SBOLExplorer: Data Infrastructure and Data Mining for Genetic Design Repositories.

Abstract:

:This paper describes SBOLExplorer, a system that is used to provide intuitive searching within the SynBioHub genetic design repository. SynBioHub stores genetic constructs encoded in the SBOL data format. These constructs can represent genetic parts, circuits, and sequences. These constructs are often numerous, exist in various states of completeness and documentation, and do not lend themselves to simple searching and discovery. In particular, this paper focuses on improving the search capabilities of SynBioHub. Inspiration is drawn from the techniques used to organize and search over the World Wide Web, a linked data set with many of the same properties of the SBOL data in SynBioHub. SBOLExplorer integrates these methods into SynBioHub's data representation and search, providing significant improvement over the previous search implementation based on pattern-matching.

journal_name

ACS Synth Biol

journal_title

ACS synthetic biology

authors

Zhang M,Zundel Z,Myers CJ

doi

10.1021/acssynbio.9b00089

subject

Has Abstract

pub_date

2019-10-18 00:00:00

pages

2287-2294

issue

10

issn

2161-5063

journal_volume

8

pub_type

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