Proteome analysis of reticuloendotheliosis-virus-infected chicken embryo fibroblast cells through iTRAQ-based quantitative proteomics.

Abstract:

:Reticuloendotheliosis virus (REV) is an important representative avian retrovirus. To improve our understanding of the host cellular responses to virus infection and the pathogenesis of REV infection, we applied isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled with multidimensional liquid chromatography-tandem mass spectrometry to detect changes in protein levels in chicken embryo fibroblast cells (CEFs) that were infected with REV or mock infected. In total, 605 cellular proteins were differentially expressed, among which 196, 345, and 286 were differentially expressed in REV-infected CEFs at 1, 3, and 5 days postinfection, respectively. Gene Ontology analysis indicated that the biological processes of the differentially expressed proteins were primarily related to cellular processes, metabolic processes, biological regulation, response to stimulus, and immune system processes and that the molecular functions in which the differentially expressed proteins were mainly involved were binding, catalytic activity, and enzyme regulator activity. Pathway analysis showed that a total of 143, 167, and 179 pathways, including protein digestion and absorption, focal adhesion, ECM-receptor interaction, cytokine-cytokine receptor interaction, Toll-like receptors, and JAK-STAT signaling, were enriched in REV-infected CEFs at 1, 3, and 5 days postinfection, respectively. In conclusion, this study is the first to analyze the protein profile of REV-infected CEFs using an iTRAQ approach. The results of this study provide valuable information for better understanding the host response to REV infection.

journal_name

Arch Virol

journal_title

Archives of virology

authors

Hu F,Li Y,Yu K,Ma X,Liu C,Guo X,Song M,Wu J,Huang B

doi

10.1007/s00705-019-04409-4

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

2995-3006

issue

12

eissn

0304-8608

issn

1432-8798

pii

10.1007/s00705-019-04409-4

journal_volume

164

pub_type

杂志文章
  • Evidence for a bovine origin of the polyomavirus detected in foetal rhesus monkey kidney cells, FRhK-4 and -6.

    abstract::Rabbit antisera to the stump-tailed macaque polyomavirus (STMV) which had been shown by immunoelectron microscopy and indirect immunofluorescence to react with the polyomavirus found in FRhK-4 cells (FRKV), also gave precipitin lines in counter-immunoelectrophoresis (CIE) and double diffusion in gel (GD) when reacted ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01311311

    authors: Parry JV,Lucas MH,Richmond JE,Gardner SD

    更新日期:1983-01-01 00:00:00

  • Genetic and phylogenetic analysis of a new porcine circovirus type 2 (PCV2) strain in China.

    abstract::Porcine circovirus type 2 (PCV2) is the etiological agent associated with several pig diseases that are collectively referred to as porcine circovirus-associated disease (PCVAD). Unfortunately, PCV2 has had a serious economic impact on the swine industry. In this study, we report the genome sequence of a novel PCV2 is...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2615-8

    authors: Zhang D,He K,Wen L,Fan H

    更新日期:2015-12-01 00:00:00

  • Molecular characterization of a canine coronavirus NA/09 strain detected in a dog's organs.

    abstract::In the present study, the detection of a pantropic canine coronavirus (CCoV) strain in a dog with lethal diarrhoea is reported. RT-PCR and real-time RT-PCR assays were used for the detection, characterization and quantitation of CCoV. Sequence and phylogenetic analysis of the CCoV NA/09 revealed a high degree of seque...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1141-6

    authors: Ntafis V,Xylouri E,Mari V,Papanastassopoulou M,Papaioannou N,Thomas A,Buonavoglia C,Decaro N

    更新日期:2012-01-01 00:00:00

  • Identification and full-length molecular characterization of rare hepatitis C virus genotype 5a from India.

    abstract::This report presents a molecular characterization of the complete genome of a rare hepatitis C virus (HCV) genotype (GT5a) from India. Sequence homology of full genome revealed that the strain belonged to HCV GT5a. To trace the origin of this virus and to understand its evolutionary pattern, a phylogenetic reconstruct...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-014-2220-2

    authors: Choudhary MC,Gupta E,Pandey P,Natarajan V,Sharma S,Vashishtha C,Sharma MK,Kazim SN,Sarin SK

    更新日期:2015-01-01 00:00:00

  • Molecular characterization of bovine leukemia virus from Moldovan dairy cattle.

    abstract::Bovine leukemia virus (BLV) is the causative agent of enzootic bovine leukosis (EBL), a disease that has worldwide distribution. Whilst it has been eradicated in most of Western Europe and Scandinavia, it remains a problem in other regions, particularly Eastern Europe and South America. For this study, in 2013, 24 cat...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-017-3241-4

    authors: Pluta A,Rola-Łuszczak M,Kubiś P,Balov S,Moskalik R,Choudhury B,Kuźmak J

    更新日期:2017-06-01 00:00:00

  • The HIV-1 V3 domain on field isolates: participation in generation of escape virus in vivo and accessibility to neutralizing antibodies.

    abstract::The V3 domain is highly variable and induces HIV neutralizing antibodies (NA). Here we addressed the issues of 1) the participation of mutations in V3 in generation of neutralization resistant escape virus in vivo and 2) the applicability of synthetic V3 peptides corresponding to field isolates to induce neutralizing ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01309956

    authors: Arendrup M,Akerblom L,Heegaard PM,Nielsen JO,Hansen JE

    更新日期:1995-01-01 00:00:00

  • Marek's disease virus microRNA designated Mdv1-pre-miR-M4 targets both cellular and viral genes.

    abstract::Mdv1-miR-M4 is one of 25 microRNAs (miRNAs) expressed by Marek's disease virus (MDV-1), an oncogenic alphaherpesvirus that induces fatal T-cell lymphoma in chickens. Mdv1-miR-M4 was shown to be the second functional viral ortholog of miR-155, a cellular miRNA that plays a crucial role in several physiological and path...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-010-0777-y

    authors: Muylkens B,Coupeau D,Dambrine G,Trapp S,Rasschaert D

    更新日期:2010-11-01 00:00:00

  • Human exposure to bovine polyomavirus: a zoonosis?

    abstract::A competitive-type solid phase radioimmunoassay (RIA) was developed for the detection of antibody to bovine polyomavirus. Comparison of RIA and counter-immunoelectrophoresis (CIE) results on 273 cattle sera indicated that both techniques were detecting antibody of like specificity. Human sera from 256 blood donors, 21...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01315306

    authors: Parry JV,Gardner SD

    更新日期:1986-01-01 00:00:00

  • Genetic variability of the coat protein sequence of pea seed-borne mosaic virus isolates and the current relationship between phylogenetic placement and resistance groups.

    abstract::Nucleotide sequences of complete or partial coat protein (CP) genes were determined for 11 isolates of pea seed-borne mosaic virus (PSbMV) from Australia and one from China, and compared with known sequences of 20 other isolates. On phylogenetic analysis, the isolates from Australia and China grouped into 2 of 3 clade...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1002-3

    authors: Wylie SJ,Coutts BA,Jones RA

    更新日期:2011-07-01 00:00:00

  • E. coli expressed proteins as diagnostic reagents for typing of foot-and-mouth disease virus.

    abstract::Truncated proteins corresponding to the C-terminal half of VP1 of four vaccine strains and two field variants of foot-and-mouth disease virus (FMDV) were expressed in E. coli. The expressed proteins were affinity purified and their type specific reactivity was confirmed by immunoprecipitation with anti-virus antibodie...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050698

    authors: Suryanarayana VV,Viswanathan S,Ratish G,Bist P,Prabhudas K,Gajendragad MR,Natarajan C

    更新日期:1999-01-01 00:00:00

  • Dynamic distribution and tissue tropism of infectious laryngotracheitis virus in experimentally infected chickens.

    abstract::Infectious laryngotracheitis (ILT), caused by infectious laryngotracheitis virus (ILTV), is an Office International des Epizooties (OIE) notifiable disease. However, we have not clearly understood the dynamic distribution, tissue tropism, pathogenesis, and replication of ILTV in chickens. In this report, we investigat...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-012-1414-8

    authors: Wang LG,Ma J,Xue CY,Wang W,Guo C,Chen F,Qin JP,Huang NH,Bi YZ,Cao YC

    更新日期:2013-03-01 00:00:00

  • Nucleotide sequence analysis of Vietnamese highly pathogenic porcine reproductive and respiratory syndrome virus from 2013 to 2014 based on the NSP2 and ORF5 coding regions.

    abstract::A total of 34 highly pathogenic porcine reproductive and respiratory syndrome virus (HP-PRRSV) strains isolated from Vietnam during 2013-2014 were sequenced and analyzed. A partial sequence of ORF1a corresponding to the nonstructural protein 2 (Nsp2) coding region and the full sequence of open reading frame 5 (ORF5) g...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-015-2699-1

    authors: Do DT,Park C,Choi K,Jeong J,Nguyen TT,Le DT,Vo KM,Chae C

    更新日期:2016-03-01 00:00:00

  • Isolation of two Chinese bovine enteroviruses and sequence analysis of their complete genomes.

    abstract::In this study, RNA corresponding to bovine enterovirus (BEV) was detected in 24.6 % of faecal samples (17/69) from diarrheic and healthy cattle in six different areas in China by an RT-PCR screening method. Furthermore, two cytopathic agents, designated as BHM26 and BJ50, were isolated from the bovine diarrheic fecal ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-012-1424-6

    authors: Li Y,Chang J,Wang Q,Yu L

    更新日期:2012-12-01 00:00:00

  • BCP/PC mutation prevalence and their association with HBV replication in HIV/HBV co-infected patients.

    abstract::The high prevalence (14.3%) of HIV/HBV co-infections reported in west China makes it necessary to screen concurrent HBV infection in HIV carriers. HBV B genotype was shown to be dominant in 54 cases of HIV/HBV co-infection, accounting for 81.48% of the total. The total drug resistance rate observed was 3.70%. A1762T, ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-018-3900-0

    authors: Li D,Chen Q,Tao C

    更新日期:2018-10-01 00:00:00

  • Differentiation of vaccine strains and field isolates of pseudorabies (Aujeszky's disease) virus: thermal sensitivity and rabbit virulence markers.

    abstract::Eleven cloned North American pseudorabies virus (PRV) strains and the European vaccine strains K and BUK were characterized by their thermal sensitivity and rabbit virulence markers. Heat sensitivity of the strains and isolates ranged from the highly heat resistant strain K, to the extremely heat labile strain BUK and...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01318093

    authors: Platt KB,Maré CJ,Hinz PN

    更新日期:1979-01-01 00:00:00

  • Progesterone suppresses interferon signaling by repressing TLR-7 and MxA expression in peripheral blood mononuclear cells of patients infected with hepatitis C virus.

    abstract::This study aimed at investigating the effect of progesterone on interferon signaling pathways in peripheral blood mononuclear cells (PBMCs) of patients infected with hepatitis C virus (HCV). PBMCs were isolated from peripheral blood of 38 treatment-naïve HCV-infected patients, pooled, and stimulated with progesterone ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-013-1673-z

    authors: Tayel SS,Helmy AA,Ahmed R,Esmat G,Hamdi N,Abdelaziz AI

    更新日期:2013-08-01 00:00:00

  • Three genetic grapevine leafroll-associated virus 3 variants identified from South African vineyards show high variability in their 5'UTR.

    abstract::Three genetic variants of grapevine leafroll-associated virus 3 (GLRaV-3) were identified in vineyards of the Western Cape, South Africa. The GLRaV-3 variants were identified by single-strand conformation polymorphism (SSCP) profiles generated from a region amplified in ORF5. ORF5 sequence data confirmed the three gen...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-010-0793-y

    authors: Jooste AE,Maree HJ,Bellstedt DU,Goszczynski DE,Pietersen G,Burger JT

    更新日期:2010-12-01 00:00:00

  • Isolation and phylogenetic characterization of bat astroviruses in southern China.

    abstract::Astroviruses are associated with acute gastroenteritis of human and many animal species. Recently, two studies have reported that novel astroviruses were found in bats. In order to extensively understand the genetic and phylogenetic characterization of bat astroviruses, we tested fecal samples of nine bat species that...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-011-1011-2

    authors: Xiao J,Li J,Hu G,Chen Z,Wu Y,Chen Y,Chen Z,Liao Y,Zhou J,Ke X,Ma L,Liu S,Zhou J,Dai Y,Chen H,Yu S,Chen Q

    更新日期:2011-08-01 00:00:00

  • Norovirus infection among children with acute gastroenteritis in Recife, Brazil: disease severity is comparable to rotavirus gastroenteritis.

    abstract::Norovirus has captured increasing attention as an agent of childhood diarrhoea. However, it is not known whether norovirus causes as severe diarrhoea as rotavirus, particularly among children in developing countries. In a 1-year study conducted between May 2004 and April 2005 in Recife, Brazil, norovirus was detected ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-008-0060-7

    authors: Nakagomi T,Correia JB,Nakagomi O,Montenegro FM,Cuevas LE,Cunliffe NA,Hart CA

    更新日期:2008-01-01 00:00:00

  • Maximum likelihood and Bayesian analyses of a combined nucleotide sequence dataset for genetic characterization of a novel pestivirus, SVA/cont-08.

    abstract::Bovine viral diarrhoea virus 1 (BVDV-1) and Bovine viral diarrhoea virus 2 (BVDV-2) are two recognised bovine pestivirus species of the genus Pestivirus. Recently, a pestivirus, termed SVA/cont-08, was detected in a batch of contaminated foetal calf serum originating from South America. Comparative sequence analysis s...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-009-0419-4

    authors: Liu L,Xia H,Baule C,Belák S

    更新日期:2009-01-01 00:00:00

  • Sequence analysis of the lymphotropic Aleutian disease parvovirus ADV-SL3.

    abstract::About 98% of the DNA sequence of the lymphotropic Aleutian disease parvovirus isolate ADV-SL3 was determined and analysed. The sequence revealed that this isolate was a type-1 ADV strain, supporting that the currently used typing of ADV viruses does not correlate with virulence or pathogenicity. ADV-SL3 had a very hig...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050066

    authors: Schuierer S,Bloom ME,Kaaden OR,Truyen U

    更新日期:1997-01-01 00:00:00

  • Genetic characterization of influenza A (H7N6) virus isolated from a live-bird market in Thailand.

    abstract::A one-year influenza A virus (IAV) monitoring program was conducted in a live-bird market (LBM) in Thailand. Using one-step real-time RT-PCR (rRT-PCR), 2.39 % of live birds were found to be IAV positive. Twenty viruses could be identified as IAV subtype H7N6. Eight IAV-H7N6 viruses were subjected to whole-genome seque...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-016-2759-1

    authors: Jairak W,Boonyapisitsopa S,Chaiyawong S,Nonthabenjawan N,Tangwangvivat R,Bunpapong N,Amonsin A

    更新日期:2016-05-01 00:00:00

  • Conservation of epitopes recognized by monoclonal antibodies against the separated subunits of influenza hemagglutinin among type A viruses of the same and different subtypes.

    abstract::Monoclonal antibodies raised against the separated hemagglutinin subunits (HA1 and HA2) of influenza A/Vic/3/75 (H3N2) virus were tested against a large panel of human and avian strains. The epitopes recognized by most antibodies were conserved among subtype H3 viruses, but reactivity of some antibodies with members o...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01319250

    authors: Sanchez-Fauquier A,Guillen M,Martin J,Kendal AP,Melero JA

    更新日期:1991-01-01 00:00:00

  • The non-structural polyprotein 3ABC of foot-and-mouth disease virus as a diagnostic antigen in ELISA to differentiate infected from vaccinated cattle.

    abstract::A diagnostic assay to differentiate antibodies induced by foot-and-mouth disease virus (FMDV) infection from those induced by vaccination was developed. The test is an indirect-trapping ELISA which uses a monoclonal antibody to trap the non-structural 3ABC-FMDV polypeptide expressed in E. coli. Experimental and field ...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s007050050219

    authors: De Diego M,Brocchi E,Mackay D,De Simone F

    更新日期:1997-01-01 00:00:00

  • Antigenic comparison of swine influenza virus isolates.

    abstract::Cross hemagglutination inhibition (HI) and neuraminidase inhibition (NI) tests demonstrated strong antigenic relationship between A/Swine/Wisconsin/1/73 (SW/73) and A/Swine/Shope/15/31 (SW/31) influenza viruses. An eigthyone fold purification of virus was achieved by adsorption and elution followed by differential ult...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01317967

    authors: Nath DM,Rodkey LS,Minocha HC

    更新日期:1975-01-01 00:00:00

  • A lipid inhibitor of dengue virus in human colostrum and milk; with a note on the absence of anti-dengue secretory antibody.

    abstract::Neutralizing activity against dengue virus types 1--4 was observed in milk samples from 5 non-immune and 29 dengue immune women. Anti-dengue activity in milk and colostrum was found only in the lipid component. The inhibitory activity is directed against the virus and not cell surfaces. When immunoglobulin types IgM,I...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01315587

    authors: Falkler WA Jr,Diwan AR,Halstead SB

    更新日期:1975-01-01 00:00:00

  • Infection in piglets with a porcine rotavirus-like virus. Experimental inoculation and ultrastructural examination.

    abstract::A rotavirus-like virus has been isolated from cases of neonatal diarrhoea in piglets. No antigenic relationship with known rotaviruses or with an American strain of a rotavirus-like virus has been demonstrated. Morphologically the virus is similar to known rotaviruses, but it differs in the ability to form syncytia of...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/BF01311220

    authors: Askaa J,Bloch B

    更新日期:1984-01-01 00:00:00

  • Correction to: Complete genome sequence of a novel bacteriophage, PBKP05, infecting Klebsiella pneumoniae.

    abstract::Unfortunately, the original article was published with incorrect accession number and the correct version is updated here. ...

    journal_title:Archives of virology

    pub_type: 杂志文章,已发布勘误

    doi:10.1007/s00705-019-04326-6

    authors: Oh HK,Cha K,Hwang YJ,Cho J,Jo Y,Myung H

    更新日期:2019-09-01 00:00:00

  • The complete nucleotide sequence of Subterranean clover mottle virus.

    abstract::The complete nucleotide sequence of Subterranean clover mottle virus (SCMoV) genomic RNA has been determined. The SCMoV genome is 4,258 nucleotides in length. It shares most nucleotide and amino acid sequence identity with the genome of Lucerne transient streak virus (LTSV). SCMoV RNA encodes four overlapping open rea...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-003-0144-3

    authors: Dwyer GI,Njeru R,Williamson S,Fosu-Nyarko J,Hopkins R,Jones RA,Waterhouse PM,Jones MG

    更新日期:2003-11-01 00:00:00

  • Complete genome sequences of two novel begomoviruses infecting common bean in Venezuela.

    abstract::The complete genome sequences of isolates of two new bipartite begomoviruses (genus Begomovirus, family Geminiviridae) found infecting common bean in Venezuela are provided. The names proposed for each of these viruses are "bean yellow chlorosis virus" (BYCV) and "bean white chlorosis mosaic virus" (BWCMV). Phylogenet...

    journal_title:Archives of virology

    pub_type: 杂志文章

    doi:10.1007/s00705-012-1545-y

    authors: Fiallo-Olivé E,Márquez-Martín B,Hassan I,Chirinos DT,Geraud-Pouey F,Navas-Castillo J,Moriones E

    更新日期:2013-03-01 00:00:00