Identification and characterization of SEC24D as a susceptibility gene for hepatitis B virus infection.

Abstract:

:Single nucleotide polymorphisms (SNPs) and genes associated with susceptibility to hepatitis B virus (HBV) infection that have been identified by genome-wide association studies explain only a limited portion of the known heritability, indicating more genetic variants remain to be discovered. In this study, we adopted a new research strategy to identify more susceptibility genes and variants for HBV infection. We first performed genetic association analysis of 300 sib-pairs and 3,087 case-control samples, which revealed that 36 SNPs located in 31 genes showed nominal associations with HBV infection in both samples. Of these genes, we selected SEC24D for further molecular analysis according to the following two main lines of evidence. First, a time course analysis of the expression profiles from HBV-infected primary human hepatocytes (PHH) demonstrated that SEC24D expression increased markedly as time passed after HBV infection (P = 4.0 × 10-4). Second, SNP rs76459466 in SEC24D was adversely associated with HBV risk (ORmeta = 0.82; Pmeta = 0.002), which again indicated that SEC24D represents a novel susceptibility gene for HBV infection. Moreover, SEC24D appeared to be protective against HBV infection in vitro. Consistently, we found that SEC24D expression was significantly enhanced in non-infected liver tissues (P = 0.002). We conclude that SEC24D is a novel candidate gene linked to susceptibility to HBV infection.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Jiang X,Zhang B,Zhao J,Xu Y,Han H,Su K,Tao J,Fan R,Zhao X,Li L,Li MD

doi

10.1038/s41598-019-49777-8

subject

Has Abstract

pub_date

2019-09-17 00:00:00

pages

13425

issue

1

issn

2045-2322

pii

10.1038/s41598-019-49777-8

journal_volume

9

pub_type

杂志文章
  • Biarticular muscles are most responsive to upper-body pitch perturbations in human standing.

    abstract::Balancing the upper body is pivotal for upright and efficient gait. While models have identified potentially useful characteristics of biarticular thigh muscles for postural control of the upper body, experimental evidence for their specific role is lacking. Based on theoretical findings, we hypothesised that biarticu...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50995-3

    authors: Schumacher C,Berry A,Lemus D,Rode C,Seyfarth A,Vallery H

    更新日期:2019-10-10 00:00:00

  • Irigenin, a novel lead from Western Himalayan chemiome inhibits Fibronectin-Extra Domain A induced metastasis in Lung cancer cells.

    abstract::Several lines of evidence indicate that Fibronectin Extra Domain A (EDA) promotes metastatic capacity of tumor cells by engaging cell surface α9β1 integrins. This interaction mediated by the C-C loop of EDA activates pro-oncogenic signaling pathways leading to epithelial to mesenchymal transition (EMT) of tumor cells,...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep37151

    authors: Amin A,Chikan NA,Mokhdomi TA,Bukhari S,Koul AM,Shah BA,Gharemirshamlu FR,Wafai AH,Qadri A,Qadri RA

    更新日期:2016-11-16 00:00:00

  • Rosa26-targeted sheep gene knock-in via CRISPR-Cas9 system.

    abstract::Recent advances in our ability to design DNA binding factors with specificity for desired sequences have resulted in a revolution in genetic engineering, enabling directed changes to the genome to be made relatively easily. Technologies that facilitate specific and precise genome editing, such as knock-in, are critica...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep24360

    authors: Wu M,Wei C,Lian Z,Liu R,Zhu C,Wang H,Cao J,Shen Y,Zhao F,Zhang L,Mu Z,Wang Y,Wang X,Du L,Wang C

    更新日期:2016-04-11 00:00:00

  • A novel benzamine lead compound of histone deacetylase inhibitor ZINC24469384 can suppresses HepG2 cells proliferation by upregulating NR1H4.

    abstract::Histone deacetylases (HDACs) can enzymatically transferred acetyl functional group from protein or lysine residues of histone, so they can regulate the expression of lots of genes. Now HDACs are used as drug targets and many HDAC inhibitors (HDACis) were approved for cancer therapy or in clinical trials. However, the ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-39487-6

    authors: Song Q,Li M,Fan C,Liu Y,Zheng L,Bao Y,Sun L,Yu C,Song Z,Sun Y,Wang G,Huang Y,Li Y

    更新日期:2019-02-20 00:00:00

  • Randomizing bipartite networks: the case of the World Trade Web.

    abstract::Within the last fifteen years, network theory has been successfully applied both to natural sciences and to socioeconomic disciplines. In particular, bipartite networks have been recognized to provide a particularly insightful representation of many systems, ranging from mutualistic networks in ecology to trade networ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep10595

    authors: Saracco F,Di Clemente R,Gabrielli A,Squartini T

    更新日期:2015-06-01 00:00:00

  • Effects of combining exercise with long-chain polyunsaturated fatty acid supplementation on cognitive function in the elderly: a randomised controlled trial.

    abstract::Multifactorial lifestyle intervention is known to be more effective for ameliorating cognitive decline than single factor intervention; however, the effects of combining exercise with long-chain polyunsaturated fatty acids (LCPUFA) on the elderlies' cognitive function remain unclear. We conducted a randomised, single-...

    journal_title:Scientific reports

    pub_type: 杂志文章,随机对照试验

    doi:10.1038/s41598-020-69560-4

    authors: Tokuda H,Ito M,Sueyasu T,Sasaki H,Morita S,Kaneda Y,Rogi T,Kondo S,Kouzaki M,Tsukiura T,Shibata H

    更新日期:2020-07-31 00:00:00

  • An Efficient LCM-Based Method for Tissue Specific Expression Analysis of Genes and miRNAs.

    abstract::Laser Capture Microdissection (LCM) is a powerful tool to isolate and study gene expression pattern of desired and less accessible cells or tissues from a heterogeneous population. Existing LCM-based methods fail to obtain high quality RNA including small RNAs from small microdissected plant tissue and therefore, are ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21577

    authors: Gautam V,Singh A,Singh S,Sarkar AK

    更新日期:2016-02-10 00:00:00

  • Oncologist-led BRCA 'mainstreaming' in the ovarian cancer clinic: A study of 255 patients and its impact on their management.

    abstract::Although guidelines recommend BRCA testing for all women with non-mucinous epithelial ovarian cancer, there is significant variability in access to testing across the UK. A germline BRCA mutation (BRCAm) in ovarian cancer patients provides prognostic and predictive information and influences clinical management, such ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-60149-5

    authors: Rumford M,Lythgoe M,McNeish I,Gabra H,Tookman L,Rahman N,George A,Krell J

    更新日期:2020-02-25 00:00:00

  • Acute LPS sensitization and continuous infusion exacerbates hypoxic brain injury in a piglet model of neonatal encephalopathy.

    abstract::Co-existing infection/inflammation and birth asphyxia potentiate the risk of developing neonatal encephalopathy (NE) and adverse outcome. In a newborn piglet model we assessed the effect of E. coli lipopolysaccharide (LPS) infusion started 4 h prior to and continued for 48 h after hypoxia on brain cell death and syste...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46488-y

    authors: Martinello KA,Meehan C,Avdic-Belltheus A,Lingam I,Ragab S,Hristova M,Tann CJ,Peebles D,Hagberg H,Wolfs TGAM,Klein N,Tachtsidis I,Golay X,Kramer BW,Fleiss B,Gressens P,Robertson NJ

    更新日期:2019-07-15 00:00:00

  • Proteomics reveals the preliminary physiological states of the spotted seal (Phoca largha) pups.

    abstract::Spotted seal (Phoca largha) is a critically endangered pinniped in China and South Korea. The conventional method to protect and maintain the P. largha population is to keep them captive in artificially controlled environments. However, little is known about the physiological differences between wild and captive P. la...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-75759-2

    authors: Tian J,Du J,Han J,Bao X,Song X,Lu Z

    更新日期:2020-10-30 00:00:00

  • 18F-FDG uptake in PET/CT is a potential predictive biomarker of response to anti-PD-1 antibody therapy in non-small cell lung cancer.

    abstract::To examine the association between 18F-fluorodeoxyglucose (18F-FDG) uptake in positron emission tomography/computed tomography (PET/CT) and the response to anti-programmed cell death-1 (PD-1) monoclonal antibody therapy in non-small cell lung cancer (NSCLC) patients, 89 patients with advanced or recurrent NSCLC were r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-50079-2

    authors: Takada K,Toyokawa G,Yoneshima Y,Tanaka K,Okamoto I,Shimokawa M,Wakasu S,Haro A,Osoegawa A,Tagawa T,Oda Y,Nakanishi Y,Mori M

    更新日期:2019-09-16 00:00:00

  • A 300 THz tabletop radar range system with sub-micron distance accuracy.

    abstract::We are presenting a compact radar range system with a scale factor of 105. Replacing the radio frequency (RF) by optical wavelength (300 THz), the system easily fit on a tabletop. We used interferometric time-of-flight to reproduce radar ranging measurements. Sub-micron range accuracy was achieved with a 100 fs laser ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-32846-9

    authors: Blanche PA,Neifeld M,Tuo M,Xin H,Peyghambarian N

    更新日期:2018-09-27 00:00:00

  • 3D-printing process design of lattice compressor impeller based on residual stress and deformation.

    abstract::The application of a lattice structure in the lightweight design of compressor impellers can reduce their mass and moment of inertia, hence improving the effective carrying of aircraft and reducing the start and braking moments of the impeller. The feasibility of a processing-lattice compressor impeller is the prerequ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57131-1

    authors: Jia D,Li F,Zhang Y

    更新日期:2020-01-17 00:00:00

  • Intracellular immunization against HIV infection with an intracellular antibody that mimics HIV integrase binding to the cellular LEDGF protein.

    abstract::Preventing the protein-protein interaction of the cellular chromatin binding protein Lens Epithelium-Derived Growth Factor (LEDGF) and human immunodeficiency virus (HIV) integrase is an important possible strategy for anti-viral treatment for AIDS. We have used Intracellular Antibody Capture technology to isolate a si...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-16742-2

    authors: Bao L,Hannon C,Cruz-Mignoni A,Ptchelkine D,Sun MY,Miller A,Bunjobpol W,Quevedo CE,Derveni M,Chambers J,Simmons A,Phillips SEV,Rabbitts TH

    更新日期:2017-12-04 00:00:00

  • Plk1 phosphorylation of CAP-H2 triggers chromosome condensation by condensin II at the early phase of mitosis.

    abstract::Condensin complexes play crucial roles in chromosome condensation that is a fundamental process to establish the "rod-like" shape of chromosome structure in mitosis. Failure of the chromosome assembly causes chromosome segregation errors and subsequent genomic instability. However, a molecular mechanism that controls ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-05986-7

    authors: Kagami Y,Ono M,Yoshida K

    更新日期:2017-07-17 00:00:00

  • Transcriptomics reveals multiple resistance mechanisms against cotton leaf curl disease in a naturally immune cotton species, Gossypium arboreum.

    abstract::Cotton leaf curl disease (CLCuD), caused by cotton leaf curl viruses (CLCuVs), is among the most devastating diseases in cotton. While the widely cultivated cotton species Gossypium hirsutum is generally susceptible, the diploid species G. arboreum is a natural source for resistance against CLCuD. However, the influen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-15963-9

    authors: Naqvi RZ,Zaidi SS,Akhtar KP,Strickler S,Woldemariam M,Mishra B,Mukhtar MS,Scheffler BE,Scheffler JA,Jander G,Mueller LA,Asif M,Mansoor S

    更新日期:2017-11-21 00:00:00

  • Enzyme-guided DNA Sewing Architecture.

    abstract::With the advent of nanotechnology, a variety of nanoarchitectures with varied physicochemical properties have been designed. Owing to the unique characteristics, DNAs have been used as a functional building block for novel nanoarchitecture. In particular, a self-assembly of long DNA molecules via a piece DNA staple ha...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep17722

    authors: Song IH,Shin SW,Park KS,Lansac Y,Jang YH,Um SH

    更新日期:2015-12-04 00:00:00

  • Treatment response and predictors in patients with newly diagnosed epilepsy in Ethiopia: a retrospective cohort study.

    abstract::Epilepsy is a chronic neurological disease with a variable therapeutic response. To design effective treatment strategies for epilepsy, it is important to understand treatment responses and predictive factors. However, limited data are available in Africa, including Ethiopia. The aim of this study was therefore to ass...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-52574-y

    authors: Gidey K,Chelkeba L,Gemechu TD,Daba FB

    更新日期:2019-11-07 00:00:00

  • Hydrogen-accelerated spontaneous microcracking in high-strength aluminium alloys.

    abstract::Aluminium alloys are re-evaluated as most feasible way to satisfy the industrial needs of light-weight structural materials. However, unlike conventional structural metals such as iron and titanium, aluminium does not have easily accessible secondary phases, which means that aluminium-based alloys cannot be strengthen...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-58834-6

    authors: Tsuru T,Shimizu K,Yamaguchi M,Itakura M,Ebihara K,Bendo A,Matsuda K,Toda H

    更新日期:2020-04-06 00:00:00

  • Few-cycle Regime Atomic Force Microscopy.

    abstract::Traditionally, dynamic atomic force microscopy (AFM) techniques are based on the analysis of the quasi-steady state response of the cantilever deflection in terms of Fourier analysis. Here we describe a technique that instead exploits the often disregarded transient response of the cantilever through a relatively mode...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-49104-1

    authors: López-Guerra EA,Somnath S,Solares SD,Jesse S,Ferrini G

    更新日期:2019-09-03 00:00:00

  • Soil microbial community composition does not predominantly determine the variance of heterotrophic soil respiration across four subtropical forests.

    abstract::To explore the importance of soil microbial community composition on explaining the difference in heterotrophic soil respiration (R(h)) across forests, a field investigation was conducted on Rh and soil physiochemical and microbial properties in four subtropical forests in southern China. We observed that Rh differed ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep07854

    authors: Wei H,Xiao G,Guenet B,Janssens IA,Shen W

    更新日期:2015-01-19 00:00:00

  • Giant and reversible room-temperature elastocaloric effect in a single-crystalline Ni-Fe-Ga magnetic shape memory alloy.

    abstract::Good mechanical properties and large adiabatic temperature change render Heusler-type Ni2FeGa-based magnetic shape memory alloys as a promising candidate material for solid-state mechanical cooling application at ambient conditions. Superelastic behavior and associated elastocaloric effect strongly reply on deformatio...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25500

    authors: Li Y,Zhao D,Liu J

    更新日期:2016-05-03 00:00:00

  • Determination of basal phosphodiesterase activity in mouse rod photoreceptors with cGMP clamp.

    abstract::Light regulates cGMP concentration in the photoreceptor cytoplasm by activating phosphodiesterase (PDE) molecules through a G-protein signalling cascade. Spontaneous PDE activity is present in rod outer segments even in darkness. This basal PDE activity (βdark) has not been determined in wild type mammalian photorecep...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-37661-w

    authors: Turunen TT,Koskelainen A

    更新日期:2019-02-04 00:00:00

  • Transcriptomic analysis of 3D Cardiac Differentiation of Human Induced Pluripotent Stem Cells Reveals Faster Cardiomyocyte Maturation Compared to 2D Culture.

    abstract::Human induced pluripotent stem cells (hiPSCs) represent an almost limitless source of cells for disease modelling and drug screening applications. Here we established an efficient and robust 3D platform for cardiomyocyte (CMs) production from hiPSCs, solely through small-molecule-based temporal modulation of the Wnt s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-45047-9

    authors: Branco MA,Cotovio JP,Rodrigues CAV,Vaz SH,Fernandes TG,Moreira LM,Cabral JMS,Diogo MM

    更新日期:2019-06-25 00:00:00

  • High-energy side-peak emission of exciton-polariton condensates in high density regime.

    abstract::In a standard semiconductor laser, electrons and holes recombine via stimulated emission to emit coherent light, in a process that is far from thermal equilibrium. Exciton-polariton condensates-sharing the same basic device structure as a semiconductor laser, consisting of quantum wells coupled to a microcavity-have b...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep25655

    authors: Horikiri T,Yamaguchi M,Kamide K,Matsuo Y,Byrnes T,Ishida N,Löffler A,Höfling S,Shikano Y,Ogawa T,Forchel A,Yamamoto Y

    更新日期:2016-05-19 00:00:00

  • A Feature based Reconstruction Model for Fluorescence Microscopy Image Denoising.

    abstract::The advent of Fluorescence Microscopy over the last few years have dramatically improved the problem of visualization and tracking of specific cellular objects for biological inference. But like any other imaging system, fluorescence microscopy has its own limitations. The resultant images suffer from the effect of no...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-43973-2

    authors: Maji SK,Yahia H

    更新日期:2019-05-22 00:00:00

  • Broadband diffusion metasurface based on a single anisotropic element and optimized by the Simulated Annealing algorithm.

    abstract::We propose a new strategy to design broadband and wide angle diffusion metasurfaces. An anisotropic structure which has opposite phases under x- and y-polarized incidence is employed as the "0" and "1" elements base on the concept of coding metamaterial. To obtain a uniform backward scattering under normal incidence, ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep23896

    authors: Zhao Y,Cao X,Gao J,Sun Y,Yang H,Liu X,Zhou Y,Han T,Chen W

    更新日期:2016-04-01 00:00:00

  • microRNA-352 regulates collateral vessel growth induced by elevated fluid shear stress in the rat hind limb.

    abstract::Although collateral vessel growth is distinctly enhanced by elevated fluid shear stress (FSS), the underlying regulatory mechanism of this process remains incompletely understood. Recent studies have shown that microRNAs (miRNAs) play a pivotal role in vascular development, homeostasis and a variety of diseases. There...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-06910-9

    authors: Guan Y,Cai B,Wu X,Peng S,Gan L,Huang D,Liu G,Dong L,Xiao L,Liu J,Zhang B,Cai WJ,Schaper J,Schaper W

    更新日期:2017-07-27 00:00:00

  • The temporary and accumulated effects of transcranial direct current stimulation for the treatment of advanced Parkinson's disease monkeys.

    abstract::Transcranial direct current stimulation (tDCS) is a useful noninvasive technique of cortical brain stimulation for the treatment of neurological disorders. Clinical research has demonstrated tDCS with anodal stimulation of primary motor cortex (M1) in Parkinson's disease (PD) patients significantly improved their moto...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12178

    authors: Li H,Lei X,Yan T,Li H,Huang B,Li L,Xu L,Liu L,Chen N,Lü L,Ma Y,Xu L,Li J,Wang Z,Zhang B,Hu X

    更新日期:2015-07-29 00:00:00

  • Control of Propionibacterium acnes by natural antimicrobial substances: Role of the bacteriocin AS-48 and lysozyme.

    abstract::We report the high susceptibility of several clinical isolates of Propionibacterium acnes from different sources (skin, bone, wound exudates, abscess or blood contamination) to the head-to-tail cyclized bacteriocin AS-48. This peptide is a feasible candidate for further pharmacological development against this bacteri...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-29580-7

    authors: Cebrián R,Arévalo S,Rubiño S,Arias-Santiago S,Rojo MD,Montalbán-López M,Martínez-Bueno M,Valdivia E,Maqueda M

    更新日期:2018-08-06 00:00:00