Monnier A,Berthou C,Le Gall E,Le Treut A,Schmitt C,Le Gall JY,Mosser J,Galibert MD

    更新日期:2007-10-23 00:00:00

  • Core-genome scaffold comparison reveals the prevalence that inversion events are associated with pairs of inverted repeats.

    abstract:BACKGROUND:Genome rearrangement describes gross changes of chromosomal regions, plays an important role in evolutionary biology and has profound impacts on phenotype in organisms ranging from microbes to humans. With more and more complete genomes accomplished, lots of genomic comparisons have been conducted in order t...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-017-3655-0

    authors: Wang D,Li S,Guo F,Ning K,Wang L

    更新日期:2017-03-29 00:00:00

  • Does replication groups scoring reduce false positive rate in SNP interaction discovery?

    abstract:BACKGROUND:Computational methods that infer single nucleotide polymorphism (SNP) interactions from phenotype data may uncover new biological mechanisms in non-Mendelian diseases. However, practical aspects of such analysis face many problems. Present experimental studies typically use SNP arrays with hundreds of thousa...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-11-58

    authors: Toplak M,Curk T,Demsar J,Zupan B

    更新日期:2010-01-22 00:00:00

  • Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites.

    abstract:BACKGROUND:The transcription factors peroxisome proliferator activated receptor γ (PPARγ) and CCAAT/enhancer binding protein α (C/EBPα) are key transcriptional regulators of adipocyte differentiation and function. We and others have previously shown that binding sites of these two transcription factors show a high degr...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-12-152

    authors: Schmidt SF,Jørgensen M,Chen Y,Nielsen R,Sandelin A,Mandrup S

    更新日期:2011-03-16 00:00:00

  • Wheat EST resources for functional genomics of abiotic stress.

    abstract:BACKGROUND:Wheat is an excellent species to study freezing tolerance and other abiotic stresses. However, the sequence of the wheat genome has not been completely characterized due to its complexity and large size. To circumvent this obstacle and identify genes involved in cold acclimation and associated stresses, a la...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-7-149

    authors: Houde M,Belcaid M,Ouellet F,Danyluk J,Monroy AF,Dryanova A,Gulick P,Bergeron A,Laroche A,Links MG,MacCarthy L,Crosby WL,Sarhan F

    更新日期:2006-06-13 00:00:00

  • Forward genetic screen of human transposase genomic rearrangements.

    abstract:BACKGROUND:Numerous human genes encode potentially active DNA transposases or recombinases, but our understanding of their functions remains limited due to shortage of methods to profile their activities on endogenous genomic substrates. RESULTS:To enable functional analysis of human transposase-derived genes, we comb...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-016-2877-x

    authors: Henssen AG,Jiang E,Zhuang J,Pinello L,Socci ND,Koche R,Gonen M,Villasante CM,Armstrong SA,Bauer DE,Weng Z,Kentsis A

    更新日期:2016-08-04 00:00:00

  • LtrDetector: A tool-suite for detecting long terminal repeat retrotransposons de-novo.

    abstract:BACKGROUND:Long terminal repeat retrotransposons are the most abundant transposons in plants. They play important roles in alternative splicing, recombination, gene regulation, and defense mechanisms. Large-scale sequencing projects for plant genomes are currently underway. Software tools are important for annotating l...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-019-5796-9

    authors: Valencia JD,Girgis HZ

    更新日期:2019-06-03 00:00:00

  • Endogenous circadian time genes expressions in the liver of mice under constant darkness.

    abstract:BACKGROUND:The circadian rhythms regulate physiological functions and metabolism. Circadian Time (CT) is a unit to quantify the rhythm of endogenous circadian clock, independent of light influence. To understand the gene expression changes throughout CT, C57BL/6 J mice were maintained under constant darkness (DD) for 6...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-020-6639-4

    authors: Li H,Zhang S,Zhang W,Chen S,Rabearivony A,Shi Y,Liu J,Corton CJ,Liu C

    更新日期:2020-03-12 00:00:00

  • Identification and analysis of long non-coding RNAs and mRNAs in chicken macrophages infected with avian infectious bronchitis coronavirus.

    abstract:BACKGROUND:Avian infectious bronchitis virus (IBV) is a gamma coronavirus that severely affects the poultry industry worldwide. Long non-coding RNAs (lncRNAs), a subset of non-coding RNAs with a length of more than 200 nucleotides, have been recently recognized as pivotal factors in the pathogenesis of viral infections...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-020-07359-3

    authors: Li H,Cui P,Fu X,Zhang L,Yan W,Zhai Y,Lei C,Wang H,Yang X

    更新日期:2021-01-20 00:00:00

  • Genome-wide genetic structure and selection signatures for color in 10 traditional Chinese yellow-feathered chicken breeds.

    abstract:BACKGROUND:Yellow-feathered chickens (YFCs) have a long history in China. They are well-known for the nutritional and commercial importance attributable to their yellow color phenotype. Currently, there is a huge paucity in knowledge of the genetic determinants responsible for phenotypic and biochemical properties of t...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-020-6736-4

    authors: Huang X,Otecko NO,Peng M,Weng Z,Li W,Chen J,Zhong M,Zhong F,Jin S,Geng Z,Luo W,He D,Ma C,Han J,Ommeh SC,Zhang Y,Zhang X,Du B

    更新日期:2020-04-20 00:00:00

  • 2009 pandemic H1N1 influenza virus elicits similar clinical course but differential host transcriptional response in mouse, macaque, and swine infection models.

    abstract:BACKGROUND:The 2009 pandemic H1N1 influenza virus emerged in swine and quickly became a major global health threat. In mouse, non human primate, and swine infection models, the pH1N1 virus efficiently replicates in the lung and induces pro-inflammatory host responses; however, whether similar or different cellular path...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-13-627

    authors: Go JT,Belisle SE,Tchitchek N,Tumpey TM,Ma W,Richt JA,Safronetz D,Feldmann H,Katze MG

    更新日期:2012-11-15 00:00:00

  • Identification and functional analysis of early gene expression induced by circadian light-resetting in Drosophila.

    abstract:BACKGROUND:The environmental light-dark cycle is the dominant cue that maintains 24-h biological rhythms in multicellular organisms. In Drosophila, light entrainment is mediated by the photosensitive protein CRYPTOCHROME, but the role and extent of transcription regulation in light resetting of the dipteran clock is ye...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-015-1787-7

    authors: Adewoye AB,Kyriacou CP,Tauber E

    更新日期:2015-08-01 00:00:00

  • RNA-seq analysis provides insights into cold stress responses of Xanthomonas citri pv. citri.

    abstract:BACKGROUND:Xanthomonas citri pv. citri (Xcc) is a citrus canker causing Gram-negative bacteria. Currently, little is known about the biological and molecular responses of Xcc to low temperatures. RESULTS:Results depicted that low temperature significantly reduced growth and increased biofilm formation and unsaturated ...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-019-6193-0

    authors: Liao JX,Li KH,Wang JP,Deng JR,Liu QG,Chang CQ

    更新日期:2019-11-06 00:00:00

  • Genomic predictions combining SNP markers and copy number variations in Nellore cattle.

    abstract:BACKGROUND:Due to the advancement in high throughput technology, single nucleotide polymorphism (SNP) is routinely being incorporated along with phenotypic information into genetic evaluation. However, this approach often cannot achieve high accuracy for some complex traits. It is possible that SNP markers are not suff...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-018-4787-6

    authors: Hay EHA,Utsunomiya YT,Xu L,Zhou Y,Neves HHR,Carvalheiro R,Bickhart DM,Ma L,Garcia JF,Liu GE

    更新日期:2018-06-05 00:00:00

  • Gene content dissimilarity for subclassification of highly similar microbial strains.

    abstract:BACKGROUND:Identification and classification of highly similar microbial strains is a challenging issue in microbiology, ecology and evolutionary biology. Among various available approaches, gene content analysis is also at the core of microbial taxonomy. However, no threshold has been determined for grouping microorgn...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-016-2991-9

    authors: Tu Q,Lin L

    更新日期:2016-08-17 00:00:00

  • Comparative genomics of 84 Pectobacterium genomes reveals the variations related to a pathogenic lifestyle.

    abstract:BACKGROUND:Pectobacterium spp. are necrotrophic bacterial plant pathogens of the family Pectobacteriaceae, responsible for a wide spectrum of diseases of important crops and ornamental plants including soft rot, blackleg, and stem wilt. P. carotovorum is a genetically heterogeneous species consisting of three valid sub...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-018-5269-6

    authors: Li X,Ma Y,Liang S,Tian Y,Yin S,Xie S,Xie H

    更新日期:2018-12-07 00:00:00

  • Analysis of microRNAs, phased small interfering RNAs and their potential targets in Rosarugosa Thunb.

    abstract:BACKGROUND:MicroRNAs (miRNAs) are small non-coding RNAs that play important roles by regulating other genes. Rosa rugosa Thunb. is an important ornamental and edible plant, yet there are only a few studies on the miRNAs and their functions in R. rugosa. RESULTS:We sequenced 10 samll RNA profiles from the roots, petals...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-018-5325-2

    authors: Guo J,Wang Q,Liu L,Ren S,Li S,Liao P,Zhao Z,Lu C,Jiang B,Sunkar R,Zheng Y

    更新日期:2019-04-18 00:00:00

  • Blood-based epigenetic estimators of chronological age in human adults using DNA methylation data from the Illumina MethylationEPIC array.

    abstract:BACKGROUND:Epigenetic clocks have been recognized for their precise prediction of chronological age, age-related diseases, and all-cause mortality. Existing epigenetic clocks are based on CpGs from the Illumina HumanMethylation450 BeadChip (450 K) which has now been replaced by the latest platform, Illumina Methylation...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-020-07168-8

    authors: Lee Y,Haftorn KL,Denault WRP,Nustad HE,Page CM,Lyle R,Lee-Ødegård S,Moen GH,Prasad RB,Groop LC,Sletner L,Sommer C,Magnus MC,Gjessing HK,Harris JR,Magnus P,Håberg SE,Jugessur A,Bohlin J

    更新日期:2020-10-27 00:00:00

  • A Caenorhabditis motif compendium for studying transcriptional gene regulation.

    abstract:BACKGROUND:Controlling gene expression is fundamental to biological complexity. The nematode Caenorhabditis elegans is an important model for studying principles of gene regulation in multi-cellular organisms. A comprehensive parts list of putative regulatory motifs was yet missing for this model system. In this study,...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-9-30

    authors: Dieterich C,Sommer RJ

    更新日期:2008-01-23 00:00:00

  • Whole-genome phylogenies of the family Bacillaceae and expansion of the sigma factor gene family in the Bacillus cereus species-group.

    abstract:BACKGROUND:The Bacillus cereus sensu lato group consists of six species (B. anthracis, B. cereus, B. mycoides, B. pseudomycoides, B. thuringiensis, and B. weihenstephanensis). While classical microbial taxonomy proposed these organisms as distinct species, newer molecular phylogenies and comparative genome sequencing s...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-12-430

    authors: Schmidt TR,Scott EJ 2nd,Dyer DW

    更新日期:2011-08-24 00:00:00

  • Estimating survival time of patients with glioblastoma multiforme and characterization of the identified microRNA signatures.

    abstract:BACKGROUND:Though glioblastoma multiforme (GBM) is the most frequently occurring brain malignancy in adults, clinical treatment still faces challenges due to poor prognoses and tumor relapses. Recently, microRNAs (miRNAs) have been extensively used with the aim of developing accurate molecular therapies, because of the...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-016-3321-y

    authors: Yerukala Sathipati S,Huang HL,Ho SY

    更新日期:2016-12-22 00:00:00

  • Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli.

    abstract:BACKGROUND:Transcription factors (TFs) play essential roles during plant development and response to environmental stresses. However, the relationships among transcription factors, cis-acting elements and target gene expression under endo- and exogenous stimuli have not been systematically characterized. RESULTS:Here,...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-018-4469-4

    authors: Chow CN,Chiang-Hsieh YF,Chien CH,Zheng HQ,Lee TY,Wu NY,Tseng KC,Hou PF,Chang WC

    更新日期:2018-05-09 00:00:00

  • Directionality of point mutation and 5-methylcytosine deamination rates in the chimpanzee genome.

    abstract:BACKGROUND:The pattern of point mutation is important for studying mutational mechanisms, genome evolution, and diseases. Previous studies of mutation direction were largely based on substitution data from a limited number of loci. To date, there is no genome-wide analysis of mutation direction or methylation-dependent...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/1471-2164-7-316

    authors: Jiang C,Zhao Z

    更新日期:2006-12-13 00:00:00

  • New genomic data and analyses challenge the traditional vision of animal epithelium evolution.

    abstract:BACKGROUND:The emergence of epithelia was the foundation of metazoan expansion. Epithelial tissues are a hallmark of metazoans deeply rooted in the evolution of their complex developmental morphogenesis processes. However, studies on the epithelial features of non-bilaterians are still sparse and it remains unclear whe...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-018-4715-9

    authors: Belahbib H,Renard E,Santini S,Jourda C,Claverie JM,Borchiellini C,Le Bivic A

    更新日期:2018-05-24 00:00:00

  • A genomics-based systems approach towards drug repositioning for rheumatoid arthritis.

    abstract:BACKGROUND:Rheumatoid arthritis (RA) is a chronic autoimmune disease characterized by inflammation and destruction of synovial joints. RA affects up to 1 % of the population worldwide. Currently, there are no drugs that can cure RA or achieve sustained remission. The unknown cause of the disease represents a significan...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-016-2910-0

    authors: Xu R,Wang Q

    更新日期:2016-08-22 00:00:00

  • A genome-wide analysis of the phospholipid: diacylglycerol acyltransferase gene family in Gossypium.

    abstract:BACKGROUND:Cotton (Gossypium spp.) is the most important natural fiber crop worldwide, and cottonseed oil is its most important byproduct. Phospholipid: diacylglycerol acyltransferase (PDAT) is important in TAG biosynthesis, as it catalyzes the transfer of a fatty acyl moiety from the sn-2 position of a phospholipid to...

    journal_title:BMC genomics

    pub_type: 杂志文章

    doi:10.1186/s12864-019-5728-8

    authors: Zang X,Geng X,Ma L,Wang N,Pei W,Wu M,Zhang J,Yu J

    更新日期:2019-05-22 00:00:00