Epstein-Barr virus ncRNA from a nasopharyngeal carcinoma induces an inflammatory response that promotes virus production.

Abstract:

:The Epstein-Barr virus M81 strain, isolated from a nasopharyngeal carcinoma, induces potent spontaneous virus production in infected B cells. We found that the M81 non-coding Epstein-Barr-encoded RNA EBER2, which carries polymorphisms that are mainly restricted to viruses found in endemic nasopharyngeal carcinomas, markedly stimulated this process. M81 EBER2 increased CXCL8 expression, and this chemokine enhanced spontaneous lytic replication levels in M81-infected B cells. Both events resulted from the endocytosis of extracellular vesicles containing EBER2 that were generated by neighbouring M81-infected B cells, thereby generating a paracrine loop. These effects were strictly dependent on a functional Toll-like receptor 7 (TLR7), a sensor of single-stranded RNA located in the endosome of these cells. These unique properties of M81 EBER2 could be ascribed to its unusually high expression level and to the ability of its single-stranded region to activate TLR7; both of these properties were dependent on M81-specific polymorphisms. Thus, M81 induced chronic inflammation in its target cells and this resulted in increased virus production. These observations provide a mechanistic molecular link between M81 virus replication-a central viral function and a cancer risk factor-and the production of a chemokine involved in inflammation and carcinogenesis.

journal_name

Nat Microbiol

journal_title

Nature microbiology

authors

Li Z,Tsai MH,Shumilov A,Baccianti F,Tsao SW,Poirey R,Delecluse HJ

doi

10.1038/s41564-019-0546-y

subject

Has Abstract

pub_date

2019-12-01 00:00:00

pages

2475-2486

issue

12

issn

2058-5276

pii

10.1038/s41564-019-0546-y

journal_volume

4

pub_type

杂志文章
  • Genome reduction in an abundant and ubiquitous soil bacterium 'Candidatus Udaeobacter copiosus'.

    abstract::Although bacteria within the Verrucomicrobia phylum are pervasive in soils around the world, they are under-represented in both isolate collections and genomic databases. Here, we describe a single verrucomicrobial group within the class Spartobacteria that is not closely related to any previously described taxa. We e...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2016.198

    authors: Brewer TE,Handley KM,Carini P,Gilbert JA,Fierer N

    更新日期:2016-10-31 00:00:00

  • Transcriptional regulation by σ factor phosphorylation in bacteria.

    abstract::A major form of transcriptional regulation in bacteria occurs through the exchange of the primary σ factor of RNA polymerase (RNAP) with an alternative extracytoplasmic function (ECF) σ factor1. ECF σ factors are generally intrinsically active and are retained in an inactive state via the sequestration into σ factor-a...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0648-6

    authors: Iyer SC,Casas-Pastor D,Kraus D,Mann P,Schirner K,Glatter T,Fritz G,Ringgaard S

    更新日期:2020-03-01 00:00:00

  • Structure of the essential Haemophilus influenzae UDP-diacylglucosamine pyrophosphohydrolase LpxH in lipid A biosynthesis.

    abstract::In most Gram-negative pathogens, the hydrolysis of UDP-2,3-diacylglucosamine to generate lipid X in lipid A biosynthesis is catalysed by the membrane-associated enzyme LpxH. We report the crystal structure of LpxH in complex with its product, lipid X, unveiling a unique insertion lid above the conserved architecture o...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2016.154

    authors: Cho J,Lee CJ,Zhao J,Young HE,Zhou P

    更新日期:2016-08-15 00:00:00

  • Tagging the type VI secretion system.

    abstract:: ...

    journal_title:Nature microbiology

    pub_type: 评论,杂志文章

    doi:10.1038/s41564-018-0277-5

    authors: Francetic O

    更新日期:2018-11-01 00:00:00

  • Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes.

    abstract::Surface ocean waters are dominated by planktonic bacterial lineages with highly reduced genomes. The best examples are the cyanobacterial genus Prochlorococcus, the alphaproteobacterial clade SAR11 and the gammaproteobacterial clade SAR86, which together represent over 50% of the cells in surface oceans. Several studi...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2017.91

    authors: Luo H,Huang Y,Stepanauskas R,Tang J

    更新日期:2017-06-12 00:00:00

  • Pneumococcal quorum sensing drives an asymmetric owner-intruder competitive strategy during carriage via the competence regulon.

    abstract::Competition among microorganisms is a key determinant of successful host colonization and persistence. For Streptococcus pneumoniae, lower than predicted rates of co-colonizing strains suggest a competitive advantage for resident bacteria over newcomers. In light of evolutionary theory, we hypothesized that S. pneumon...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-018-0314-4

    authors: Shen P,Lees JA,Bee GCW,Brown SP,Weiser JN

    更新日期:2019-01-01 00:00:00

  • Author Correction: Reactive oxygen species induce antibiotic tolerance during systemic Staphylococcus aureus infection.

    abstract::An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title:Nature microbiology

    pub_type: 已发布勘误

    doi:10.1038/s41564-020-0679-z

    authors: Rowe SE,Wagner NJ,Li L,Beam JE,Wilkinson AD,Radlinski LC,Zhang Q,Miao EA,Conlon BP

    更新日期:2020-03-01 00:00:00

  • Carcinogenesis and therapeutics: the microbiota perspective.

    abstract::Cancer arises from the acquisition of multiple genetic and epigenetic changes in host cells over the span of many years, promoting oncogenic traits and carcinogenesis. Most cancers develop following random somatic alterations of key oncogenic genes, which are favoured by a number of risk factors, including lifestyle, ...

    journal_title:Nature microbiology

    pub_type: 杂志文章,评审

    doi:10.1038/nmicrobiol.2017.8

    authors: Tsilimigras MC,Fodor A,Jobin C

    更新日期:2017-02-22 00:00:00

  • Structural dynamics of bacteriophage P22 infection initiation revealed by cryo-electron tomography.

    abstract::For successful infection, bacteriophages must overcome multiple barriers to transport their genome and proteins across the bacterial cell envelope. We use cryo-electron tomography to study the infection initiation of phage P22 in Salmonella enterica serovar Typhimurium, revealing how a channel forms to allow genome tr...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0403-z

    authors: Wang C,Tu J,Liu J,Molineux IJ

    更新日期:2019-06-01 00:00:00

  • Coordinated regulation of growth, activity and transcription in natural populations of the unicellular nitrogen-fixing cyanobacterium Crocosphaera.

    abstract::The temporal dynamics of phytoplankton growth and activity have large impacts on fluxes of matter and energy, yet obtaining in situ metabolic measurements of sufficient resolution for even dominant microorganisms remains a considerable challenge. We performed Lagrangian diel sampling with synoptic measurements of popu...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2017.118

    authors: Wilson ST,Aylward FO,Ribalet F,Barone B,Casey JR,Connell PE,Eppley JM,Ferrón S,Fitzsimmons JN,Hayes CT,Romano AE,Turk-Kubo KA,Vislova A,Armbrust EV,Caron DA,Church MJ,Zehr JP,Karl DM,DeLong EF

    更新日期:2017-07-31 00:00:00

  • Mini viral RNAs act as innate immune agonists during influenza virus infection.

    abstract::The molecular processes that determine the outcome of influenza virus infection in humans are multifactorial and involve a complex interplay between host, viral and bacterial factors1. However, it is generally accepted that a strong innate immune dysregulation known as 'cytokine storm' contributes to the pathology of ...

    journal_title:Nature microbiology

    pub_type: 信件

    doi:10.1038/s41564-018-0240-5

    authors: Te Velthuis AJW,Long JC,Bauer DLV,Fan RLY,Yen HL,Sharps J,Siegers JY,Killip MJ,French H,Oliva-Martín MJ,Randall RE,de Wit E,van Riel D,Poon LLM,Fodor E

    更新日期:2018-11-01 00:00:00

  • The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks.

    abstract::Virus taxonomy emerged as a discipline in the middle of the twentieth century. Traditionally, classification by virus taxonomists has been focussed on the grouping of relatively closely related viruses. However, during the past few years, the International Committee on Taxonomy of Viruses (ICTV) has recognized that th...

    journal_title:Nature microbiology

    pub_type: 杂志文章,评审

    doi:10.1038/s41564-020-0709-x

    authors: International Committee on Taxonomy of Viruses Executive Committee.

    更新日期:2020-05-01 00:00:00

  • Systems-based analysis of RIG-I-dependent signalling identifies KHSRP as an inhibitor of RIG-I receptor activation.

    abstract::Retinoic acid-inducible gene I (RIG-I) receptor recognizes 5'-triphosphorylated RNA and triggers a signalling cascade that results in the induction of type-I interferon (IFN)-dependent responses. Its precise regulation represents a pivotal balance between antiviral defences and autoimmunity. To elucidate the cellular ...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2017.22

    authors: Soonthornvacharin S,Rodriguez-Frandsen A,Zhou Y,Galvez F,Huffmaster NJ,Tripathi S,Balasubramaniam VR,Inoue A,de Castro E,Moulton H,Stein DA,Sánchez-Aparicio MT,De Jesus PD,Nguyen Q,König R,Krogan NJ,García-Sastre A,Yoh

    更新日期:2017-03-01 00:00:00

  • Chance and pleiotropy dominate genetic diversity in complex bacterial environments.

    abstract::How does environmental complexity affect the evolution of single genes? Here, we measured the effects of a set of Bacillus subtilis glutamate dehydrogenase mutants across 19 different environments-from phenotypically homogeneous single-cell populations in liquid media to heterogeneous biofilms, plant roots and soil po...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0412-y

    authors: Noda-García L,Davidi D,Korenblum E,Elazar A,Putintseva E,Aharoni A,Tawfik DS

    更新日期:2019-07-01 00:00:00

  • Author Correction: Evolution of host adaptation in the Salmonella typhoid toxin.

    abstract::The original version of this Letter has been modified in the abstract and main text to better reflect the distribution of Neu5Ac sialoglycans in humans. Additionally, co-author Lingquan Deng's present address has been further clarified. ...

    journal_title:Nature microbiology

    pub_type: 已发布勘误

    doi:10.1038/s41564-017-0070-x

    authors: Gao X,Deng L,Stack G,Yu H,Chen X,Naito-Matsui Y,Varki A,Galán JE

    更新日期:2017-12-01 00:00:00

  • Crystal structure of Clostridium difficile toxin A.

    abstract::Clostridium difficile infection is the leading cause of hospital-acquired diarrhoea and pseudomembranous colitis. Disease is mediated by the actions of two toxins, TcdA and TcdB, which cause the diarrhoea, as well as inflammation and necrosis within the colon. The toxins are large (308 and 270 kDa, respectively), homo...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2015.2

    authors: Chumbler NM,Rutherford SA,Zhang Z,Farrow MA,Lisher JP,Farquhar E,Giedroc DP,Spiller BW,Melnyk RA,Lacy DB

    更新日期:2016-01-11 00:00:00

  • Unexpected mode of engagement between enterovirus 71 and its receptor SCARB2.

    abstract::Enterovirus 71 (EV71) is a common cause of hand, foot and mouth disease-a disease endemic especially in the Asia-Pacific region1. Scavenger receptor class B member 2 (SCARB2) is the major receptor of EV71, as well as several other enteroviruses responsible for hand, foot and mouth disease, and plays a key role in cell...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-018-0319-z

    authors: Zhou D,Zhao Y,Kotecha A,Fry EE,Kelly JT,Wang X,Rao Z,Rowlands DJ,Ren J,Stuart DI

    更新日期:2019-03-01 00:00:00

  • AXL promotes Zika virus infection in astrocytes by antagonizing type I interferon signalling.

    abstract::Zika virus (ZIKV) is associated with neonatal microcephaly and Guillain-Barré syndrome1,2. While progress has been made in understanding the causal link between ZIKV infection and microcephaly3-9, the life cycle and pathogenesis of ZIKV are less well understood. In particular, there are conflicting reports on the role...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-017-0092-4

    authors: Chen J,Yang YF,Yang Y,Zou P,Chen J,He Y,Shui SL,Cui YR,Bai R,Liang YJ,Hu Y,Jiang B,Lu L,Zhang X,Liu J,Xu J

    更新日期:2018-03-01 00:00:00

  • Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity.

    abstract::CRISPR-Cas systems are adaptive immune systems that protect bacteria from bacteriophage (phage) infection1. To provide immunity, RNA-guided protein surveillance complexes recognize foreign nucleic acids, triggering their destruction by Cas nucleases2. While the essential requirements for immune activity are well under...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-020-0691-3

    authors: Borges AL,Castro B,Govindarajan S,Solvik T,Escalante V,Bondy-Denomy J

    更新日期:2020-05-01 00:00:00

  • A competitive trade-off limits the selective advantage of increased antibiotic production.

    abstract::In structured environments, antibiotic-producing microorganisms can gain a selective advantage by inhibiting nearby competing species1. However, despite their genetic potential2,3, natural isolates often make only small amounts of antibiotics, and laboratory evolution can lead to loss rather than enhancement of antibi...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2016.175

    authors: Gerardin Y,Springer M,Kishony R

    更新日期:2016-09-26 00:00:00

  • Influenza virus mRNA trafficking through host nuclear speckles.

    abstract::Influenza A virus is a human pathogen with a genome composed of eight viral RNA segments that replicate in the nucleus. Two viral mRNAs are alternatively spliced. The unspliced M1 mRNA is translated into the matrix M1 protein, while the ion channel M2 protein is generated after alternative splicing. These proteins are...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2016.69

    authors: Mor A,White A,Zhang K,Thompson M,Esparza M,Muñoz-Moreno R,Koide K,Lynch KW,García-Sastre A,Fontoura BM

    更新日期:2016-05-27 00:00:00

  • A humanized MDCK cell line for the efficient isolation and propagation of human influenza viruses.

    abstract::Here, we developed hCK, a Madin-Darby canine kidney (MDCK) cell line that expresses high levels of human influenza virus receptors and low levels of avian virus receptors. hCK cells supported human A/H3N2 influenza virus isolation and growth much more effectively than conventional MDCK or human virus receptor-overexpr...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0433-6

    authors: Takada K,Kawakami C,Fan S,Chiba S,Zhong G,Gu C,Shimizu K,Takasaki S,Sakai-Tagawa Y,Lopes TJS,Dutta J,Khan Z,Kriti D,van Bakel H,Yamada S,Watanabe T,Imai M,Kawaoka Y

    更新日期:2019-08-01 00:00:00

  • A natural toroidal microswimmer with a rotary eukaryotic flagellum.

    abstract::We describe Idionectes vortex gen. nov., sp. nov., a unicellular microeukaryote that swims by continuous inversion of its surface, similar to a vortex ring. This previously unreported mode of motility approximates a hypothetical concept called the 'toroidal swimmer', in which a doughnut-shaped object rotates around it...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0478-6

    authors: Hess S,Eme L,Roger AJ,Simpson AGB

    更新日期:2019-10-01 00:00:00

  • Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.

    abstract::Primary sclerosing cholangitis (PSC) is a chronic inflammatory liver disease and its frequent complication with ulcerative colitis highlights the pathogenic role of epithelial barrier dysfunction. Intestinal barrier dysfunction has been implicated in the pathogenesis of PSC, yet its underlying mechanism remains unknow...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-018-0333-1

    authors: Nakamoto N,Sasaki N,Aoki R,Miyamoto K,Suda W,Teratani T,Suzuki T,Koda Y,Chu PS,Taniki N,Yamaguchi A,Kanamori M,Kamada N,Hattori M,Ashida H,Sakamoto M,Atarashi K,Narushima S,Yoshimura A,Honda K,Sato T,Kanai T

    更新日期:2019-03-01 00:00:00

  • Erratum: Conserved patterns hidden within group A Streptococcus M protein hypervariability recognize human C4b-binding protein.

    abstract::This corrects the article DOI: 10.1038/nmicrobiol.2016.155. ...

    journal_title:Nature microbiology

    pub_type: 已发布勘误

    doi:10.1038/nmicrobiol.2017.107

    authors: Buffalo CZ,Bahn-Suh AJ,Hirakis SP,Biswas T,Amaro RE,Nizet V,Ghosh P

    更新日期:2017-06-12 00:00:00

  • VacA generates a protective intracellular reservoir for Helicobacter pylori that is eliminated by activation of the lysosomal calcium channel TRPML1.

    abstract::Helicobacter pylori infection is a proven carcinogen for gastric cancer. Its virulence factor vacuolating cytotoxin A (VacA) promotes more severe disease and gastric colonization. VacA, by an unknown mechanism, usurps lysosomal and autophagy pathways to generate a protected reservoir for H. pylori that confers bacteri...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0441-6

    authors: Capurro MI,Greenfield LK,Prashar A,Xia S,Abdullah M,Wong H,Zhong XZ,Bertaux-Skeirik N,Chakrabarti J,Siddiqui I,O'Brien C,Dong X,Robinson L,Peek RM Jr,Philpott DJ,Zavros Y,Helmrath M,Jones NL

    更新日期:2019-08-01 00:00:00

  • Species-function relationships shape ecological properties of the human gut microbiome.

    abstract::Despite recent progress, the organization and ecological properties of the intestinal microbial ecosystem remain under-investigated. Here, using a manually curated metabolic module framework for (meta-)genomic data analysis, we studied species-function relationships in gut microbial genomes and microbiomes. Half of gu...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2016.88

    authors: Vieira-Silva S,Falony G,Darzi Y,Lima-Mendez G,Garcia Yunta R,Okuda S,Vandeputte D,Valles-Colomer M,Hildebrand F,Chaffron S,Raes J

    更新日期:2016-06-13 00:00:00

  • Phenotypic heterogeneity driven by nutrient limitation promotes growth in fluctuating environments.

    abstract::Most microorganisms live in environments where nutrients are limited and fluctuate over time. Cells respond to nutrient fluctuations by sensing and adapting their physiological state. Recent studies suggest phenotypic heterogeneity(1) in isogenic populations as an alternative strategy in fluctuating environments, wher...

    journal_title:Nature microbiology

    pub_type: 信件

    doi:10.1038/nmicrobiol.2016.55

    authors: Schreiber F,Littmann S,Lavik G,Escrig S,Meibom A,Kuypers MM,Ackermann M

    更新日期:2016-05-09 00:00:00

  • Growth control switch by a DNA-damage-inducible toxin-antitoxin system in Caulobacter crescentus.

    abstract::Bacterial toxin-antitoxin systems (TASs) are thought to respond to various stresses, often inducing growth-arrested (persistent) sub-populations of cells whose housekeeping functions are inhibited. Many such TASs induce this effect through the translation-dependent RNA cleavage (RNase) activity of their toxins, which ...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/nmicrobiol.2016.8

    authors: Kirkpatrick CL,Martins D,Redder P,Frandi A,Mignolet J,Chapalay JB,Chambon M,Turcatti G,Viollier PH

    更新日期:2016-02-22 00:00:00

  • Commensal Escherichia coli are a reservoir for the transfer of XDR plasmids into epidemic fluoroquinolone-resistant Shigella sonnei.

    abstract::Despite the sporadic detection of fluoroquinolone-resistant Shigella in Asia in the early 2000s and the subsequent global spread of ciprofloxacin-resistant (cipR) Shigella sonnei from 2010, fluoroquinolones remain the recommended therapy for shigellosis1-7. The potential for cipR S. sonnei to develop resistance to alt...

    journal_title:Nature microbiology

    pub_type: 杂志文章

    doi:10.1038/s41564-019-0645-9

    authors: Thanh Duy P,Thi Nguyen TN,Vu Thuy D,Chung The H,Alcock F,Boinett C,Dan Thanh HN,Thanh Tuyen H,Thwaites GE,Rabaa MA,Baker S

    更新日期:2020-02-01 00:00:00