ShadowR: a novel chromoprotein with reduced non-specific binding and improved expression in living cells.

Abstract:

:Here we developed an orange light-absorbing chromoprotein named ShadowR as a novel acceptor for performing fluorescence lifetime imaging microscopy-based Förster resonance energy transfer (FLIM-FRET) measurement in living cells. ShadowR was generated by replacing hydrophobic amino acids located at the surface of the chromoprotein Ultramarine with hydrophilic amino acids in order to reduce non-specific interactions with cytosolic proteins. Similar to Ultramarine, ShadowR shows high absorption capacity and no fluorescence. However, it exhibits reduced non-specific binding to cytosolic proteins and is highly expressed in HeLa cells. Using tandem constructs and a LOVTRAP system, we showed that ShadowR can be used as a FRET acceptor in combination with donor mRuby2 or mScarlet in HeLa cells. Thus, ShadowR is a useful, novel FLIM-FRET acceptor.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Murakoshi H,Horiuchi H,Kosugi T,Onda M,Sato A,Koga N,Nabekura J

doi

10.1038/s41598-019-48604-4

subject

Has Abstract

pub_date

2019-08-19 00:00:00

pages

12072

issue

1

issn

2045-2322

pii

10.1038/s41598-019-48604-4

journal_volume

9

pub_type

杂志文章
  • The diagnostic value of human epididymis protein 4 for endometrial cancer is moderate.

    abstract::Human epididymis protein 4 (HE4) has been used as a biomarker of endometrial cancer (EC) in clinical practice. However, there remains a lack of systemic research on the critical values of HE4 for diagnosing different clinical stages and pathological types of EC. This study investigated the accuracy of human epididymis...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-79960-1

    authors: Liu J,Han L,Jiao Z

    更新日期:2021-01-12 00:00:00

  • 3'-Sialyllactose prebiotics prevents skin inflammation via regulatory T cell differentiation in atopic dermatitis mouse models.

    abstract::3'-Sialyllactose (3'-SL), a natural prebiotic, maintains immune homeostasis and exerts anti-inflammatory and anti-arthritic effects. Although regulatory T cells (Tregs) prevent excessive inflammation and maintain immune tolerance, the effect of 3'-SL on Treg regulation is unclear. This study aimed to investigate the e...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62527-5

    authors: Kang LJ,Oh E,Cho C,Kwon H,Lee CG,Jeon J,Lee H,Choi S,Han SJ,Nam J,Song CU,Jung H,Kim HY,Park EJ,Choi EJ,Kim J,Eyun SI,Yang S

    更新日期:2020-03-27 00:00:00

  • Multi-Domain Negative Capacitance Effects in Metal-Ferroelectric-Insulator-Semiconductor/Metal Stacks: A Phase-field Simulation Based Study.

    abstract::We analyze the ferroelectric domain-wall induced negative capacitance (NC) effect in Metal-FE-Insulator-Metal (MFIM) and Metal-FE-Insulator-Semiconductor (MFIS) stacks through phase-field simulations by self-consistently solving time-dependent Ginzburg Landau equation, Poisson's equation and semiconductor charge equat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-66313-1

    authors: Saha AK,Gupta SK

    更新日期:2020-06-23 00:00:00

  • Involvement of AMP-activated protein kinase and Death Receptor 5 in TRAIL-Berberine-induced apoptosis of cancer cells.

    abstract::Our previous studies indicated that combination of Tumor necrosis factor-related apoptosis-inducing ligand (TRAIL) and PPARγ ligand Troglitazone (TZD), can induce significant apoptosis in various TRAIL-resistant prostate and hepatocellular carcinoma (HCC) cells. These also suggested serine/threonine kinase AMP-activat...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-23780-x

    authors: Ke R,Vishnoi K,Viswakarma N,Santha S,Das S,Rana A,Rana B

    更新日期:2018-04-03 00:00:00

  • Molecular Simulation Elaborating the Mechanism of 1β-Hydroxy Alantolactone Inhibiting Ubiquitin-Conjugating Enzyme UbcH5s.

    abstract::1β-hydroxy alantolactone, a sesquiterpene lactone, exhibits potent anti-inflammatory and anticancer activities. Recently, it has been found to target UbcH5s by covalently bonding with Cys85 specifically, but the exact molecular basis remains unclear. Here, we analyzed the structural specificity of the catalytic site o...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-57104-4

    authors: Xu Y,Meng X

    更新日期:2020-01-10 00:00:00

  • A Data Driven Model for Predicting RNA-Protein Interactions based on Gradient Boosting Machine.

    abstract::RNA protein interactions (RPI) play a pivotal role in the regulation of various biological processes. Experimental validation of RPI has been time-consuming, paving the way for computational prediction methods. The major limiting factor of these methods has been the accuracy and confidence of the predictions, and our ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-27814-2

    authors: Jain DS,Gupte SR,Aduri R

    更新日期:2018-06-22 00:00:00

  • Publisher Correction: PP2A inhibition from LB100 therapy enhances daunorubicin cytotoxicity in secondary acute myeloid leukemia via miR-181b-1 upregulation.

    abstract::A correction to this article has been published and is linked from the HTML version of this paper. The error has been fixed in the paper. ...

    journal_title:Scientific reports

    pub_type: 杂志文章,已发布勘误

    doi:10.1038/s41598-017-14858-z

    authors: Hu C,Yu M,Ren Y,Li K,Maggio DM,Mei C,Ye L,Wei J,Jin J,Zhuang Z,Tong H

    更新日期:2017-11-07 00:00:00

  • Relationship between frequency of hypoglycemic episodes and changes in carotid atherosclerosis in insulin-treated patients with type 2 diabetes mellitus.

    abstract::The effect of hypoglycemia on the progression of atherosclerosis in patients with type 2 diabetes mellitus (T2DM) remains largely unknown. This is a post hoc analysis of a randomized trial to investigate the relationship between hypoglycemic episodes and changes in carotid intima-media thickness (IMT). Among 274 study...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep39965

    authors: Mita T,Katakami N,Shiraiwa T,Yoshii H,Kuribayashi N,Osonoi T,Kaneto H,Kosugi K,Umayahara Y,Gosho M,Shimomura I,Watada H

    更新日期:2017-01-09 00:00:00

  • Electro-optic analyzer of angular momentum hyperentanglement.

    abstract::Characterizing a high-dimensional entanglement is fundamental in quantum information applications. Here, we propose a theoretical scheme to analyze and characterize the angular momentum hyperentanglement that two photons are entangled simultaneously in spin and orbital angular momentum. Based on the electro-optic samp...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep21856

    authors: Wu Z,Chen L

    更新日期:2016-02-25 00:00:00

  • Specialised emission pattern of leaf trace in a late Permian (253 million-years old) conifer.

    abstract::Leaf traces are important structures in higher plants that connect leaves and the stem vascular system. The anatomy and emission pattern of leaf traces are well studied in extant vascular plants, but remain poorly understood in fossil lineages. We quantitatively analysed the leaf traces in the late Permian conifer Nin...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep12405

    authors: Wei HB,Feng Z,Yang JY,Chen YX,Shen JJ,He XY

    更新日期:2015-07-22 00:00:00

  • Graft revascularization is essential for non-invasive monitoring of transplanted islets with radiolabeled exendin.

    abstract::Islet transplantation is a novel promising strategy to cure type 1 diabetes. However, the long-term outcome is still poor, because both function and survival of the transplant decline over-time. Non-invasive imaging methods have the potential to enable monitoring of islet survival after transplantation and the effects...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep15521

    authors: Eter WA,Bos D,Frielink C,Boerman OC,Brom M,Gotthardt M

    更新日期:2015-10-22 00:00:00

  • Magma fragmentation and particle size distributions in low intensity mafic explosions: the July/August 2015 Piton de la Fournaise eruption.

    abstract::Understanding magma fragmentation mechanisms in explosive eruptions is a key requirement for volcanic hazard assessment, eruption management and risk mitigation. This paper focuses on a type case small explosivity eruption (July-August 2015 eruption of Piton de la Fournaise). These eruptions, despite being often overl...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-69976-y

    authors: Edwards MJ,Pioli L,Harris AJL,Gurioli L,Thivet S

    更新日期:2020-08-18 00:00:00

  • The effect of Elymus nutans sowing density on soil reinforcement and slope stabilization properties of vegetation-concrete structures.

    abstract::Elymus nutans is an herbaceous plant that can be used to restore degraded alpine and subalpine ecosystems. Here, we evaluated how sowing density affects soil reinforcement and slope stabilization properties of vegetation-concrete structures. To investigate the optimal sowing density of E. nutans in vegetation-concrete...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-77407-1

    authors: Tan X,Huang Y,Xiong D,Lv K,Chen F

    更新日期:2020-11-24 00:00:00

  • QuanTI-FRET: a framework for quantitative FRET measurements in living cells.

    abstract::Förster Resonance Energy Transfer (FRET) allows for the visualization of nanometer-scale distances and distance changes. This sensitivity is regularly achieved in single-molecule experiments in vitro but is still challenging in biological materials. Despite many efforts, quantitative FRET in living samples is either r...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-62924-w

    authors: Coullomb A,Bidan CM,Qian C,Wehnekamp F,Oddou C,Albigès-Rizo C,Lamb DC,Dupont A

    更新日期:2020-04-16 00:00:00

  • The effect of chemical erosion on mechanical properties and fracture of sandstone under shear loading: an experimental study.

    abstract::In order to study the effect of water-rock interactions on shear strength characteristics, we performed shearing tests under varying hydrochemical environments. Moreover, a custom meso-shear test equipment for coal rock was used for the tests. Through 3D scanning of the shear fractures and scanning electron microscope...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56196-2

    authors: Chen C,Peng S,Wu S,Xu J

    更新日期:2019-12-27 00:00:00

  • Increased lead concentrations in the hairs of radiographers in general hospitals.

    abstract::This study investigated lead concentrations in the hairs of radiographers working in the radiological departments of general hospitals that used lead shielding for radiation protection. We collected scalp hair samples from 32 radiographers working in four radiology departments with lead shielding and 18 administration...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-80721-3

    authors: Hung MC,Chang P

    更新日期:2021-01-08 00:00:00

  • Vagotomy attenuates bleomycin-induced pulmonary fibrosis in mice.

    abstract::The progression of pulmonary fibrosis (PF) entails a complex network of interactions between multiple classes of molecules and cells, which are closely related to the vagus nerve. Stimulation of the vagus nerve increases fibrogenic cytokines in humans, therefore, activation of the nerve may promote PF. The hypothesis ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep13419

    authors: Song N,Liu J,Shaheen S,Du L,Proctor M,Roman J,Yu J

    更新日期:2015-08-20 00:00:00

  • Prevention of lipid loss from hair by surface and internal modification.

    abstract::Surfactants during routine washing have a tremendous effect on lipid loss from hair. This study aims to understand the loss of lipids from hair upon contact with surfactants and develop a way to prevent the lipid loss. The change in lipid levels depends on the relative hydrophobicity of the lipid. We herein propose th...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-46370-x

    authors: Song SH,Lim JH,Son SK,Choi J,Kang NG,Lee SM

    更新日期:2019-07-08 00:00:00

  • Oncogenic G12D mutation alters local conformations and dynamics of K-Ras.

    abstract::K-Ras is the most frequently mutated oncoprotein in human cancers, and G12D is its most prevalent mutation. To understand how G12D mutation impacts K-Ras function, we need to understand how it alters the regulation of its dynamics. Here, we present local changes in K-Ras structure, conformation and dynamics upon G12D ...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-48029-z

    authors: Vatansever S,Erman B,Gümüş ZH

    更新日期:2019-08-13 00:00:00

  • miR-19a contributes to gefitinib resistance and epithelial mesenchymal transition in non-small cell lung cancer cells by targeting c-Met.

    abstract::Gefitinib, an epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor, is used as a first-line treatment for advanced non-small cell lung cancer (NSCLC). However, most NSCLC patients inevitably develop gefitinib resistance, and the mechanisms underlying this resistance are not fully understood. In this study...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-01153-0

    authors: Cao X,Lai S,Hu F,Li G,Wang G,Luo X,Fu X,Hu J

    更新日期:2017-06-07 00:00:00

  • Genomics of experimental adaptation of Staphylococcus aureus to a natural combination of insect antimicrobial peptides.

    abstract::Antimicrobial peptides (AMP) are highly conserved immune effectors across the tree of life and are employed as combinations. In the beetle Tenebrio molitor, a defensin and a coleoptericin are highly expressed in vivo after inoculation with S. aureus. The defensin displays strong in vitro activity but no survival benef...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-018-33593-7

    authors: Makarova O,Johnston P,Rodriguez-Rojas A,El Shazely B,Morales JM,Rolff J

    更新日期:2018-10-18 00:00:00

  • Characterization of Holstein and Normande whole milk miRNomes highlights breed specificities.

    abstract::The concept of milk as a healthy food has opened the way for studies on milk components, from nutrients to microRNAs, molecules with broad regulatory properties present in large quantities in milk. Characterization of these components has been performed in several species, such as humans and bovine, depending on the s...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-56690-7

    authors: Le Guillou S,Leduc A,Laubier J,Barbey S,Rossignol MN,Lefebvre R,Marthey S,Laloë D,Le Provost F

    更新日期:2019-12-30 00:00:00

  • Sedentary lifestyle related exosomal release of Hotair from gluteal-femoral fat promotes intestinal cell proliferation.

    abstract::Pioneering epidemiological work has established strong association of sedentary lifestyle and obesity with the risk of colorectal cancer, while the detailed underlying mechanism remains unknown. Here we show that Hotair (HOX transcript antisense RNA) is a pro-adipogenic long non-coding RNA highly expressed in gluteal-...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep45648

    authors: Lu X,Bai D,Liu X,Zhou C,Yang G

    更新日期:2017-03-31 00:00:00

  • Hyperactivation of mTORC1 disrupts cellular homeostasis in cerebellar Purkinje cells.

    abstract::Mammalian target of rapamycin (mTOR) is a central regulator of cellular metabolism. The importance of mTORC1 signaling in neuronal development and functions has been highlighted by its strong relationship with many neurological and neuropsychiatric diseases. Previous studies demonstrated that hyperactivation of mTORC1...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-38730-4

    authors: Sakai Y,Kassai H,Nakayama H,Fukaya M,Maeda T,Nakao K,Hashimoto K,Sakagami H,Kano M,Aiba A

    更新日期:2019-02-26 00:00:00

  • Sentinel lymph node biopsy in cN0 neck management of parotid cancer.

    abstract::Our goals was to evaluate how sentinel lymph node biopsy (SLNB) benefit neck management in patients with parotid cancer. Patients diagnosed with cN0 parotid cancer by preoperative fine needle puncture were prospectively enrolled. The neck status was evaluated by SLNB. If node metastasis was proved by SLNB, a neck diss...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-44790-3

    authors: Pan W,Ba K,Niu X,Liu F,Fang Q

    更新日期:2019-06-06 00:00:00

  • Comparison of orofacial pain of patients with different stages of precancer and oral cancer.

    abstract::Orofacial pain impairs a patient's speech, swallowing, eating and interpersonal relations. Thirty-seven patients with a premalignant oral lesion, 124 patients with oral squamous cell carcinoma (OSSC), and 21 patients with a recurrence of OSSC were evaluated for their orofacial pain. The University of California San Fr...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-00370-x

    authors: Yang Y,Zhang P,Li W

    更新日期:2017-03-16 00:00:00

  • The role of hyaluronic acid and hyaluronidase-1 in obstructive sleep apnoea.

    abstract::Biological functions of hyaluronic acid (HA) depend on its molecular size. High-molecular weight HA (HMW-HA) is an important component of the endothelial wall and has anti-inflammatory and antioxidant properties. Under inflammation or hypoxia, HMW-HA is degraded by hyaluronidases, such as HYAL-1 resulting in pro-infla...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-020-74769-4

    authors: Meszaros M,Kis A,Kunos L,Tarnoki AD,Tarnoki DL,Lazar Z,Bikov A

    更新日期:2020-11-10 00:00:00

  • Reliability in adolescent fMRI within two years - a comparison of three tasks.

    abstract::Longitudinal developmental fMRI studies just recently began to focus on within-subject reliability using the intraclass coefficient (ICC). It remains largely unclear which degree of reliability can be achieved in developmental studies and whether this depends on the type of task used. Therefore, we aimed to systematic...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-017-02334-7

    authors: Vetter NC,Steding J,Jurk S,Ripke S,Mennigen E,Smolka MN

    更新日期:2017-05-23 00:00:00

  • Magnetic resonance imaging with optical preamplification and detection.

    abstract::Magnetic resonance (MR) imaging relies on conventional electronics that is increasingly challenged by the push for stronger magnetic fields and higher channel count. These problems can be avoided by utilizing optical technologies. As a replacement for the standard low-noise preamplifier, we have implemented a new tran...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/s41598-019-54200-3

    authors: Simonsen A,Sánchez-Heredia JD,Saarinen SA,Ardenkjær-Larsen JH,Schliesser A,Polzik ES

    更新日期:2019-12-03 00:00:00

  • Bleaching drives collapse in reef carbonate budgets and reef growth potential on southern Maldives reefs.

    abstract::Sea-surface temperature (SST) warming events, which are projected to increase in frequency and intensity with climate change, represent major threats to coral reefs. How these events impact reef carbonate budgets, and thus the capacity of reefs to sustain vertical growth under rising sea levels, remains poorly quantif...

    journal_title:Scientific reports

    pub_type: 杂志文章

    doi:10.1038/srep40581

    authors: Perry CT,Morgan KM

    更新日期:2017-01-13 00:00:00