dendPoint: a web resource for dendrimer pharmacokinetics investigation and prediction.

Abstract:

:Nanomedicine development currently suffers from a lack of efficient tools to predict pharmacokinetic behavior without relying upon testing in large numbers of animals, impacting success rates and development costs. This work presents dendPoint, the first in silico model to predict the intravenous pharmacokinetics of dendrimers, a commonly explored drug vector, based on physicochemical properties. We have manually curated the largest relational database of dendrimer pharmacokinetic parameters and their structural/physicochemical properties. This was used to develop a machine learning-based model capable of accurately predicting pharmacokinetic parameters, including half-life, clearance, volume of distribution and dose recovered in the liver and urine. dendPoint successfully predicts dendrimer pharmacokinetic properties, achieving correlations of up to r = 0.83 and Q2 up to 0.68. dendPoint is freely available as a user-friendly web-service and database at http://biosig.unimelb.edu.au/dendpoint . This platform is ultimately expected to be used to guide dendrimer construct design and refinement prior to embarking on more time consuming and expensive in vivo testing.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Kaminskas LM,Pires DEV,Ascher DB

doi

10.1038/s41598-019-51789-3

subject

Has Abstract

pub_date

2019-10-29 00:00:00

pages

15465

issue

1

issn

2045-2322

pii

10.1038/s41598-019-51789-3

journal_volume

9

pub_type

杂志文章
  • Associations of oxygenated hemoglobin with disease burden and prognosis in stable COPD: Results from COSYCONET.

    abstract::We studied whether in patients with stable COPD blood gases (BG), especially oxygenated hemoglobin (OxyHem) as a novel biomarker confer information on disease burden and prognosis and how this adds to the information provided by the comorbidity pattern and systemic inflammation. Data from 2137 patients (GOLD grades 1-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-67197-x

    authors: Trudzinski FC,Jörres RA,Alter P,Kahnert K,Waschki B,Herr C,Kellerer C,Omlor A,Vogelmeier CF,Fähndrich S,Watz H,Welte T,Jany B,Söhler S,Biertz F,Herth F,Kauczor HU,Bals R,COSYCONET consortium.

    更新日期:2020-06-29 00:00:00

  • A genetically encoded fluorescent temperature sensor derived from the photoactive Orange Carotenoid Protein.

    abstract::The heterogeneity of metabolic reactions leads to a non-uniform distribution of temperature in different parts of the living cell. The demand to study normal functioning and pathological abnormalities of cellular processes requires the development of new visualization methods. Previously, we have shown that the 35-kDa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45421-7

    authors: Maksimov EG,Yaroshevich IA,Tsoraev GV,Sluchanko NN,Slutskaya EA,Shamborant OG,Bobik TV,Friedrich T,Stepanov AV

    更新日期:2019-06-20 00:00:00

  • Microbial copper reduction method to scavenge anthropogenic radioiodine.

    abstract::Unexpected reactor accidents and radioisotope production and consumption have led to a continuous increase in the global-scale contamination of radionuclides. In particular, anthropogenic radioiodine has become critical due to its highly volatile mobilization and recycling in global environments, resulting in widespre...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28113

    authors: Lee SY,Lee JY,Min JH,Kim SS,Baik MH,Chung SY,Lee M,Lee Y

    更新日期:2016-06-17 00:00:00

  • Diagnostic accuracy of contrast enhanced ultrasound in patients with blunt abdominal trauma presenting to the emergency department: a systematic review and meta-analysis.

    abstract::We aimed to investigate the diagnostic accuracy of contrast-enhanced ultrasound (CEUS) in evaluating blunt abdominal trauma for patients presenting to the emergency department. Electronic search of Scopus and Pubmed was performed from inception to September 2016. Human studies investigating the diagnostic accuracy of ...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41598-017-04779-2

    authors: Zhang Z,Hong Y,Liu N,Chen Y

    更新日期:2017-06-30 00:00:00

  • A multiplex serologic platform for diagnosis of tick-borne diseases.

    abstract::Tick-borne diseases are the most common vector-borne diseases in the United States, with serology being the primary method of diagnosis. We developed the first multiplex, array-based assay for serodiagnosis of tick-borne diseases called the TBD-Serochip. The TBD-Serochip was designed to discriminate antibody responses...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-21349-2

    authors: Tokarz R,Mishra N,Tagliafierro T,Sameroff S,Caciula A,Chauhan L,Patel J,Sullivan E,Gucwa A,Fallon B,Golightly M,Molins C,Schriefer M,Marques A,Briese T,Lipkin WI

    更新日期:2018-02-16 00:00:00

  • Synthesis of two-dimensional Tl(x)Bi(1-x) compounds and Archimedean encoding of their atomic structure.

    abstract::Crystalline atomic layers on solid surfaces are composed of a single building block, unit cell, that is copied and stacked together to form the entire two-dimensional crystal structure. However, it appears that this is not an unique possibility. We report here on synthesis and characterization of the one-atomic-layer-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep19446

    authors: Gruznev DV,Bondarenko LV,Matetskiy AV,Mihalyuk AN,Tupchaya AY,Utas OA,Eremeev SV,Hsing CR,Chou JP,Wei CM,Zotov AV,Saranin AA

    更新日期:2016-01-19 00:00:00

  • A comprehensive validation of HBV-related acute-on-chronic liver failure models to assist decision-making in targeted therapeutics.

    abstract::This research utilized an external longitudinal dataset of hepatitis B virus-related acute-on-chronic liver failure (HBV-ACLF) to compare and validate various predictive models that support the current recommendations to select the most effective predictive risk models to estimate short- and long-term mortality and fa...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep33389

    authors: Shen Y,Wang X,Zhang S,Qin G,Liu Y,Lu Y,Liang F,Zhuang X

    更新日期:2016-09-16 00:00:00

  • Mapping of topological quantum circuits to physical hardware.

    abstract::Topological quantum computation is a promising technique to achieve large-scale, error-corrected computation. Quantum hardware is used to create a large, 3-dimensional lattice of entangled qubits while performing computation requires strategic measurement in accordance with a topological circuit specification. The spe...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep04657

    authors: Paler A,Devitt SJ,Nemoto K,Polian I

    更新日期:2014-04-11 00:00:00

  • The Value of CBCT-based Tumor Density and Volume Variations in Prediction of Early Response to Chemoradiation Therapy in Advanced NSCLC.

    abstract::The correlations between early responses and the variations in physical density and primary tumor volume (TV) according to cone-beam computed tomography (CBCT) during chemoradiotherapy for non-small cell lung cancer (NSCLC) patients were investigated. 54 patients with inoperable and locally advanced NSCLC were include...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-14548-w

    authors: Wen Q,Zhu J,Meng X,Ma C,Bai T,Sun X,Yu J

    更新日期:2017-11-07 00:00:00

  • Angiogenesis and evading immune destruction are the main related transcriptomic characteristics to the invasive process of oral tongue cancer.

    abstract::Metastasis of head and neck tumors is responsible for a high mortality rate. Understanding its biochemistry may allow insights into tumorigenesis. To that end we carried out RNA-Seq analyses of 5 SCC9 derived oral cancer cell lines displaying increased invasive potential. Differentially expressed genes (DEGs) were ann...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-19010-5

    authors: Pérez-Valencia JA,Prosdocimi F,Cesari IM,da Costa IR,Furtado C,Agostini M,Rumjanek FD

    更新日期:2018-01-31 00:00:00

  • The astrocytic transporter SLC7A10 (Asc-1) mediates glycinergic inhibition of spinal cord motor neurons.

    abstract::SLC7A10 (Asc-1) is a sodium-independent amino acid transporter known to facilitate transport of a number of amino acids including glycine, L-serine, L-alanine, and L-cysteine, as well as their D-enantiomers. It has been described as a neuronal transporter with a primary role related to modulation of excitatory glutama...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep35592

    authors: Ehmsen JT,Liu Y,Wang Y,Paladugu N,Johnson AE,Rothstein JD,du Lac S,Mattson MP,Höke A

    更新日期:2016-10-19 00:00:00

  • Simulating photoacoustic waves produced by individual biological particles with spheroidal wave functions.

    abstract::Under the usual approximation of treating a biological particle as a spheroidal droplet, we consider the analysis of its size and shape with the high frequency photoacoustics and develop a numerical method which can simulate its characteristic photoacoustic waves. This numerical method is based on the calculation of s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep14801

    authors: Li Y,Fang H,Min C,Yuan X

    更新日期:2015-10-07 00:00:00

  • Myocardin ablation in a cardiac-renal rat model.

    abstract::Cardiorenal syndrome is defined by primary heart failure conditions influencing or leading to renal injury or dysfunction. Dilated cardiomyopathy (DCM) is a major co-existing form of heart failure (HF) with renal diseases. Myocardin (MYOCD), a cardiac-specific co-activator of serum response factor (SRF), is increased ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-42009-z

    authors: Mittal A,Rana S,Sharma R,Kumar A,Prasad R,Raut SK,Sarkar S,Saikia UN,Bahl A,Dhandapany PS,Khullar M

    更新日期:2019-04-10 00:00:00

  • Neurocognitive mechanisms underlying working memory encoding and retrieval in Attention-Deficit/Hyperactivity Disorder.

    abstract::Working memory (WM) impairments in ADHD have been consistently reported along with deficits in attentional control. Yet, it is not clear which specific WM processes are affected in this condition. A deficient coupling between attention and WM has been reported. Nevertheless, most studies focus on the capacity to retai...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-64678-x

    authors: Ortega R,López V,Carrasco X,Escobar MJ,García AM,Parra MA,Aboitiz F

    更新日期:2020-05-08 00:00:00

  • Arm Selection Preference of MicroRNA-193a Varies in Breast Cancer.

    abstract::MicroRNAs (miRNAs) are short noncoding RNAs derived from the 3' and 5' ends of the same precursor. However, the biological function and mechanism of miRNA arm expression preference remain unclear in breast cancer. We found significant decreases in the expression levels of miR-193a-5p but no significant differences in ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep28176

    authors: Tsai KW,Leung CM,Lo YH,Chen TW,Chan WC,Yu SY,Tu YT,Lam HC,Li SC,Ger LP,Liu WS,Chang HT

    更新日期:2016-06-16 00:00:00

  • Gene network analysis identifies rumen epithelial cell proliferation, differentiation and metabolic pathways perturbed by diet and correlated with methane production.

    abstract::Ruminants obtain nutrients from microbial fermentation of plant material, primarily in their rumen, a multilayered forestomach. How the different layers of the rumen wall respond to diet and influence microbial fermentation, and how these process are regulated, is not well understood. Gene expression correlation netwo...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39022

    authors: Xiang R,McNally J,Rowe S,Jonker A,Pinares-Patino CS,Oddy VH,Vercoe PE,McEwan JC,Dalrymple BP

    更新日期:2016-12-14 00:00:00

  • Comprehensive validation of T- and B-cell deficiency in rag1-null zebrafish: Implication for the robust innate defense mechanisms of teleosts.

    abstract::rag1 -/- zebrafish have been employed in immunological research as a useful immunodeficient vertebrate model, but with only fragmentary evidence for the lack of functional adaptive immunity. rag1-null zebrafish exhibit differences from their human and murine counterparts in that they can be maintained without any spec...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-08000-2

    authors: Tokunaga Y,Shirouzu M,Sugahara R,Yoshiura Y,Kiryu I,Ototake M,Nagasawa T,Somamoto T,Nakao M

    更新日期:2017-08-08 00:00:00

  • Pore cross-talk in colloidal filtration.

    abstract::Blockage of pores by particles is found in many processes, including filtration and oil extraction. We present filtration experiments through a linear array of ten channels with one dimension which is sub-micron, through which a dilute dispersion of Brownian polystyrene spheres flows under the action of a fixed pressu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-30389-7

    authors: Liot O,Singh A,Bacchin P,Duru P,Morris JF,Joseph P

    更新日期:2018-08-20 00:00:00

  • Controlled Peptide-Mediated Vesicle Fusion Assessed by Simultaneous Dual-Colour Time-Lapsed Fluorescence Microscopy.

    abstract::We have employed a model system, inspired by SNARE proteins, to facilitate membrane fusion between Giant Unilamellar Vesicles (GUVs) and Large Unilamellar Vesicles (LUVs) under physiological conditions. In this system, two synthetic lipopeptide constructs comprising the coiled-coil heterodimer-forming peptides K4, (KI...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59926-z

    authors: Mora NL,Boyle AL,Kolck BJV,Rossen A,Pokorná Š,Koukalová A,Šachl R,Hof M,Kros A

    更新日期:2020-02-20 00:00:00

  • Redox activation of JNK2α2 mediates thyroid hormone-stimulated proliferation of neonatal murine cardiomyocytes.

    abstract::Mitochondria-generated reactive oxygen species (mROS) are frequently associated with DNA damage and cell cycle arrest, but physiological increases in mROS serve to regulate specific cell functions. T3 is a major regulator of mROS, including hydrogen peroxide (H2O2). Here we show that exogenous thyroid hormone (T3) adm...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-53705-1

    authors: Tan L,Bogush N,Naib H,Perry J,Calvert JW,Martin DIK,Graham RM,Naqvi N,Husain A

    更新日期:2019-11-27 00:00:00

  • SHH signaling directed by two oral epithelium-specific enhancers controls tooth and oral development.

    abstract::Interaction between the epithelium and mesenchyme coordinates patterning and differentiation of oral cavity structures including teeth, palatal rugae and tongue papillae. SHH is one of the key signaling molecules for this interaction. Epithelial expression of Shh in the tooth buds and tongue papillae is regulated by a...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-12532-y

    authors: Sagai T,Amano T,Maeno A,Kiyonari H,Seo H,Cho SW,Shiroishi T

    更新日期:2017-10-11 00:00:00

  • Post-glacial biogeography of trembling aspen inferred from habitat models and genetic variance in quantitative traits.

    abstract::Using species distribution models and information on genetic structure and within-population variance observed in a series of common garden trials, we reconstructed a historical biogeography of trembling aspen in North America. We used an ensemble classifier modelling approach (RandomForest) to reconstruct palaeoclima...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-04871-7

    authors: Ding C,Schreiber SG,Roberts DR,Hamann A,Brouard JS

    更新日期:2017-07-05 00:00:00

  • Collision with duplex DNA renders Escherichia coli DNA polymerase III holoenzyme susceptible to DNA polymerase IV-mediated polymerase switching on the sliding clamp.

    abstract::Organisms possess multiple DNA polymerases (Pols) and use each for a different purpose. One of the five Pols in Escherichia coli, DNA polymerase IV (Pol IV), encoded by the dinB gene, is known to participate in lesion bypass at certain DNA adducts. To understand how cells choose Pols when the replication fork encounte...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-13080-1

    authors: Le TT,Furukohri A,Tatsumi-Akiyama M,Maki H

    更新日期:2017-10-16 00:00:00

  • Stainless steel bipolar plate coated with polyaniline/Zn-Porphyrin composites coatings for proton exchange membrane fuel cell.

    abstract::The proton exchange membrane fuel cells are the promising sustainable energy sources. The present study focuses on the enhancement the fuel cell performance and the protection of the stainless steel bipolar plate from the corrosion using polyaniline/Zn-Porphyrin composites coatings. The electrochemical properties (pol...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60288-9

    authors: Deyab MA,Mele G

    更新日期:2020-02-24 00:00:00

  • Knockdown Indian Hedgehog (Ihh) does not delay Fibular Fracture Healing in genetic deleted Ihh mice and pharmaceutical inhibited Ihh Mice.

    abstract::The objective of this study was to determine if Ihh is required for fracture healing. Fibular fracture was created in adult Col2a1-CreERT2; Ihhfl/fl mice. Ihhfl/fl mice received Tamoxifen (TM) to delete Ihh. WT mice received Cyclopamine to inhibit Hh pathway. Callus tissue properties and Ihh pathway were analyzed at 1...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-28657-7

    authors: Li S,Xiang C,Wei X,Li H,Li K,Sun X,Wang S,Zhang M,Deng J,Wang X,Li P,Li R,Zhang Y,Wei L

    更新日期:2018-07-09 00:00:00

  • Magma transport in sheet intrusions of the Alnö carbonatite complex, central Sweden.

    abstract::Magma transport through the Earth's crust occurs dominantly via sheet intrusions, such as dykes and cone-sheets, and is fundamental to crustal evolution, volcanic eruptions and geochemical element cycling. However, reliable methods to reconstruct flow direction in solidified sheet intrusions have proved elusive. Aniso...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep27635

    authors: Andersson M,Almqvist BS,Burchardt S,Troll VR,Malehmir A,Snowball I,Kübler L

    更新日期:2016-06-10 00:00:00

  • The Th1/Th17 balance dictates the fibrosis response in murine radiation-induced lung disease.

    abstract::Radiotherapy can result in lung diseases pneumonitis or fibrosis dependent on patient susceptibility. Herein we used inbred and genetically altered mice to investigate whether the tissue adaptive immune response to radiation injury influences the development of radiation-induced lung disease. Six inbred mouse strains ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-11656-5

    authors: Paun A,Bergeron ME,Haston CK

    更新日期:2017-09-14 00:00:00

  • Genome wide association study identifies novel potential candidate genes for bovine milk cholesterol content.

    abstract::This study aimed to identify single nucleotide polymorphisms (SNPs) associated with milk cholesterol (CHL) content via a genome wide association study (GWAS). Milk CHL content was determined by gas chromatography and expressed as mg of CHL in 100 g of fat (CHL_fat) or in 100 mg of milk (CHL_milk). GWAS was performed w...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-31427-0

    authors: Do DN,Schenkel FS,Miglior F,Zhao X,Ibeagha-Awemu EM

    更新日期:2018-09-05 00:00:00

  • Factors associated with false negative interferon-γ release assay results in patients with tuberculosis: A systematic review with meta-analysis.

    abstract::Which factors are related to false negative results of the interferon-γ release assay (IGRA) is unclear. This systematic review described the risk factors associated with false negative IGRA results. Two authors independently identified studies designed to evaluate risk factors for false negative IGRA results from Pub...

    journal_title:Scientific reports

    pub_type: 杂志文章,meta分析

    doi:10.1038/s41598-020-58459-9

    authors: Yamasue M,Komiya K,Usagawa Y,Umeki K,Nureki SI,Ando M,Hiramatsu K,Nagai H,Kadota JI

    更新日期:2020-01-31 00:00:00

  • Identifying vital nodes in complex networks by adjacency information entropy.

    abstract::Identifying the vital nodes in networks is of great significance for understanding the function of nodes and the nature of networks. Many centrality indices, such as betweenness centrality (BC), eccentricity centrality (EC), closeness centricity (CC), structural holes (SH), degree centrality (DC), PageRank (PR) and ei...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-59616-w

    authors: Xu X,Zhu C,Wang Q,Zhu X,Zhou Y

    更新日期:2020-02-14 00:00:00